Геном прокариот/Материалы:NC 002488
Внешний вид
Базовый уровень статей | |
LOCUS NC_002488 2679306 bp DNA circular BCT 02-DEC-2005 DEFINITION Xylella fastidiosa 9a5c, complete genome. ACCESSION NC_002488 VERSION NC_002488.3 GI:57014152 KEYWORDS . SOURCE Xylella fastidiosa 9a5c ORGANISM Xylella fastidiosa 9a5c Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella. REFERENCE 1 (bases 1 to 2679306) AUTHORS Simpson,A.J.G., Reinach,F.C., Arruda,P., Abreu,F.A., Acencio,M., Alvarenga,R., Alves,L.M.C., Araya,J.E., Baia,G.S., Baptista,C.S., Barros,M.H., Bonaccorsi,E.D., Bordin,S., Bove,J.M., Briones,M.R.S., Bueno,M.R.P., Camargo,A.A., Camargo,L.E.A., Carraro,D.M., Carrer,H., Colauto,N.B., Colombo,C., Costa,F.F., Costa,M.C.R., Costa-Neto,C.M., Coutinho,L.L., Cristofani,M., Dias-Neto,E., Docena,C., El-Dorry,H., Facincani,A.P., Ferreira,A.J.S., Ferreira,V.C.A., Ferro,J.A., Fraga,J.S., Franca,S.C., Franco,M.C., Frohme,M., Furlan,L.R., Garnier,M., Goldman,G.H., Goldman,M.H.S., Gomes,S.L., Gruber,A., Ho,P.L., Hoheisel,J.D., Junqueira,M.L., Kemper,E.L., Kitajima,J.P., Krieger,J.E., Kuramae,E.E., Laigret,F., Lambais,M.R., Leite,L.C.C., Lemos,E.G.M., Lemos,M.V.F., Lopes,S.A., Lopes,C.R., Machado,J.A., Machado,M.A., Madeira,A.M.B.N., Madeira,H.M.F., Marino,C.L., Marques,M.V., Martins,E.A.L., Martins,E.M.F., Matsukuma,A.Y., Menck,C.F.M., Miracca,E.C., Miyaki,C.Y., Monteiro-Vitorello,C.B., Moon,D.H., Nagai,M.A., Nascimento,A.L.T.O., Netto,L.E.S., Nhani,A. Jr., Nobrega,F.G., Nunes,L.R., Oliveira,M.A., de Oliveira,M.C., de Oliveira,R.C., Palmieri,D.A., Paris,A., Peixoto,B.R., Pereira,G.A.G., Pereira,H.A. Jr., Pesquero,J.B., Quaggio,R.B., Roberto,P.G., Rodrigues,V., de M. Rosa,A.J., de Rosa,V.E. Jr., de Sa,R.G., Santelli,R.V., Sawasaki,H.E., da Silva,A.C.R., da Silva,F.R., da Silva,A.M., Silva,W.A. Jr., da Silveira,J.F., Silvestri,M.L.Z., Siqueira,W.J., de Souza,A.A., de Souza,A.P., Terenzi,M.F., Truffi,D., Tsai,S.M., Tsuhako,M.H., Vallada,H., Van Sluys,M.A., Verjovski-Almeida,S., Vettore,A.L., Zago,M.A., Zatz,M., Meidanis,J. and Setubal,J.C. TITLE The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis JOURNAL Nature 406 (6792), 151-157 (2000) PUBMED 10910347 REFERENCE 2 (bases 1 to 2679306) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-OCT-2001) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2679306) AUTHORS Simpson,A.J.G., Reinach,F.C., Arruda,P., Abreu,F.A., Acencio,M., Alvarenga,R., Alves,L.M.C., Araya,J.E., Baia,G.S., Baptista,C.S., Barros,M.H., Bonaccorsi,E.D., Bordin,S., Bove,J.M., Briones,M.R.S., Bueno,M.R.P., Camargo,A.A., Camargo,L.E.A., Carraro,D.M., Carrer,H., Colauto,N.B., Colombo,C., Costa,F.F., Costa,M.C.R., Costa-Neto,C.M., Coutinho,L.L., Cristofani,M., Dias-Neto,E., Docena,C., El-Dorry,H., Facincani,A.P., Ferreira,A.J.S., Ferreira,V.C.A., Ferro,J.A., Fraga,J.S., Franca,S.C., Franco,M.C., Frohme,M., Furlan,L.R., Garnier,M., Goldman,G.H., Goldman,M.H.S., Gomes,S.L., Gruber,A., Ho,P.L., Hoheisel,J.D., Junqueira,M.L., Kemper,E.L., Kitajima,J.P., Krieger,J.E., Kuramae,E.E., Laigret,F., Lambais,M.R., Leite,L.C.C., Lemos,E.G.M., Lemos,M.V.F., Lopes,S.A., Lopes,C.R., Machado,J.A., Machado,M.A., Madeira,A.M.B.N., Madeira,H.M.F., Marino,C.L., Marques,M.V., Martins,E.A.L., Martins,E.M.F., Matsukuma,A.Y., Menck,C.F.M., Miracca,E.C., Miyaki,C.Y., Monteiro-Vitorello,C.B., Moon,D.H., Nagai,M.A., Nascimento,A.L.T.O., Netto,L.E.S., Nhani,A. Jr., Nobrega,F.G., Nunes,L.R., Oliveira,M.A., de Oliveira,M.C., de Oliveira,R.C., Palmieri,D.A., Paris,A., Peixoto,B.R., Pereira,G.A.G., Pereira,H.A. Jr., Pesquero,J.B., Quaggio,R.B., Roberto,P.G., Rodrigues,V., de M. Rosa,A.J., de Rosa,V.E. Jr., de Sa,R.G., Santelli,R.V., Sawasaki,H.E., da Silva,A.C.R., da Silva,F.R., da Silva,A.M., Silva,W.A. Jr., da Silveira,J.F., Silvestri,M.L.Z., Siqueira,W.J., de Souza,A.A., de Souza,A.P., Terenzi,M.F., Truffi,D., Tsai,S.M., Tsuhako,M.H., Vallada,H., Van Sluys,M.A., Verjovski-Almeida,S., Vettore,A.L., Zago,M.A., Zatz,M., Meidanis,J. and Setubal,J.C. TITLE Direct Submission JOURNAL Submitted (02-JUN-2000) Organization for Nucleotide Sequencing and Analysis, Bioinformatics Lab - IC/Unicamp, C.P. 6176, Campinas, SP 13083-970, Brazil COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AE003849. On Jan 4, 2005 this sequence version replaced gi:55294525. COMPLETENESS: full length.
Расположение РНК
[править]Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
20869 | 20945 | - | 77 | 57014152 | XFt01 | - | 16 Met tRNA |
62407 | 62483 | + | 77 | 57014152 | XFt02 | - | 11 Arg tRNA |
66558 | 68102 | + | 1545 | 57014152 | XFr01 | - | 16S ribosomal RNA |
68209 | 68284 | + | 76 | 57014152 | XFt03 | - | 02 Ala tRNA |
68298 | 68374 | + | 77 | 57014152 | XFt04 | - | 14 Ile tRNA |
68568 | 71449 | + | 2882 | 57014152 | XFr02 | - | 23S ribosomal RNA |
71586 | 71703 | + | 118 | 57014152 | XFr03 | - | 5S ribosomal RNA |
123996 | 124088 | + | 93 | 57014152 | XFt05 | - | 08 Ser tRNA |
172274 | 173818 | + | 1545 | 57014152 | XFr04 | - | 16S ribosomal RNA |
173925 | 174000 | + | 76 | 57014152 | XFt06 | - | 02 Ala tRNA |
174014 | 174090 | + | 77 | 57014152 | XFt07 | - | 14 Ile tRNA |
174284 | 177165 | + | 2882 | 57014152 | XFr05 | - | 23S ribosomal RNA |
177302 | 177419 | + | 118 | 57014152 | XFr06 | - | 5S ribosomal RNA |
224438 | 224513 | - | 76 | 57014152 | XFt08 | - | 02 Ala tRNA |
236040 | 236114 | - | 75 | 57014152 | XFt09 | - | 04 Glu tRNA |
242842 | 242918 | + | 77 | 57014152 | XFt10 | - | 16 Met tRNA |
308643 | 308718 | + | 76 | 57014152 | XFt11 | - | 17 Phe tRNA |
319058 | 319142 | + | 85 | 57014152 | XFt12 | - | 15 Leu tRNA |
405760 | 405834 | - | 75 | 57014152 | XFt13 | - | 05 Gln tRNA |
405880 | 405956 | - | 77 | 57014152 | XFt14 | - | 16 Met tRNA |
486925 | 487001 | + | 77 | 57014152 | XFt15 | - | 07 Asn tRNA |
615886 | 615973 | - | 88 | 57014152 | XFt16 | - | 08 Ser tRNA |
649104 | 649178 | + | 75 | 57014152 | XFt17 | - | 13 Val tRNA |
699322 | 699398 | + | 77 | 57014152 | XFt18 | - | 03 Pro tRNA |
732074 | 732147 | - | 74 | 57014152 | XFt19 | - | 01 Gly tRNA |
816524 | 816600 | - | 77 | 57014152 | XFt20 | - | 03 Pro tRNA |
926649 | 926723 | + | 75 | 57014152 | XFt21 | - | 13 Val tRNA |
1017853 | 1017939 | - | 87 | 57014152 | XFt22 | - | 15 Leu tRNA |
1018069 | 1018144 | - | 76 | 57014152 | XFt23 | - | 04 Glu tRNA |
1018198 | 1018273 | - | 76 | 57014152 | XFt24 | - | 02 Ala tRNA |
1078829 | 1078913 | - | 85 | 57014152 | XFt25 | - | 15 Leu tRNA |
1131233 | 1131319 | - | 87 | 57014152 | XFt26 | - | 15 Leu tRNA |
1135741 | 1135824 | - | 84 | 57014152 | XFt27 | - | 15 Leu tRNA |
1142842 | 1142916 | + | 75 | 57014152 | XFt28 | - | 13 Val tRNA |
1142947 | 1143023 | + | 77 | 57014152 | XFt29 | - | 06 Asp tRNA |
1191242 | 1191317 | - | 76 | 57014152 | XFt30 | - | 10 Lys tRNA |
1631333 | 1631409 | + | 77 | 57014152 | XFt31 | - | 11 Arg tRNA |
1638644 | 1638719 | + | 76 | 57014152 | XFt32 | - | 01 Gly tRNA |
1707512 | 1707587 | - | 76 | 57014152 | XFt33 | - | 12 Thr tRNA |
1720231 | 1720323 | - | 93 | 57014152 | XFt34 | - | 08 Ser tRNA |
1776435 | 1776510 | + | 76 | 57014152 | XFt35 | - | 10 Lys tRNA |
2004768 | 2004841 | + | 74 | 57014152 | XFt36 | - | 19 Cys tRNA |
2047010 | 2047100 | - | 91 | 57014152 | XFt37 | - | 08 Ser tRNA |
2193930 | 2194005 | - | 76 | 57014152 | XFt38 | - | 01 Gly tRNA |
2295154 | 2295229 | - | 76 | 57014152 | XFt39 | - | 12 Thr tRNA |
2459885 | 2459962 | + | 78 | 57014152 | XFt40 | - | 11 Arg tRNA |
2524115 | 2524190 | - | 76 | 57014152 | XFt41 | - | 20 Trp tRNA |
2525541 | 2525616 | - | 76 | 57014152 | XFt42 | - | 12 Thr tRNA |
2525659 | 2525732 | - | 74 | 57014152 | XFt43 | - | 01 Gly tRNA |
2525766 | 2525851 | - | 86 | 57014152 | XFt44 | - | 18 Tyr tRNA |
2529603 | 2529679 | - | 77 | 57014152 | XFt45 | - | 05 Gln tRNA |
2602997 | 2603351 | + | 355 | 57014152 | XFs01 | - | tmRNA |
2652606 | 2652682 | + | 77 | 57014152 | XFt46 | - | 03 Pro tRNA |
2652744 | 2652822 | + | 79 | 57014152 | XFt47 | - | 11 Arg tRNA |
2652862 | 2652938 | + | 77 | 57014152 | XFt48 | - | 09 His tRNA |
2653049 | 2653124 | + | 76 | 57014152 | XFt49 | - | 10 Lys tRNA |