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Геном прокариот/Материалы:NC 007643

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   LOCUS       NC_007643            4352825 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Rhodospirillum rubrum ATCC 11170, complete genome.
   ACCESSION   NC_007643
   VERSION     NC_007643.1  GI:83591340
   KEYWORDS    .
   SOURCE      Rhodospirillum rubrum ATCC 11170
     ORGANISM  Rhodospirillum rubrum ATCC 11170
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
               Rhodospirillaceae; Rhodospirillum.
   REFERENCE   1  (bases 1 to 4352825)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P.,
               Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C.
     TITLE     Complete sequence of the chromosome of Rhodospirillum rubrum ATCC
               11170
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4352825)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4352825)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (08-DEC-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000230.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Gary Roberts (groberts@bact.wisc.edu)
               Bacteria available from ATCC: ATCC 11170
               Contacts: Gary Roberts (groberts@bact.wisc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
17016 17102 - 87 83591340 Rru_AR0001 - 15 Leu tRNA
117325 117401 - 77 83591340 Rru_AR0002 - 11 Arg tRNA
151241 151317 + 77 83591340 Rru_AR0003 - 11 Arg tRNA
192528 194004 + 1477 83591340 Rru_AR0004 - 16S ribosomal RNA
194189 194265 + 77 83591340 Rru_AR0005 - 14 Ile tRNA
194332 194407 + 76 83591340 Rru_AR0006 - 02 Ala tRNA
194770 197527 + 2758 83591340 Rru_AR0007 - 23S ribosomal RNA
197647 197761 + 115 83591340 Rru_AR0008 - 5S ribosomal RNA
197858 197934 + 77 83591340 Rru_AR0009 - 16 Met tRNA
306906 306979 + 74 83591340 Rru_AR0010 - 05 Gln tRNA
324100 324174 - 75 83591340 Rru_AR0011 - 05 Gln tRNA
363106 363181 + 76 83591340 Rru_AR0012 - 02 Ala tRNA
363384 363459 + 76 83591340 Rru_AR0013 - 02 Ala tRNA
407699 407790 + 92 83591340 Rru_AR0014 - 08 Ser tRNA
468041 468126 - 86 83591340 Rru_AR0015 - 15 Leu tRNA
559697 559772 + 76 83591340 Rru_AR0016 - 10 Lys tRNA
795406 795496 + 91 83591340 Rru_AR0017 - 08 Ser tRNA
911398 912874 + 1477 83591340 Rru_AR0018 - 16S ribosomal RNA
913057 913133 + 77 83591340 Rru_AR0019 - 14 Ile tRNA
913200 913275 + 76 83591340 Rru_AR0020 - 02 Ala tRNA
913637 916394 + 2758 83591340 Rru_AR0021 - 23S ribosomal RNA
916513 916627 + 115 83591340 Rru_AR0022 - 5S ribosomal RNA
916723 916799 + 77 83591340 Rru_AR0023 - 16 Met tRNA
1145454 1145802 - 349 83591340 Rru_AR0024 - RNA component of RNase P
1160163 1160238 + 76 83591340 Rru_AR0025 - 04 Glu tRNA
1465406 1465495 + 90 83591340 Rru_AR0026 - 08 Ser tRNA
1792276 1792351 - 76 83591340 Rru_AR0027 - 04 Glu tRNA
1825837 1825921 + 85 83591340 Rru_AR0028 - 15 Leu tRNA
1833693 1833768 + 76 83591340 Rru_AR0029 - 13 Val tRNA
1934224 1934300 + 77 83591340 Rru_AR0030 - 03 Pro tRNA
1934676 1934752 + 77 83591340 Rru_AR0031 - 11 Arg tRNA
1960034 1960110 + 77 83591340 Rru_AR0032 - 03 Pro tRNA
1998244 1998333 + 90 83591340 Rru_AR0033 - 08 Ser tRNA
2032987 2033062 - 76 83591340 Rru_AR0034 - 10 Lys tRNA
2094273 2094346 + 74 83591340 Rru_AR0035 - 19 Cys tRNA
2094428 2094502 + 75 83591340 Rru_AR0036 - 07 Asn tRNA
2305924 2306010 - 87 83591340 Rru_AR0037 - 15 Leu tRNA
2331595 2331671 + 77 83591340 Rru_AR0038 - 16 Met tRNA
2412007 2412083 - 77 83591340 Rru_AR0039 - 09 His tRNA
2560697 2560938 + 242 83591340 Rru_AR0040 - tmRNA, 10Sa RNA
2731721 2731797 - 77 83591340 Rru_AR0041 - 16 Met tRNA
2731893 2732007 - 115 83591340 Rru_AR0042 - 5S ribosomal RNA
2732127 2734884 - 2758 83591340 Rru_AR0043 - 23S ribosomal RNA
2735247 2735322 - 76 83591340 Rru_AR0044 - 02 Ala tRNA
2735389 2735465 - 77 83591340 Rru_AR0045 - 14 Ile tRNA
2735650 2737126 - 1477 83591340 Rru_AR0046 - 16S ribosomal RNA
2962229 2962303 - 75 83591340 Rru_AR0047 - 13 Val tRNA
3125185 3125260 - 76 83591340 Rru_AR0048 - 20 Trp tRNA
3126888 3126961 - 74 83591340 Rru_AR0049 - 01 Gly tRNA
3126989 3127074 - 86 83591340 Rru_AR0050 - 18 Tyr tRNA
3128216 3128291 + 76 83591340 Rru_AR0051 - 12 Thr tRNA
3194938 3195013 - 76 83591340 Rru_AR0052 - 17 Phe tRNA
3322206 3322281 - 76 83591340 Rru_AR0053 - 16 Met tRNA
3378255 3378329 + 75 83591340 Rru_AR0054 - 12 Thr tRNA
3378495 3378569 + 75 83591340 Rru_AR0055 - 12 Thr tRNA
3379605 3379681 + 77 83591340 Rru_AR0056 - 06 Asp tRNA
3399757 3399833 - 77 83591340 Rru_AR0057 - 03 Pro tRNA
3491233 3491307 + 75 83591340 Rru_AR0058 - 13 Val tRNA
3719917 3719990 - 74 83591340 Rru_AR0059 - 01 Gly tRNA
3806944 3807058 - 115 83591340 Rru_AR0060 - 5S ribosomal RNA
3807175 3809932 - 2758 83591340 Rru_AR0061 - 23S ribosomal RNA
3810295 3810370 - 76 83591340 Rru_AR0062 - 02 Ala tRNA
3810437 3810513 - 77 83591340 Rru_AR0063 - 14 Ile tRNA
3810698 3812174 - 1477 83591340 Rru_AR0064 - 16S ribosomal RNA
3825931 3826007 - 77 83591340 Rru_AR0065 - 11 Arg tRNA
3998595 3998694 - 100 83591340 Rru_AR0066 - SRP RNA, 4.5S RNA
4023191 4023277 - 87 83591340 Rru_AR0067 - 15 Leu tRNA
4059305 4059380 + 76 83591340 Rru_AR0068 - 02 Ala tRNA
4108039 4108113 - 75 83591340 Rru_AR0069 - 12 Thr tRNA
4262308 4262382 + 75 83591340 Rru_AR0070 - 01 Gly tRNA