Перейти к содержанию

Геном прокариот/Материалы:NC 007510

Материал из Викиверситета
Базовый уровень статей

Выделить только проверенную информацию

Создать черновик

   LOCUS       NC_007510            3694126 bp    DNA     circular BCT 18-JAN-2006
   DEFINITION  Burkholderia sp. 383 chromosome 1, complete sequence.
   ACCESSION   NC_007510
   VERSION     NC_007510.1  GI:78064658
   KEYWORDS    .
   SOURCE      Burkholderia sp. 383
     ORGANISM  Burkholderia sp. 383
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3694126)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Burkholderia sp. 383
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3694126)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3694126)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000151.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Jim Tiedje
               (tiedjej@pilot.msu.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК

[править]
Начало Конец Направление Длина PID Ген COG Комментарий
22552 22664 - 113 78064658 Bcep18194_AR0009 - 5S ribosomal RNA
22796 25677 - 2882 78064658 Bcep18194_AR0010 - 23S ribosomal RNA
26071 27550 - 1480 78064658 Bcep18194_AR0011 - 16S ribosomal RNA
34991 35064 + 74 78064658 Bcep18194_AR0012 - 13 Val tRNA
180109 180181 + 73 78064658 Bcep18194_AR0013 - 11 Arg tRNA
252761 252833 + 73 78064658 Bcep18194_AR0014 - 02 Ala tRNA
293394 294873 + 1480 78064658 Bcep18194_AR0015 - 16S ribosomal RNA
294937 295010 + 74 78064658 Bcep18194_AR0016 - 14 Ile tRNA
295055 295127 + 73 78064658 Bcep18194_AR0017 - 02 Ala tRNA
295424 298305 + 2882 78064658 Bcep18194_AR0018 - 23S ribosomal RNA
298437 298549 + 113 78064658 Bcep18194_AR0019 - 5S ribosomal RNA
300859 300941 + 83 78064658 Bcep18194_AR0020 - 18 Tyr tRNA
300989 301059 + 71 78064658 Bcep18194_AR0021 - 01 Gly tRNA
301087 301158 + 72 78064658 Bcep18194_AR0022 - 12 Thr tRNA
302478 302550 + 73 78064658 Bcep18194_AR0023 - 20 Trp tRNA
405712 405784 + 73 78064658 Bcep18194_AR0024 - 12 Thr tRNA
507418 508897 + 1480 78064658 Bcep18194_AR0025 - 16S ribosomal RNA
508960 509033 + 74 78064658 Bcep18194_AR0026 - 14 Ile tRNA
509078 509150 + 73 78064658 Bcep18194_AR0027 - 02 Ala tRNA
509441 512322 + 2882 78064658 Bcep18194_AR0028 - 23S ribosomal RNA
512454 512566 + 113 78064658 Bcep18194_AR0029 - 5S ribosomal RNA
551819 551892 - 74 78064658 Bcep18194_AR0030 - 03 Pro tRNA
659636 659982 + 347 78064658 Bcep18194_AR0031 - RNA component of RNaseP
804185 804258 - 74 78064658 Bcep18194_AR0032 - 10 Lys tRNA
947456 947527 - 72 78064658 Bcep18194_AR0033 - 01 Gly tRNA
1012109 1012196 + 88 78064658 Bcep18194_AR0034 - 08 Ser tRNA
1031995 1032079 - 85 78064658 Bcep18194_AR0035 - 08 Ser tRNA
1039408 1039481 - 74 78064658 Bcep18194_AR0036 - 11 Arg tRNA
1039545 1039618 - 74 78064658 Bcep18194_AR0037 - 11 Arg tRNA
1039689 1039762 - 74 78064658 Bcep18194_AR0038 - 11 Arg tRNA
1053831 1053903 - 73 78064658 Bcep18194_AR0039 - 12 Thr tRNA
1083647 1084016 + 370 78064658 Bcep18194_AR0040 - tmRNA
1146373 1146445 - 73 78064658 Bcep18194_AR0041 - 07 Asn tRNA
1146524 1146596 - 73 78064658 Bcep18194_AR0042 - 07 Asn tRNA
1192554 1192626 + 73 78064658 Bcep18194_AR0043 - 01 Gly tRNA
1192683 1192755 + 73 78064658 Bcep18194_AR0044 - 01 Gly tRNA
1192810 1192882 + 73 78064658 Bcep18194_AR0045 - 01 Gly tRNA
1192986 1193056 + 71 78064658 Bcep18194_AR0046 - 19 Cys tRNA
1413852 1413925 - 74 78064658 Bcep18194_AR0047 - 03 Pro tRNA
1423235 1423308 + 74 78064658 Bcep18194_AR0048 - 11 Arg tRNA
1597046 1597119 + 74 78064658 Bcep18194_AR0049 - 13 Val tRNA
1609994 1610067 + 74 78064658 Bcep18194_AR0050 - 03 Pro tRNA
1678842 1678925 - 84 78064658 Bcep18194_AR0051 - 15 Leu tRNA
1679340 1679423 - 84 78064658 Bcep18194_AR0052 - 15 Leu tRNA
1683057 1683140 - 84 78064658 Bcep18194_AR0053 - 15 Leu tRNA
1695868 1695941 - 74 78064658 Bcep18194_AR0054 - 16 Met tRNA
1704086 1704158 + 73 78064658 Bcep18194_AR0055 - 09 His tRNA
2173126 2173228 - 103 78064658 Bcep18194_AR0056 - SRP RNA; RNA component of signal recognition particle
2275220 2275293 - 74 78064658 Bcep18194_AR0057 - 06 Asp tRNA
2275320 2275392 - 73 78064658 Bcep18194_AR0058 - 13 Val tRNA
2298099 2298182 - 84 78064658 Bcep18194_AR0059 - 15 Leu tRNA
2425170 2425243 - 74 78064658 Bcep18194_AR0060 - 06 Asp tRNA
2425320 2425392 - 73 78064658 Bcep18194_AR0061 - 04 Glu tRNA
2425462 2425535 - 74 78064658 Bcep18194_AR0062 - 06 Asp tRNA
2425617 2425689 - 73 78064658 Bcep18194_AR0063 - 04 Glu tRNA
2425756 2425829 - 74 78064658 Bcep18194_AR0064 - 06 Asp tRNA
2425912 2425984 - 73 78064658 Bcep18194_AR0065 - 04 Glu tRNA
2426126 2426198 - 73 78064658 Bcep18194_AR0066 - 02 Ala tRNA
2445364 2445454 - 91 78064658 Bcep18194_AR0067 - 08 Ser tRNA
2531133 2531206 - 74 78064658 Bcep18194_AR0068 - 16 Met tRNA
2555270 2555341 + 72 78064658 Bcep18194_AR0069 - 13 Val tRNA
2609652 2609739 + 88 78064658 Bcep18194_AR0070 - 08 Ser tRNA
2638876 2638988 - 113 78064658 Bcep18194_AR0071 - 5S ribosomal RNA
2639120 2642001 - 2882 78064658 Bcep18194_AR0072 - 23S ribosomal RNA
2642298 2642370 - 73 78064658 Bcep18194_AR0073 - 02 Ala tRNA
2642415 2642488 - 74 78064658 Bcep18194_AR0074 - 14 Ile tRNA
2642551 2644030 - 1480 78064658 Bcep18194_AR0075 - 16S ribosomal RNA
2675201 2675282 - 82 78064658 Bcep18194_AR0076 - 15 Leu tRNA
2812939 2813010 + 72 78064658 Bcep18194_AR0077 - 11 Arg tRNA
2818441 2818514 + 74 78064658 Bcep18194_AR0078 - 16 Met tRNA
2923510 2923591 + 82 78064658 Bcep18194_AR0079 - 15 Leu tRNA
3114495 3114568 + 74 78064658 Bcep18194_AR0080 - 16 Met tRNA
3276156 3276229 + 74 78064658 Bcep18194_AR0081 - 05 Gln tRNA
3638037 3638109 - 73 78064658 Bcep18194_AR0082 - 17 Phe tRNA
3655607 3655679 + 73 78064658 Bcep18194_AR0083 - 10 Lys tRNA