Геном прокариот/Материалы:NC 008751

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008751            3462887 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome.
   ACCESSION   NC_008751
   VERSION     NC_008751.1  GI:120601051
   KEYWORDS    .
   SOURCE      Desulfovibrio vulgaris subsp. vulgaris DP4
     ORGANISM  Desulfovibrio vulgaris subsp. vulgaris DP4
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3462887)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Desulfovibrio vulgaris subsp.
               vulgaris DP4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3462887)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3462887)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S.,
               Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (19-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000527.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001787
               Source DNA and bacteria available from Christopher Walker
               (cbwalkdr@u.washington.edu)
               Contacts: Christopher Walker (cbwalkdr@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
99713	99789	+	77	120601051	Dvul_R0001	-	^{11 Arg tRNA}
158223	158298	-	76	120601051	Dvul_R0002	-	^{09 His tRNA}
169323	169398	+	76	120601051	Dvul_R0003	-	^{17 Phe tRNA}
304756	304831	+	76	120601051	Dvul_R0004	-	^{13 Val tRNA}
340180	341720	+	1541	120601051	Dvul_R0005	-	16S ribosomal RNA
341793	341869	+	77	120601051	Dvul_R0006	-	^{14 Ile tRNA}
341892	341967	+	76	120601051	Dvul_R0007	-	^{02 Ala tRNA}
342116	345055	+	2940	120601051	Dvul_R0008	-	23S ribosomal RNA
345146	345268	+	123	120601051	Dvul_R0009	-	5S ribosomal RNA
428376	428452	-	77	120601051	Dvul_R0010	-	^{03 Pro tRNA}
530198	530275	-	78	120601051	Dvul_R0011	-	^{04 Glu tRNA}
530293	530367	-	75	120601051	Dvul_R0012	-	^{05 Gln tRNA}
571338	571414	-	77	120601051	Dvul_R0013	-	^{20 Trp tRNA}
572833	572908	-	76	120601051	Dvul_R0014	-	^{12 Thr tRNA}
572945	573021	-	77	120601051	Dvul_R0015	-	^{01 Gly tRNA}
573079	573164	-	86	120601051	Dvul_R0016	-	^{18 Tyr tRNA}
573171	573246	-	76	120601051	Dvul_R0017	-	^{12 Thr tRNA}
614527	614603	+	77	120601051	Dvul_R0018	-	^{11 Arg tRNA}
724000	724086	+	87	120601051	Dvul_R0019	-	^{15 Leu tRNA}
826078	827618	+	1541	120601051	Dvul_R0021	-	16S ribosomal RNA
827691	827767	+	77	120601051	Dvul_R0022	-	^{14 Ile tRNA}
827790	827865	+	76	120601051	Dvul_R0023	-	^{02 Ala tRNA}
828015	830954	+	2940	120601051	Dvul_R0024	-	23S ribosomal RNA
831045	831167	+	123	120601051	Dvul_R0025	-	5S ribosomal RNA
832606	832692	+	87	120601051	Dvul_R0026	-	^{15 Leu tRNA}
872408	872482	+	75	120601051	Dvul_R0027	-	^{13 Val tRNA}
959374	960914	+	1541	120601051	Dvul_R0028	-	16S ribosomal RNA
960987	961063	+	77	120601051	Dvul_R0029	-	^{14 Ile tRNA}
961086	961161	+	76	120601051	Dvul_R0030	-	^{02 Ala tRNA}
961311	964250	+	2940	120601051	Dvul_R0031	-	23S ribosomal RNA
964341	964463	+	123	120601051	Dvul_R0032	-	5S ribosomal RNA
964494	964621	+	128	120601051	Dvul_R0032a	-	5S ribosomal RNA
1030027	1030102	-	76	120601051	Dvul_R0033	-	^{07 Asn tRNA}
1093409	1093484	-	76	120601051	Dvul_R0034	-	^{07 Asn tRNA}
1210600	1210675	-	76	120601051	Dvul_R0035	-	^{02 Ala tRNA}
1262777	1262851	-	75	120601051	Dvul_R0036	-	^{01 Gly tRNA}
1272781	1272857	-	77	120601051	Dvul_R0037	-	Xaa tRNA
1316062	1316136	-	75	120601051	Dvul_R0038	-	^{01 Gly tRNA}
1316169	1316243	-	75	120601051	Dvul_R0039	-	^{01 Gly tRNA}
1316251	1316325	-	75	120601051	Dvul_R0040	-	^{19 Cys tRNA}
1316337	1316411	-	75	120601051	Dvul_R0041	-	^{01 Gly tRNA}
1403157	1403234	-	78	120601051	Dvul_R0042	-	^{03 Pro tRNA}
1437492	1437568	+	77	120601051	Dvul_R0043	-	^{16 Met tRNA}
1450414	1450500	-	87	120601051	Dvul_R0044	-	^{15 Leu tRNA}
1597791	1598139	-	349	120601051	Dvul_R0045	-	tmRNA
1697485	1697561	-	77	120601051	Dvul_R0046	-	^{11 Arg tRNA}
1712385	1712471	+	87	120601051	Dvul_R0047	-	^{15 Leu tRNA}
1728025	1728101	+	77	120601051	Dvul_R0048	-	^{16 Met tRNA}
1744636	1744712	+	77	120601051	Dvul_R0049	-	^{03 Pro tRNA}
1848102	1848177	+	76	120601051	Dvul_R0050	-	^{05 Gln tRNA}
1857954	1858030	+	77	120601051	Dvul_R0051	-	^{11 Arg tRNA}
1858063	1858139	+	77	120601051	Dvul_R0052	-	^{11 Arg tRNA}
1858159	1858235	+	77	120601051	Dvul_R0053	-	^{11 Arg tRNA}
1902414	1902508	+	95	120601051	Dvul_R0054	-	^{08 Ser tRNA}
1922798	1922873	+	76	120601051	Dvul_R0055	-	^{16 Met tRNA}
1924840	1925140	+	301	120601051	Dvul_R0056	-	RNaseP RNA
2047938	2048022	-	85	120601051	Dvul_R0057	-	^{15 Leu tRNA}
2088048	2088137	+	90	120601051	Dvul_R0058	-	Sec tRNA
2212198	2212273	-	76	120601051	Dvul_R0059	-	^{12 Thr tRNA}
2322537	2322612	+	76	120601051	Dvul_R0060	-	^{10 Lys tRNA}
2322804	2322879	+	76	120601051	Dvul_R0061	-	^{10 Lys tRNA}
2504953	2505047	+	95	120601051	Dvul_R0062	-	^{08 Ser tRNA}
2536797	2536888	+	92	120601051	Dvul_R0063	-	^{08 Ser tRNA}
2536919	2537007	+	89	120601051	Dvul_R0064	-	SRP RNA; RNA component of signal recognition particle
2638747	2638838	-	92	120601051	Dvul_R0065	-	^{08 Ser tRNA}
2705208	2705284	-	77	120601051	Dvul_R0066	-	^{04 Glu tRNA}
2741825	2741901	+	77	120601051	Dvul_R0067	-	^{04 Glu tRNA}
2897373	2897459	+	87	120601051	Dvul_R0068	-	^{15 Leu tRNA}
3051249	3051325	-	77	120601051	Dvul_R0069	-	^{16 Met tRNA}
3061254	3061329	+	76	120601051	Dvul_R0070	-	^{12 Thr tRNA}
3149494	3149570	-	77	120601051	Dvul_R0071	-	^{06 Asp tRNA}
3149642	3149718	-	77	120601051	Dvul_R0072	-	^{06 Asp tRNA}
3149722	3149797	-	76	120601051	Dvul_R0073	-	^{13 Val tRNA}
3168605	3168727	-	123	120601051	Dvul_R0074	-	5S ribosomal RNA
3168818	3171757	-	2940	120601051	Dvul_R0075	-	23S ribosomal RNA
3171905	3171980	-	76	120601051	Dvul_R0076	-	^{02 Ala tRNA}
3172003	3172079	-	77	120601051	Dvul_R0077	-	^{14 Ile tRNA}
3172154	3173694	-	1541	120601051	Dvul_R0078	-	16S ribosomal RNA
3197980	3198055	+	76	120601051	Dvul_R0079	-	^{10 Lys tRNA}
3276288	3276374	+	87	120601051	Dvul_R0080	-	^{15 Leu tRNA}
3355199	3355321	-	123	120601051	Dvul_R0081	-	5S ribosomal RNA
3355412	3358351	-	2940	120601051	Dvul_R0082	-	23S ribosomal RNA
3358499	3358574	-	76	120601051	Dvul_R0083	-	^{02 Ala tRNA}
3358597	3358673	-	77	120601051	Dvul_R0084	-	^{14 Ile tRNA}
3358748	3360288	-	1541	120601051	Dvul_R0085	-	16S ribosomal RNA
3444040	3444115	-	76	120601051	Dvul_R0086	-	^{02 Ala tRNA}
3454190	3454265	-	76	120601051	Dvul_R0087	-	^{02 Ala tRNA}