Геном прокариот/Материалы:NC 007644
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Базовый уровень статей |
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LOCUS NC_007644 2628784 bp DNA circular BCT 24-MAY-2007
DEFINITION Moorella thermoacetica ATCC 39073, complete genome.
ACCESSION NC_007644
VERSION NC_007644.1 GI:83588874
KEYWORDS .
SOURCE Moorella thermoacetica ATCC 39073
ORGANISM Moorella thermoacetica ATCC 39073
Bacteria; Firmicutes; Clostridia; Thermoanaerobacteriales;
Thermoanaerobacteriaceae; Moorella group; Moorella.
REFERENCE 1 (bases 1 to 2628784)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chertkov,O.,
Saunders,E.H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Anderson,I.,
Richardson,P. and Ragsdale,S.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Moorella thermoacetica ATCC 39073
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2628784)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2628784)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chertkov,O.,
Saunders,E.H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Anderson,I. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000232.
URL -- http://www.jgi.doe.gov
Source DNA available from Stephen Ragsdale (sragsdale@unl.edu)
Bacteria available from ATCC: ATCC 39073
Contacts: Stephen Ragsdale (sragsdale@unl.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 18512 | 18762 | + | 251 | 83588874 | Moth_R0001 | - | |
| 26136 | 26227 | + | 92 | 83588874 | Moth_R0002 | - | 08 Ser tRNA |
| 26240 | 26335 | + | 96 | 83588874 | Moth_R0003 | - | 08 Ser tRNA |
| 26450 | 26526 | + | 77 | 83588874 | Moth_R0004 | - | 11 Arg tRNA |
| 26539 | 26615 | + | 77 | 83588874 | Moth_R0005 | - | 11 Arg tRNA |
| 27077 | 27168 | + | 92 | 83588874 | Moth_R0006 | - | 08 Ser tRNA |
| 28593 | 28687 | + | 95 | 83588874 | Moth_R0007 | - | 08 Ser tRNA |
| 28823 | 28925 | + | 103 | 83588874 | Moth_R0008 | - | 4.5S RNA, SRP RNA |
| 99445 | 99521 | + | 77 | 83588874 | Moth_R0009 | - | 16 Met tRNA |
| 99530 | 99604 | + | 75 | 83588874 | Moth_R0010 | - | 04 Glu tRNA |
| 134847 | 134950 | - | 104 | 83588874 | Moth_R0011 | - | |
| 147998 | 149552 | + | 1555 | 83588874 | Moth_R0012 | - | 16S ribosomal RNA |
| 149668 | 149744 | + | 77 | 83588874 | Moth_R0013 | - | 14 Ile tRNA |
| 149830 | 149905 | + | 76 | 83588874 | Moth_R0014 | - | 02 Ala tRNA |
| 149966 | 152937 | + | 2972 | 83588874 | Moth_R0015 | - | 23S ribosomal RNA |
| 153004 | 153118 | + | 115 | 83588874 | Moth_R0016 | - | 5S ribosomal RNA |
| 153169 | 153243 | + | 75 | 83588874 | Moth_R0017 | - | 07 Asn tRNA |
| 284252 | 284606 | + | 355 | 83588874 | Moth_R0018 | - | tmRNA, 10Sa RNA |
| 377277 | 377352 | + | 76 | 83588874 | Moth_R0019 | - | 02 Ala tRNA |
| 377364 | 377438 | + | 75 | 83588874 | Moth_R0020 | - | 13 Val tRNA |
| 400987 | 401094 | - | 108 | 83588874 | Moth_R0021 | - | |
| 409831 | 409997 | + | 167 | 83588874 | Moth_R0022 | - | |
| 417084 | 417159 | + | 76 | 83588874 | Moth_R0023 | - | 02 Ala tRNA |
| 459162 | 459289 | + | 128 | 83588874 | Moth_R0024 | - | |
| 540866 | 540939 | + | 74 | 83588874 | Moth_R0025 | - | 01 Gly tRNA |
| 540945 | 541021 | + | 77 | 83588874 | Moth_R0026 | - | 11 Arg tRNA |
| 541034 | 541110 | + | 77 | 83588874 | Moth_R0027 | - | 09 His tRNA |
| 541123 | 541198 | + | 76 | 83588874 | Moth_R0028 | - | 05 Gln tRNA |
| 541206 | 541281 | + | 76 | 83588874 | Moth_R0029 | - | 10 Lys tRNA |
| 541289 | 541373 | + | 85 | 83588874 | Moth_R0030 | - | 15 Leu tRNA |
| 545895 | 545969 | + | 75 | 83588874 | Moth_R0031 | - | 01 Gly tRNA |
| 569533 | 569640 | + | 108 | 83588874 | Moth_R0032 | - | |
| 649555 | 649629 | + | 75 | 83588874 | Moth_R0033 | - | 07 Asn tRNA |
| 649634 | 649708 | + | 75 | 83588874 | Moth_R0034 | - | 16 Met tRNA |
| 651775 | 652137 | + | 363 | 83588874 | Moth_R0035 | - | RNA component of RNaseP |
| 652596 | 652670 | + | 75 | 83588874 | Moth_R0036 | - | |
| 847282 | 847385 | + | 104 | 83588874 | Moth_R0037 | - | |
| 930570 | 930644 | - | 75 | 83588874 | Moth_R0038 | - | 12 Thr tRNA |
| 950178 | 950293 | + | 116 | 83588874 | Moth_R0039 | - | RFN element; FMN riboswitch |
| 996185 | 996342 | - | 158 | 83588874 | Moth_R0040 | - | |
| 1093214 | 1093385 | + | 172 | 83588874 | Moth_R0041 | - | |
| 1116483 | 1116660 | + | 178 | 83588874 | Moth_R0042 | - | |
| 1152499 | 1152574 | - | 76 | 83588874 | Moth_R0043 | - | 04 Glu tRNA |
| 1160077 | 1160150 | + | 74 | 83588874 | Moth_R0044 | - | 05 Gln tRNA |
| 1172671 | 1172746 | + | 76 | 83588874 | Moth_R0045 | - | 20 Trp tRNA |
| 1194764 | 1194839 | - | 76 | 83588874 | Moth_R0046 | - | 10 Lys tRNA |
| 1194845 | 1194921 | - | 77 | 83588874 | Moth_R0047 | - | 11 Arg tRNA |
| 1204832 | 1204935 | - | 104 | 83588874 | Moth_R0048 | - | |
| 1221972 | 1222215 | - | 244 | 83588874 | Moth_R0049 | - | |
| 1250938 | 1251015 | + | 78 | 83588874 | Moth_R0050 | - | 03 Pro tRNA |
| 1251025 | 1251100 | + | 76 | 83588874 | Moth_R0051 | - | 12 Thr tRNA |
| 1265031 | 1265132 | - | 102 | 83588874 | Moth_R0052 | - | |
| 1272647 | 1272748 | - | 102 | 83588874 | Moth_R0053 | - | |
| 1278513 | 1278600 | - | 88 | 83588874 | Moth_R0054 | - | 15 Leu tRNA |
| 1324983 | 1325060 | - | 78 | 83588874 | Moth_R0055 | - | 03 Pro tRNA |
| 1354167 | 1354284 | - | 118 | 83588874 | Moth_R0056 | - | |
| 1390416 | 1390600 | + | 185 | 83588874 | Moth_R0057 | - | |
| 1412184 | 1412323 | + | 140 | 83588874 | Moth_R0058 | - | |
| 1448657 | 1448759 | + | 103 | 83588874 | Moth_R0059 | - | |
| 1696140 | 1696239 | + | 100 | 83588874 | Moth_R0060 | - | |
| 1741459 | 1741649 | + | 191 | 83588874 | Moth_R0061 | - | |
| 1814276 | 1814512 | - | 237 | 83588874 | Moth_R0062 | - | |
| 1816334 | 1816408 | - | 75 | 83588874 | Moth_R0063 | - | 13 Val tRNA |
| 1849506 | 1849580 | + | 75 | 83588874 | Moth_R0064 | - | 01 Gly tRNA |
| 1849593 | 1849668 | + | 76 | 83588874 | Moth_R0065 | - | 19 Cys tRNA |
| 1850397 | 1850485 | + | 89 | 83588874 | Moth_R0066 | - | 15 Leu tRNA |
| 1874189 | 1874264 | - | 76 | 83588874 | Moth_R0067 | - | 17 Phe tRNA |
| 1874270 | 1874346 | - | 77 | 83588874 | Moth_R0068 | - | 06 Asp tRNA |
| 1874352 | 1874426 | - | 75 | 83588874 | Moth_R0069 | - | 13 Val tRNA |
| 1893467 | 1893551 | - | 85 | 83588874 | Moth_R0070 | - | 15 Leu tRNA |
| 1902042 | 1902128 | + | 87 | 83588874 | Moth_R0071 | - | 15 Leu tRNA |
| 1943069 | 1943146 | + | 78 | 83588874 | Moth_R0072 | - | 03 Pro tRNA |
| 2020095 | 2020247 | - | 153 | 83588874 | Moth_R0073 | - | |
| 2020248 | 2020351 | - | 104 | 83588874 | Moth_R0074 | - | |
| 2031807 | 2031907 | - | 101 | 83588874 | Moth_R0075 | - | |
| 2040916 | 2041016 | - | 101 | 83588874 | Moth_R0076 | - | |
| 2070462 | 2070570 | + | 109 | 83588874 | Moth_R0077 | - | |
| 2145827 | 2145928 | - | 102 | 83588874 | Moth_R0078 | - | |
| 2145914 | 2146017 | - | 104 | 83588874 | Moth_R0079 | - | |
| 2197504 | 2197633 | + | 130 | 83588874 | Moth_R0080 | - | |
| 2328508 | 2328581 | + | 74 | 83588874 | Moth_R0081 | - | |
| 2349172 | 2349367 | - | 196 | 83588874 | Moth_R0082 | - | |
| 2419169 | 2419243 | - | 75 | 83588874 | Moth_R0083 | - | 01 Gly tRNA |
| 2419550 | 2419625 | + | 76 | 83588874 | Moth_R0084 | - | 10 Lys tRNA |
| 2419633 | 2419707 | + | 75 | 83588874 | Moth_R0085 | - | 04 Glu tRNA |
| 2419713 | 2419789 | + | 77 | 83588874 | Moth_R0086 | - | 06 Asp tRNA |
| 2533880 | 2534177 | - | 298 | 83588874 | Moth_R0087 | - | |
| 2586313 | 2586388 | - | 76 | 83588874 | Moth_R0088 | - | 12 Thr tRNA |
| 2586390 | 2586465 | - | 76 | 83588874 | Moth_R0089 | - | 16 Met tRNA |
| 2586482 | 2586567 | - | 86 | 83588874 | Moth_R0090 | - | 18 Tyr tRNA |
| 2591948 | 2592205 | - | 258 | 83588874 | Moth_R0091 | - | |
| 2603151 | 2603246 | - | 96 | 83588874 | Moth_R0092 | - | Sec tRNA |