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Геном прокариот/Материалы:NC 007519

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   LOCUS       NC_007519            3730232 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Desulfovibrio desulfuricans G20, complete genome.
   ACCESSION   NC_007519
   VERSION     NC_007519.1  GI:78355047
   KEYWORDS    .
   SOURCE      Desulfovibrio desulfuricans G20
     ORGANISM  Desulfovibrio desulfuricans G20
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3730232)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Desulfovibrio desulfuricans G20
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3730232)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3730232)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A.,
               Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (01-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000112.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Judy Wall
               (wallj@missouri.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
69874 71392 + 1519 78355047 Dde_R0001 - 16S ribosomal RNA
71460 71536 + 77 78355047 Dde_R0002 - 14 Ile tRNA
71551 71626 + 76 78355047 Dde_R0003 - 02 Ala tRNA
71835 74651 + 2817 78355047 Dde_R0004 - 23S ribosomal RNA
74916 74979 + 64 78355047 Dde_R0005 - 5S ribosomal RNA
137031 137107 - 77 78355047 Dde_R0006 - 11 Arg tRNA
179761 179836 - 76 78355047 Dde_R0007 - 10 Lys tRNA
560298 560373 - 76 78355047 Dde_R0008 - 09 His tRNA
640645 640722 - 78 78355047 Dde_R0009 - 04 Glu tRNA
640737 640811 - 75 78355047 Dde_R0010 - 05 Gln tRNA
677828 677903 + 76 78355047 Dde_R0011 - 13 Val tRNA
703376 703453 + 78 78355047 Dde_R0012 - 04 Glu tRNA
903897 903983 - 87 78355047 Dde_R0013 - 15 Leu tRNA
917593 917678 - 86 78355047 Dde_R0014 - 15 Leu tRNA
1028167 1028258 - 92 78355047 Dde_R0015 - 08 Ser tRNA
1028399 1028487 - 89 78355047 Dde_R0016 - SRP RNA; RNA component of signal recognition particle
1028529 1028620 - 92 78355047 Dde_R0017 - 08 Ser tRNA
1109628 1109721 - 94 78355047 Dde_R0018 - 08 Ser tRNA
1248668 1248743 + 76 78355047 Dde_R0019 - 12 Thr tRNA
1309461 1310964 + 1504 78355047 Dde_R0020 - 16S ribosomal RNA
1311051 1311127 + 77 78355047 Dde_R0021 - 14 Ile tRNA
1311142 1311217 + 76 78355047 Dde_R0022 - 02 Ala tRNA
1311426 1314241 + 2816 78355047 Dde_R0023 - 23S ribosomal RNA
1314473 1314586 + 114 78355047 Dde_R0024 - 5S ribosomal RNA
1319605 1319680 - 76 78355047 Dde_R0025 - 10 Lys tRNA
1321766 1321841 + 76 78355047 Dde_R0026 - 10 Lys tRNA
1382523 1382598 - 76 78355047 Dde_R0027 - 07 Asn tRNA
1383134 1383209 - 76 78355047 Dde_R0028 - 07 Asn tRNA
1531715 1531804 - 90 78355047 Dde_R0029 - Sec tRNA
1594575 1594652 - 78 78355047 Dde_R0030 - 03 Pro tRNA
1626556 1626632 + 77 78355047 Dde_R0031 - 16 Met tRNA
1722132 1722208 - 77 78355047 Dde_R0032 - 03 Pro tRNA
1785177 1785480 - 304 78355047 Dde_R0033 - RNA component of RNaseP
1787650 1787745 + 96 78355047 Dde_R0034 - 08 Ser tRNA
1840105 1840181 - 77 78355047 Dde_R0035 - 11 Arg tRNA
1840209 1840285 - 77 78355047 Dde_R0036 - 11 Arg tRNA
1840308 1840384 - 77 78355047 Dde_R0037 - 11 Arg tRNA
1988131 1988490 - 360 78355047 Dde_R0038 - tmRNA
1997002 1997078 - 77 78355047 Dde_R0039 - 16 Met tRNA
1997218 1997294 - 77 78355047 Dde_R0040 - 16 Met tRNA
2031899 2031984 - 86 78355047 Dde_R0041 - 15 Leu tRNA
2047102 2047178 + 77 78355047 Dde_R0042 - 11 Arg tRNA
2175143 2175218 + 76 78355047 Dde_R0043 - 05 Gln tRNA
2197430 2197505 + 76 78355047 Dde_R0044 - 16 Met tRNA
2265062 2265146 - 85 78355047 Dde_R0045 - 15 Leu tRNA
2365963 2366037 + 75 78355047 Dde_R0046 - 01 Gly tRNA
2366060 2366134 + 75 78355047 Dde_R0047 - 19 Cys tRNA
2366142 2366216 + 75 78355047 Dde_R0048 - 01 Gly tRNA
2366288 2366363 + 76 78355047 Dde_R0049 - 01 Gly tRNA
2366407 2366481 + 75 78355047 Dde_R0050 - 01 Gly tRNA
2509400 2509486 + 87 78355047 Dde_R0051 - 15 Leu tRNA
2604046 2604159 - 114 78355047 Dde_R0052 - 5S ribosomal RNA
2604393 2607206 - 2814 78355047 Dde_R0053 - 23S ribosomal RNA
2607415 2607490 - 76 78355047 Dde_R0054 - 02 Ala tRNA
2607505 2607581 - 77 78355047 Dde_R0055 - 14 Ile tRNA
2607679 2609167 - 1489 78355047 Dde_R0056 - 16S ribosomal RNA
2657235 2657309 - 75 78355047 Dde_R0057 - 13 Val tRNA
2908395 2908486 - 92 78355047 Dde_R0058 - 08 Ser tRNA
2969133 2969208 + 76 78355047 Dde_R0059 - 12 Thr tRNA
2969214 2969299 + 86 78355047 Dde_R0060 - 18 Tyr tRNA
2969352 2969428 + 77 78355047 Dde_R0061 - 01 Gly tRNA
2969465 2969540 + 76 78355047 Dde_R0062 - 12 Thr tRNA
2970953 2971029 + 77 78355047 Dde_R0063 - 20 Trp tRNA
3012121 3012197 - 77 78355047 Dde_R0064 - 06 Asp tRNA
3012203 3012278 - 76 78355047 Dde_R0065 - 13 Val tRNA
3025302 3025378 - 77 78355047 Dde_R0066 - 06 Asp tRNA
3048400 3048476 - 77 78355047 Dde_R0067 - 11 Arg tRNA
3128059 3128136 + 78 78355047 Dde_R0068 - 04 Glu tRNA
3247201 3247277 + 77 78355047 Dde_R0069 - 03 Pro tRNA
3247482 3247557 + 76 78355047 Dde_R0070 - 12 Thr tRNA
3405199 3405274 - 76 78355047 Dde_R0071 - 02 Ala tRNA
3465584 3465670 + 87 78355047 Dde_R0072 - 15 Leu tRNA
3514674 3514749 + 76 78355047 Dde_R0073 - 17 Phe tRNA
3531911 3531997 - 87 78355047 Dde_R0074 - 15 Leu tRNA
3533634 3533731 - 98 78355047 Dde_R0075 - 5S ribosomal RNA
3533981 3536778 - 2798 78355047 Dde_R0076 - 23S ribosomal RNA
3536987 3537062 - 76 78355047 Dde_R0077 - 02 Ala tRNA
3537077 3537153 - 77 78355047 Dde_R0078 - 14 Ile tRNA
3537239 3538739 - 1501 78355047 Dde_R0079 - 16S ribosomal RNA
3575981 3576057 - 77 78355047 Dde_R0080 - 16 Met tRNA
3713040 3713115 - 76 78355047 Dde_R0081 - 02 Ala tRNA