Геном прокариот/Материалы:NC 008751

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   LOCUS       NC_008751            3462887 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome.
   ACCESSION   NC_008751
   VERSION     NC_008751.1  GI:120601051
   KEYWORDS    .
   SOURCE      Desulfovibrio vulgaris subsp. vulgaris DP4
     ORGANISM  Desulfovibrio vulgaris subsp. vulgaris DP4
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3462887)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Desulfovibrio vulgaris subsp.
               vulgaris DP4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3462887)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3462887)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (19-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000527.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001787
               Source DNA and bacteria available from Christopher Walker
               (cbwalkdr@u.washington.edu)
               Contacts: Christopher Walker (cbwalkdr@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
99713 99789 + 77 120601051 Dvul_R0001 - 11 Arg tRNA
158223 158298 - 76 120601051 Dvul_R0002 - 09 His tRNA
169323 169398 + 76 120601051 Dvul_R0003 - 17 Phe tRNA
304756 304831 + 76 120601051 Dvul_R0004 - 13 Val tRNA
340180 341720 + 1541 120601051 Dvul_R0005 - 16S ribosomal RNA
341793 341869 + 77 120601051 Dvul_R0006 - 14 Ile tRNA
341892 341967 + 76 120601051 Dvul_R0007 - 02 Ala tRNA
342116 345055 + 2940 120601051 Dvul_R0008 - 23S ribosomal RNA
345146 345268 + 123 120601051 Dvul_R0009 - 5S ribosomal RNA
428376 428452 - 77 120601051 Dvul_R0010 - 03 Pro tRNA
530198 530275 - 78 120601051 Dvul_R0011 - 04 Glu tRNA
530293 530367 - 75 120601051 Dvul_R0012 - 05 Gln tRNA
571338 571414 - 77 120601051 Dvul_R0013 - 20 Trp tRNA
572833 572908 - 76 120601051 Dvul_R0014 - 12 Thr tRNA
572945 573021 - 77 120601051 Dvul_R0015 - 01 Gly tRNA
573079 573164 - 86 120601051 Dvul_R0016 - 18 Tyr tRNA
573171 573246 - 76 120601051 Dvul_R0017 - 12 Thr tRNA
614527 614603 + 77 120601051 Dvul_R0018 - 11 Arg tRNA
724000 724086 + 87 120601051 Dvul_R0019 - 15 Leu tRNA
826078 827618 + 1541 120601051 Dvul_R0021 - 16S ribosomal RNA
827691 827767 + 77 120601051 Dvul_R0022 - 14 Ile tRNA
827790 827865 + 76 120601051 Dvul_R0023 - 02 Ala tRNA
828015 830954 + 2940 120601051 Dvul_R0024 - 23S ribosomal RNA
831045 831167 + 123 120601051 Dvul_R0025 - 5S ribosomal RNA
832606 832692 + 87 120601051 Dvul_R0026 - 15 Leu tRNA
872408 872482 + 75 120601051 Dvul_R0027 - 13 Val tRNA
959374 960914 + 1541 120601051 Dvul_R0028 - 16S ribosomal RNA
960987 961063 + 77 120601051 Dvul_R0029 - 14 Ile tRNA
961086 961161 + 76 120601051 Dvul_R0030 - 02 Ala tRNA
961311 964250 + 2940 120601051 Dvul_R0031 - 23S ribosomal RNA
964341 964463 + 123 120601051 Dvul_R0032 - 5S ribosomal RNA
964494 964621 + 128 120601051 Dvul_R0032a - 5S ribosomal RNA
1030027 1030102 - 76 120601051 Dvul_R0033 - 07 Asn tRNA
1093409 1093484 - 76 120601051 Dvul_R0034 - 07 Asn tRNA
1210600 1210675 - 76 120601051 Dvul_R0035 - 02 Ala tRNA
1262777 1262851 - 75 120601051 Dvul_R0036 - 01 Gly tRNA
1272781 1272857 - 77 120601051 Dvul_R0037 - Xaa tRNA
1316062 1316136 - 75 120601051 Dvul_R0038 - 01 Gly tRNA
1316169 1316243 - 75 120601051 Dvul_R0039 - 01 Gly tRNA
1316251 1316325 - 75 120601051 Dvul_R0040 - 19 Cys tRNA
1316337 1316411 - 75 120601051 Dvul_R0041 - 01 Gly tRNA
1403157 1403234 - 78 120601051 Dvul_R0042 - 03 Pro tRNA
1437492 1437568 + 77 120601051 Dvul_R0043 - 16 Met tRNA
1450414 1450500 - 87 120601051 Dvul_R0044 - 15 Leu tRNA
1597791 1598139 - 349 120601051 Dvul_R0045 - tmRNA
1697485 1697561 - 77 120601051 Dvul_R0046 - 11 Arg tRNA
1712385 1712471 + 87 120601051 Dvul_R0047 - 15 Leu tRNA
1728025 1728101 + 77 120601051 Dvul_R0048 - 16 Met tRNA
1744636 1744712 + 77 120601051 Dvul_R0049 - 03 Pro tRNA
1848102 1848177 + 76 120601051 Dvul_R0050 - 05 Gln tRNA
1857954 1858030 + 77 120601051 Dvul_R0051 - 11 Arg tRNA
1858063 1858139 + 77 120601051 Dvul_R0052 - 11 Arg tRNA
1858159 1858235 + 77 120601051 Dvul_R0053 - 11 Arg tRNA
1902414 1902508 + 95 120601051 Dvul_R0054 - 08 Ser tRNA
1922798 1922873 + 76 120601051 Dvul_R0055 - 16 Met tRNA
1924840 1925140 + 301 120601051 Dvul_R0056 - RNaseP RNA
2047938 2048022 - 85 120601051 Dvul_R0057 - 15 Leu tRNA
2088048 2088137 + 90 120601051 Dvul_R0058 - Sec tRNA
2212198 2212273 - 76 120601051 Dvul_R0059 - 12 Thr tRNA
2322537 2322612 + 76 120601051 Dvul_R0060 - 10 Lys tRNA
2322804 2322879 + 76 120601051 Dvul_R0061 - 10 Lys tRNA
2504953 2505047 + 95 120601051 Dvul_R0062 - 08 Ser tRNA
2536797 2536888 + 92 120601051 Dvul_R0063 - 08 Ser tRNA
2536919 2537007 + 89 120601051 Dvul_R0064 - SRP RNA; RNA component of signal recognition particle
2638747 2638838 - 92 120601051 Dvul_R0065 - 08 Ser tRNA
2705208 2705284 - 77 120601051 Dvul_R0066 - 04 Glu tRNA
2741825 2741901 + 77 120601051 Dvul_R0067 - 04 Glu tRNA
2897373 2897459 + 87 120601051 Dvul_R0068 - 15 Leu tRNA
3051249 3051325 - 77 120601051 Dvul_R0069 - 16 Met tRNA
3061254 3061329 + 76 120601051 Dvul_R0070 - 12 Thr tRNA
3149494 3149570 - 77 120601051 Dvul_R0071 - 06 Asp tRNA
3149642 3149718 - 77 120601051 Dvul_R0072 - 06 Asp tRNA
3149722 3149797 - 76 120601051 Dvul_R0073 - 13 Val tRNA
3168605 3168727 - 123 120601051 Dvul_R0074 - 5S ribosomal RNA
3168818 3171757 - 2940 120601051 Dvul_R0075 - 23S ribosomal RNA
3171905 3171980 - 76 120601051 Dvul_R0076 - 02 Ala tRNA
3172003 3172079 - 77 120601051 Dvul_R0077 - 14 Ile tRNA
3172154 3173694 - 1541 120601051 Dvul_R0078 - 16S ribosomal RNA
3197980 3198055 + 76 120601051 Dvul_R0079 - 10 Lys tRNA
3276288 3276374 + 87 120601051 Dvul_R0080 - 15 Leu tRNA
3355199 3355321 - 123 120601051 Dvul_R0081 - 5S ribosomal RNA
3355412 3358351 - 2940 120601051 Dvul_R0082 - 23S ribosomal RNA
3358499 3358574 - 76 120601051 Dvul_R0083 - 02 Ala tRNA
3358597 3358673 - 77 120601051 Dvul_R0084 - 14 Ile tRNA
3358748 3360288 - 1541 120601051 Dvul_R0085 - 16S ribosomal RNA
3444040 3444115 - 76 120601051 Dvul_R0086 - 02 Ala tRNA
3454190 3454265 - 76 120601051 Dvul_R0087 - 02 Ala tRNA