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Геном прокариот/Материалы:NC 007354

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   LOCUS       NC_007354            1315030 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Ehrlichia canis str. Jake, complete genome.
   ACCESSION   NC_007354
   VERSION     NC_007354.1  GI:73666633
   KEYWORDS    .
   SOURCE      Ehrlichia canis str. Jake
     ORGANISM  Ehrlichia canis str. Jake
               Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
               Anaplasmataceae; Ehrlichia.
   REFERENCE   1  (bases 1 to 1315030)
     AUTHORS   Mavromatis,K., Doyle,C.K., Lykidis,A., Ivanova,N., Francino,M.P.,
               Chain,P., Shin,M., Malfatti,S., Larimer,F., Copeland,A.,
               Detter,J.C., Land,M., Richardson,P.M., Yu,X.J., Walker,D.H.,
               McBride,J.W. and Kyrpides,N.C.
     TITLE     The genome of the obligately intracellular bacterium Ehrlichia
               canis reveals themes of complex membrane structure and immune
               evasion strategies
     JOURNAL   J. Bacteriol. 188 (11), 4015-4023 (2006)
      PUBMED   16707693
   REFERENCE   2  (bases 1 to 1315030)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1315030)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Mavrommatis,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000107.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available fro Jere McBride
               (jemcbrid@utmb.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
338 415 + 78 73666633 Ecaj_R0001 - 11 Arg tRNA
2234 2308 - 75 73666633 Ecaj_R0002 - 05 Gln tRNA
27185 27275 - 91 73666633 Ecaj_R0003 - 15 Leu tRNA
47712 47785 + 74 73666633 Ecaj_R0004 - 13 Val tRNA
69588 69660 + 73 73666633 Ecaj_R0005 - 10 Lys tRNA
75718 75792 - 75 73666633 Ecaj_R0006 - 19 Cys tRNA
156010 156093 - 84 73666633 Ecaj_R0007 - 15 Leu tRNA
167065 167143 + 79 73666633 Ecaj_R0008 - 03 Pro tRNA
167568 167655 - 88 73666633 Ecaj_R0009 - 08 Ser tRNA
190571 190643 + 73 73666633 Ecaj_R0010 - 02 Ala tRNA
245349 245425 + 77 73666633 Ecaj_R0011 - 20 Trp tRNA
259386 259459 + 74 73666633 Ecaj_R0012 - 11 Arg tRNA
285955 287439 + 1485 73666633 Ecaj_R0013 - 16S ribosomal RNA
292601 292687 + 87 73666633 Ecaj_R0014 - 15 Leu tRNA
300143 300215 + 73 73666633 Ecaj_R0015 - 10 Lys tRNA
300396 300479 + 84 73666633 Ecaj_R0016 - 15 Leu tRNA
307599 307673 + 75 73666633 Ecaj_R0017 - 16 Met tRNA
360915 360990 + 76 73666633 Ecaj_R0018 - 01 Gly tRNA
412218 412291 + 74 73666633 Ecaj_R0019 - 06 Asp tRNA
488998 489297 - 300 73666633 Ecaj_R0020 - tmRNA
489431 489503 - 73 73666633 Ecaj_R0021 - 07 Asn tRNA
494191 494263 - 73 73666633 Ecaj_R0022 - 17 Phe tRNA
503811 503887 - 77 73666633 Ecaj_R0023 - 11 Arg tRNA
548477 548551 + 75 73666633 Ecaj_R0024 - 16 Met tRNA
557852 557927 + 76 73666633 Ecaj_R0025 - 16 Met tRNA
571075 571165 + 91 73666633 Ecaj_R0026 - 08 Ser tRNA
592048 592120 + 73 73666633 Ecaj_R0027 - 12 Thr tRNA
640728 640798 - 71 73666633 Ecaj_R0028 - 12 Thr tRNA
668794 668877 + 84 73666633 Ecaj_R0029 - 15 Leu tRNA
710743 710819 - 77 73666633 Ecaj_R0030 - 14 Ile tRNA
727749 727825 - 77 73666633 Ecaj_R0031 - 03 Pro tRNA
784352 784424 - 73 73666633 Ecaj_R0032 - 11 Arg tRNA
825376 825448 - 73 73666633 Ecaj_R0033 - 04 Glu tRNA
865093 865163 - 71 73666633 Ecaj_R0034 - 01 Gly tRNA
865171 865253 - 83 73666633 Ecaj_R0035 - 18 Tyr tRNA
922361 922647 + 287 73666633 Ecaj_R0036 - RNA component of RNaseP
958691 958763 - 73 73666633 Ecaj_R0037 - 13 Val tRNA
1098799 1098918 - 120 73666633 Ecaj_R0038 - 5S ribosomal RNA
1098983 1101781 - 2799 73666633 Ecaj_R0039 - 23S ribosomal RNA
1115358 1115430 - 73 73666633 Ecaj_R0040 - 09 His tRNA
1233731 1233821 + 91 73666633 Ecaj_R0041 - 08 Ser tRNA
1309522 1309613 + 92 73666633 Ecaj_R0042 - SRP RNA; RNA component of signal recognition particle