Геном прокариот/Материалы:NC 009674

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009674            4087024 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome.
   ACCESSION   NC_009674
   VERSION     NC_009674.1  GI:152973854
   KEYWORDS    .
   SOURCE      Bacillus cereus subsp. cytotoxis NVH 391-98
     ORGANISM  Bacillus cereus subsp. cytotoxis NVH 391-98
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 4087024)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
               Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
               Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Bacillus cereus subsp. cytotoxis
               NVH 391-98
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4087024)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4087024)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M.,
               Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D.,
               Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000764.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000557
               Source DNA and bacteria available from Alexei Sorokin
               (alexei.sorokine@jouy.inra.fr)
               Contacts: Alexei Sorokin (alexei.sorokine@jouy.inra.fr)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of a least two independent clones. Each
               base pair has a minumum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional notes:
               Bacillus cereus NVH 398-91 was originally isolated as a contaminant
               of vegetable puree in a retirement house in Essone (France) by
               Marie-Laure De Buyser (AFSSA, France). The strain was identified as
               a cause of a severe food poisoning case. It was further
               characterized biochemically and a novel cytotoxin K was identified
               as a major cause of epithelial cell lysis leading to necrotic
               enteritis (Lund et al, Mol Microbiol, 2000, 38, 254). Although the
               strain was identified as Bacillus cereus, it appeared to be
               different from all known strains. Detailed phylogenetic studies
               using MLST approach placed the strain rather far from main strain
               clusters, but confirmed that the strain belongs to the B. cereus
               group (Sorokin et al, Appl Env Microbiol, 2006, 72, 1569). Genomic
               sequence clearly indicated that the strain is very different from
               other representatives of the group and should be assigned a new
               species status, for which we propose a name Bacillus cytotoxis.
               However, assigning of the novel species status is hampered by the
               fact that only one such strain is described at the moment of
               genomic sequencing being done (2005).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9424	10967	+	1544	152973854	Bcer98_R0001	-	16S ribosomal RNA
11102	11178	+	77	152973854	Bcer98_R0002	-	^{14 Ile tRNA}
11187	11262	+	76	152973854	Bcer98_R0003	-	^{02 Ala tRNA}
11352	14259	+	2908	152973854	Bcer98_R0004	-	23S ribosomal RNA
14357	14471	+	115	152973854	Bcer98_R0005	-	5S ribosomal RNA
21927	22019	+	93	152973854	Bcer98_R0006	-	^{08 Ser tRNA}
25353	25456	+	104	152973854	Bcer98_R0007	-	SRP RNA; RNA component of signal recognition particle
29256	30799	+	1544	152973854	Bcer98_R0008	-	16S ribosomal RNA
30934	31010	+	77	152973854	Bcer98_R0009	-	^{14 Ile tRNA}
31019	31094	+	76	152973854	Bcer98_R0010	-	^{02 Ala tRNA}
31184	34090	+	2907	152973854	Bcer98_R0011	-	23S ribosomal RNA
34187	34301	+	115	152973854	Bcer98_R0012	-	5S ribosomal RNA
64784	64857	+	74	152973854	Bcer98_R0013	-	^{16 Met tRNA}
64872	64943	+	72	152973854	Bcer98_R0014	-	^{04 Glu tRNA}
82758	84301	+	1544	152973854	Bcer98_R0015	-	16S ribosomal RNA
84563	87469	+	2907	152973854	Bcer98_R0016	-	23S ribosomal RNA
87618	87732	+	115	152973854	Bcer98_R0017	-	5S ribosomal RNA
87736	87811	+	76	152973854	Bcer98_R0018	-	^{13 Val tRNA}
87817	87892	+	76	152973854	Bcer98_R0019	-	^{12 Thr tRNA}
87903	87978	+	76	152973854	Bcer98_R0020	-	^{10 Lys tRNA}
87993	88073	+	81	152973854	Bcer98_R0021	-	^{15 Leu tRNA}
88103	88177	+	75	152973854	Bcer98_R0022	-	^{01 Gly tRNA}
88188	88276	+	89	152973854	Bcer98_R0023	-	^{15 Leu tRNA}
88280	88353	+	74	152973854	Bcer98_R0024	-	^{11 Arg tRNA}
88362	88435	+	74	152973854	Bcer98_R0025	-	^{03 Pro tRNA}
88446	88521	+	76	152973854	Bcer98_R0026	-	^{02 Ala tRNA}
88601	90144	+	1544	152973854	Bcer98_R0027	-	16S ribosomal RNA
90405	93311	+	2907	152973854	Bcer98_R0028	-	23S ribosomal RNA
93408	93522	+	115	152973854	Bcer98_R0029	-	5S ribosomal RNA
151867	153410	+	1544	152973854	Bcer98_R0030	-	16S ribosomal RNA
153672	156578	+	2907	152973854	Bcer98_R0031	-	23S ribosomal RNA
156728	156842	+	115	152973854	Bcer98_R0032	-	5S ribosomal RNA
156850	156924	+	75	152973854	Bcer98_R0033	-	^{07 Asn tRNA}
156929	157001	+	73	152973854	Bcer98_R0034	-	^{12 Thr tRNA}
157025	157099	+	75	152973854	Bcer98_R0035	-	^{04 Glu tRNA}
157105	157180	+	76	152973854	Bcer98_R0036	-	^{13 Val tRNA}
157190	157273	+	84	152973854	Bcer98_R0037	-	^{18 Tyr tRNA}
157337	157411	+	75	152973854	Bcer98_R0038	-	^{05 Gln tRNA}
157417	157492	+	76	152973854	Bcer98_R0039	-	^{10 Lys tRNA}
157498	157569	+	72	152973854	Bcer98_R0040	-	^{01 Gly tRNA}
157580	157652	+	73	152973854	Bcer98_R0041	-	^{02 Ala tRNA}
255339	255410	+	72	152973854	Bcer98_R0042	-	^{07 Asn tRNA}
255417	255507	+	91	152973854	Bcer98_R0043	-	^{08 Ser tRNA}
255514	255588	+	75	152973854	Bcer98_R0044	-	^{04 Glu tRNA}
255594	255669	+	76	152973854	Bcer98_R0045	-	^{13 Val tRNA}
255705	255780	+	76	152973854	Bcer98_R0046	-	^{06 Asp tRNA}
255855	255929	+	75	152973854	Bcer98_R0047	-	^{05 Gln tRNA}
255935	256007	+	73	152973854	Bcer98_R0048	-	^{10 Lys tRNA}
256023	256103	+	81	152973854	Bcer98_R0049	-	^{15 Leu tRNA}
256107	256192	+	86	152973854	Bcer98_R0050	-	^{15 Leu tRNA}
256284	256360	+	77	152973854	Bcer98_R0051	-	^{11 Arg tRNA}
256365	256441	+	77	152973854	Bcer98_R0052	-	^{03 Pro tRNA}
256443	256513	+	71	152973854	Bcer98_R0053	-	^{01 Gly tRNA}
256593	258136	+	1544	152973854	Bcer98_R0054	-	16S ribosomal RNA
258398	261304	+	2907	152973854	Bcer98_R0055	-	23S ribosomal RNA
261401	261515	+	115	152973854	Bcer98_R0056	-	5S ribosomal RNA
261525	261601	+	77	152973854	Bcer98_R0057	-	^{16 Met tRNA}
261605	261680	+	76	152973854	Bcer98_R0058	-	^{06 Asp tRNA}
277345	278888	+	1544	152973854	Bcer98_R0059	-	16S ribosomal RNA
279156	282063	+	2908	152973854	Bcer98_R0060	-	23S ribosomal RNA
282161	282275	+	115	152973854	Bcer98_R0061	-	5S ribosomal RNA
285014	286557	+	1544	152973854	Bcer98_R0062	-	16S ribosomal RNA
286819	289726	+	2908	152973854	Bcer98_R0063	-	23S ribosomal RNA
289824	289938	+	115	152973854	Bcer98_R0064	-	5S ribosomal RNA
295269	296812	+	1544	152973854	Bcer98_R0065	-	16S ribosomal RNA
297075	299981	+	2907	152973854	Bcer98_R0066	-	23S ribosomal RNA
300078	300192	+	115	152973854	Bcer98_R0067	-	5S ribosomal RNA
302785	304328	+	1544	152973854	Bcer98_R0068	-	16S ribosomal RNA
304590	307497	+	2908	152973854	Bcer98_R0069	-	23S ribosomal RNA
307595	307709	+	115	152973854	Bcer98_R0070	-	5S ribosomal RNA
515522	517065	+	1544	152973854	Bcer98_R0071	-	16S ribosomal RNA
517327	520233	+	2907	152973854	Bcer98_R0072	-	23S ribosomal RNA
520387	520501	+	115	152973854	Bcer98_R0073	-	5S ribosomal RNA
520509	520583	+	75	152973854	Bcer98_R0074	-	^{07 Asn tRNA}
520589	520680	+	92	152973854	Bcer98_R0075	-	^{08 Ser tRNA}
520693	520767	+	75	152973854	Bcer98_R0076	-	^{04 Glu tRNA}
520773	520848	+	76	152973854	Bcer98_R0077	-	^{13 Val tRNA}
520872	520948	+	77	152973854	Bcer98_R0078	-	^{16 Met tRNA}
520952	521027	+	76	152973854	Bcer98_R0079	-	^{06 Asp tRNA}
521036	521111	+	76	152973854	Bcer98_R0080	-	^{17 Phe tRNA}
521126	521201	+	76	152973854	Bcer98_R0081	-	^{12 Thr tRNA}
521211	521294	+	84	152973854	Bcer98_R0082	-	^{18 Tyr tRNA}
521302	521375	+	74	152973854	Bcer98_R0083	-	^{20 Trp tRNA}
521386	521461	+	76	152973854	Bcer98_R0084	-	^{09 His tRNA}
521575	521649	+	75	152973854	Bcer98_R0085	-	^{05 Gln tRNA}
521654	521728	+	75	152973854	Bcer98_R0086	-	^{01 Gly tRNA}
521739	521809	+	71	152973854	Bcer98_R0087	-	^{19 Cys tRNA}
521821	521902	+	82	152973854	Bcer98_R0088	-	^{15 Leu tRNA}
529172	529245	+	74	152973854	Bcer98_R0089	-	^{01 Gly tRNA}
691784	693327	+	1544	152973854	Bcer98_R0090	-	16S ribosomal RNA
693589	696495	+	2907	152973854	Bcer98_R0091	-	23S ribosomal RNA
696722	696836	+	115	152973854	Bcer98_R0092	-	5S ribosomal RNA
696840	696915	+	76	152973854	Bcer98_R0093	-	^{13 Val tRNA}
696925	697008	+	84	152973854	Bcer98_R0094	-	^{18 Tyr tRNA}
697019	697093	+	75	152973854	Bcer98_R0095	-	^{05 Gln tRNA}
697099	697174	+	76	152973854	Bcer98_R0096	-	^{10 Lys tRNA}
697188	697268	+	81	152973854	Bcer98_R0097	-	^{15 Leu tRNA}
697298	697372	+	75	152973854	Bcer98_R0098	-	^{01 Gly tRNA}
697383	697471	+	89	152973854	Bcer98_R0099	-	^{15 Leu tRNA}
697475	697551	+	77	152973854	Bcer98_R0100	-	^{11 Arg tRNA}
697556	697629	+	74	152973854	Bcer98_R0101	-	^{03 Pro tRNA}
697640	697712	+	73	152973854	Bcer98_R0102	-	^{02 Ala tRNA}
697727	697819	+	93	152973854	Bcer98_R0103	-	^{08 Ser tRNA}
697879	697968	+	90	152973854	Bcer98_R0104	-	^{08 Ser tRNA}
697988	698064	+	77	152973854	Bcer98_R0105	-	^{16 Met tRNA}
698068	698143	+	76	152973854	Bcer98_R0106	-	^{06 Asp tRNA}
698152	698227	+	76	152973854	Bcer98_R0107	-	^{17 Phe tRNA}
698242	698314	+	73	152973854	Bcer98_R0108	-	^{12 Thr tRNA}
698321	698391	+	71	152973854	Bcer98_R0109	-	^{20 Trp tRNA}
698403	698479	+	77	152973854	Bcer98_R0110	-	^{14 Ile tRNA}
698486	698560	+	75	152973854	Bcer98_R0111	-	^{07 Asn tRNA}
698562	698633	+	72	152973854	Bcer98_R0112	-	^{04 Glu tRNA}
1112860	1112932	-	73	152973854	Bcer98_R0113	-	^{13 Val tRNA}
1387173	1387525	+	353	152973854	Bcer98_R0114	-	RNA component of RNaseP
3053375	3053448	-	74	152973854	Bcer98_R0115	-	^{16 Met tRNA}
3270012	3270088	-	77	152973854	Bcer98_R0116	-	^{11 Arg tRNA}
3270090	3270163	-	74	152973854	Bcer98_R0117	-	^{01 Gly tRNA}
3569879	3569950	-	72	152973854	Bcer98_R0118	-	^{04 Glu tRNA}
3569958	3570048	-	91	152973854	Bcer98_R0119	-	^{08 Ser tRNA}
3570053	3570127	-	75	152973854	Bcer98_R0120	-	^{07 Asn tRNA}
3570132	3570208	-	77	152973854	Bcer98_R0121	-	^{14 Ile tRNA}
3570220	3570290	-	71	152973854	Bcer98_R0122	-	^{01 Gly tRNA}
3570304	3570379	-	76	152973854	Bcer98_R0123	-	^{10 Lys tRNA}
3570390	3570465	-	76	152973854	Bcer98_R0124	-	^{12 Thr tRNA}
3570480	3570555	-	76	152973854	Bcer98_R0125	-	^{17 Phe tRNA}
3570565	3570640	-	76	152973854	Bcer98_R0126	-	^{06 Asp tRNA}
3570642	3570718	-	77	152973854	Bcer98_R0127	-	^{16 Met tRNA}
3570738	3570830	-	93	152973854	Bcer98_R0128	-	^{08 Ser tRNA}
3570848	3570924	-	77	152973854	Bcer98_R0129	-	^{16 Met tRNA}
3570929	3571005	-	77	152973854	Bcer98_R0130	-	^{16 Met tRNA}
3571023	3571095	-	73	152973854	Bcer98_R0131	-	^{02 Ala tRNA}
3571110	3571183	-	74	152973854	Bcer98_R0132	-	^{03 Pro tRNA}
3571192	3571265	-	74	152973854	Bcer98_R0133	-	^{11 Arg tRNA}
3571269	3571357	-	89	152973854	Bcer98_R0134	-	^{15 Leu tRNA}
3571368	3571442	-	75	152973854	Bcer98_R0135	-	^{01 Gly tRNA}
3571472	3571552	-	81	152973854	Bcer98_R0136	-	^{15 Leu tRNA}
3571571	3571646	-	76	152973854	Bcer98_R0137	-	^{09 His tRNA}
3571656	3571731	-	76	152973854	Bcer98_R0138	-	^{12 Thr tRNA}
3571737	3571812	-	76	152973854	Bcer98_R0139	-	^{13 Val tRNA}
3571816	3571930	-	115	152973854	Bcer98_R0140	-	5S ribosomal RNA
3572079	3574985	-	2907	152973854	Bcer98_R0141	-	23S ribosomal RNA
3575247	3576790	-	1544	152973854	Bcer98_R0142	-	16S ribosomal RNA
3731017	3731374	-	358	152973854	Bcer98_R0143	-	tmRNA
3746250	3746328	-	79	152973854	Bcer98_R0144	-	^{11 Arg tRNA}
4065917	4065989	-	73	152973854	Bcer98_R0145	-	^{17 Phe tRNA}
4066032	4066107	-	76	152973854	Bcer98_R0146	-	^{06 Asp tRNA}
4066120	4066191	-	72	152973854	Bcer98_R0147	-	^{04 Glu tRNA}
4066205	4066280	-	76	152973854	Bcer98_R0148	-	^{10 Lys tRNA}