Геном прокариот/Материалы:NC 008268

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008268            7804765 bp    DNA     linear   BCT 27-JUN-2007
   DEFINITION  Rhodococcus sp. RHA1, complete genome.
   ACCESSION   NC_008268
   VERSION     NC_008268.1  GI:111017022
   KEYWORDS    .
   SOURCE      Rhodococcus sp. RHA1
     ORGANISM  Rhodococcus sp. RHA1
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Nocardiaceae; Rhodococcus.
   REFERENCE   1  (bases 1 to 7804765)
     AUTHORS   McLeod,M.P., Warren,R.L., Hsiao,W.W., Araki,N., Myhre,M.,
               Fernandes,C., Miyazawa,D., Wong,W., Lillquist,A.L., Wang,D.,
               Dosanjh,M., Hara,H., Petrescu,A., Morin,R.D., Yang,G., Stott,J.M.,
               Schein,J.E., Shin,H., Smailus,D., Siddiqui,A.S., Marra,M.A.,
               Jones,S.J., Holt,R., Brinkman,F.S., Miyauchi,K., Fukuda,M.,
               Davies,J.E., Mohn,W.W. and Eltis,L.D.
     TITLE     The complete genome of Rhodococcus sp. RHA1 provides insights into
               a catabolic powerhouse
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15582-15587 (2006)
      PUBMED   17030794
   REFERENCE   2  (bases 1 to 7804765)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-JUL-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 7804765)
     AUTHORS   McLeod,M.P., Warren,R.L., Araki,N., Hsiao,W.W.L., Myhre,M.,
               Fernandes,C., Miyazawa,D., Wong,W., Lillquist,A.L., Wang,D.,
               Dosanjh,M., Petrescu,A., Morin,R.D., Yang,G., Stott,J.M.,
               Schein,J.E., Shin,H., Smailus,D., Siddiqui,A.S., Marra,M.A.,
               Jones,S.J.M., Holt,R., Brinkman,F.S.L., Miyauchi,K., Fukuda,M.,
               Davies,J.E., Mohn,W.W. and Eltis,L.D.
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2006) Microbiology and Immunology, University of
               British Columbia, 1365-2350 Health Sciences Mall, Vancouver, BC V6T
               1Z3, Canada
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000431.
               Bacteria available by contacting Lindsay Eltis (leltis [at]
               interchange.ubc.ca).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
949939	950024	+	86	111017022	RHA1_ro00893	-	^{15 Leu tRNA}
980124	980200	-	77	111017022	RHA1_ro00922	-	^{03 Pro tRNA}
997764	997883	-	120	111017022	RHA1_ro00939	-	5S ribosomal RNA
998011	1001147	-	3137	111017022	RHA1_ro00940	-	23S ribosomal RNA
1001498	1003016	-	1519	111017022	RHA1_ro00941	-	16S ribosomal RNA
1063477	1063550	+	74	111017022	RHA1_ro00999	-	^{15 Leu tRNA}
1264846	1264920	-	75	111017022	RHA1_ro01193	-	^{13 Val tRNA}
1280083	1280159	-	77	111017022	RHA1_ro01209	-	^{16 Met tRNA}
1281843	1281915	-	73	111017022	RHA1_ro01212	-	^{07 Asn tRNA}
1449081	1449157	-	77	111017022	RHA1_ro01374	-	^{03 Pro tRNA}
1449297	1449370	+	74	111017022	RHA1_ro01375	-	^{01 Gly tRNA}
1475561	1475633	+	73	111017022	RHA1_ro01399	-	^{11 Arg tRNA}
1494475	1494550	+	76	111017022	RHA1_ro01419	-	^{09 His tRNA}
1496141	1496213	+	73	111017022	RHA1_ro01421	-	^{10 Lys tRNA}
1509549	1509633	+	85	111017022	RHA1_ro01429	-	^{15 Leu tRNA}
1544486	1544605	-	120	111017022	RHA1_ro01465	-	5S ribosomal RNA
1544737	1547873	-	3137	111017022	RHA1_ro01466	-	23S ribosomal RNA
1548205	1549723	-	1519	111017022	RHA1_ro01467	-	16S ribosomal RNA
1578369	1578444	+	76	111017022	RHA1_ro01494	-	^{11 Arg tRNA}
1618773	1618844	-	72	111017022	RHA1_ro01535	-	^{19 Cys tRNA}
2105387	2105462	-	76	111017022	RHA1_ro01982	-	^{20 Trp tRNA}
2106941	2107013	-	73	111017022	RHA1_ro01986	-	^{16 Met tRNA}
2107059	2107131	-	73	111017022	RHA1_ro01987	-	^{12 Thr tRNA}
2107347	2107429	-	83	111017022	RHA1_ro01988	-	^{18 Tyr tRNA}
2399540	2399612	+	73	111017022	RHA1_ro02272	-	^{11 Arg tRNA}
2482901	2482977	+	77	111017022	RHA1_ro02354	-	^{16 Met tRNA}
3893687	3893760	+	74	111017022	RHA1_ro03682	-	^{14 Ile tRNA}
3893881	3893953	+	73	111017022	RHA1_ro03683	-	^{02 Ala tRNA}
3912642	3912727	+	86	111017022	RHA1_ro03704	-	^{15 Leu tRNA}
4138438	4139956	+	1519	111017022	RHA1_ro03936	-	16S ribosomal RNA
4140307	4143443	+	3137	111017022	RHA1_ro03938	-	23S ribosomal RNA
4143573	4143692	+	120	111017022	RHA1_ro03939	-	5S ribosomal RNA
4337966	4338053	+	88	111017022	RHA1_ro04120	-	^{08 Ser tRNA}
4346329	4346420	+	92	111017022	RHA1_ro04130	-	^{08 Ser tRNA}
4346466	4346541	+	76	111017022	RHA1_ro04131	-	^{11 Arg tRNA}
4365972	4366062	+	91	111017022	RHA1_ro04156	-	^{08 Ser tRNA}
4398265	4398352	-	88	111017022	RHA1_ro04190	-	^{08 Ser tRNA}
4399035	4399126	+	92	111017022	RHA1_ro04192	-	signal recognition particle
4542335	4542408	-	74	111017022	RHA1_ro04312	-	^{03 Pro tRNA}
4588706	4588778	+	73	111017022	RHA1_ro04355	-	^{12 Thr tRNA}
4590278	4591796	+	1519	111017022	RHA1_ro04359	-	16S ribosomal RNA
4592147	4595283	+	3137	111017022	RHA1_ro04360	-	23S ribosomal RNA
4595413	4595532	+	120	111017022	RHA1_ro04361	-	5S ribosomal RNA
4991366	4991440	+	75	111017022	RHA1_ro04720	-	^{12 Thr tRNA}
5145867	5145939	-	73	111017022	RHA1_ro04876	-	^{10 Lys tRNA}
5147023	5147095	+	73	111017022	RHA1_ro04878	-	^{04 Glu tRNA}
5147192	5147268	+	77	111017022	RHA1_ro04879	-	^{06 Asp tRNA}
5147332	5147408	+	77	111017022	RHA1_ro04880	-	^{17 Phe tRNA}
5689362	5689435	-	74	111017022	RHA1_ro05339	-	^{01 Gly tRNA}
6060079	6060154	+	76	111017022	RHA1_ro05636	-	^{02 Ala tRNA}
6152131	6152201	-	71	111017022	RHA1_ro05725	-	^{05 Gln tRNA}
6218969	6219045	+	77	111017022	RHA1_ro05781	-	^{15 Leu tRNA}
6890362	6890438	+	77	111017022	RHA1_ro06392	-	^{16 Met tRNA}
6913765	6913837	+	73	111017022	RHA1_ro06417	-	^{02 Ala tRNA}
6994134	6994205	+	72	111017022	RHA1_ro06494	-	^{05 Gln tRNA}
6994282	6994357	+	76	111017022	RHA1_ro06495	-	^{04 Glu tRNA}
7227213	7227285	-	73	111017022	RHA1_ro06714	-	^{01 Gly tRNA}
7388745	7388819	-	75	111017022	RHA1_ro06870	-	^{13 Val tRNA}
7388836	7388908	-	73	111017022	RHA1_ro06871	-	^{01 Gly tRNA}
7388983	7389057	-	75	111017022	RHA1_ro06872	-	^{13 Val tRNA}
7389059	7389129	-	71	111017022	RHA1_ro06873	-	^{19 Cys tRNA}
7389151	7389226	-	76	111017022	RHA1_ro06874	-	^{01 Gly tRNA}
7389469	7389540	+	72	111017022	RHA1_ro06875	-	^{13 Val tRNA}