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Геном прокариот/Материалы:NC 007912

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   LOCUS       NC_007912            5057531 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Saccharophagus degradans 2-40, complete genome.
   ACCESSION   NC_007912
   VERSION     NC_007912.1  GI:90019649
   KEYWORDS    .
   SOURCE      Saccharophagus degradans 2-40
     ORGANISM  Saccharophagus degradans 2-40
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Alteromonadaceae; Saccharophagus.
   REFERENCE   1  (bases 1 to 5057531)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Richardson,P. and
               Weiner,R.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Saccharophagus degradans 2-40
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5057531)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5057531)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
               Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000282.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662192
               Source DNA and bacteria available from Ronald Weiner
               (rw19@umail.umd.edu)
               Contacts: Ronald Wiener (rw19@umail.umd.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
231625 231701 - 77 90019649 Sde_R0001 - 11 Arg tRNA
337690 337765 + 76 90019649 Sde_R0002 - 07 Asn tRNA
339669 339741 + 73 90019649 Sde_R0003 - 09 His tRNA
420943 421018 - 76 90019649 Sde_R0004 - 17 Phe tRNA
925996 926072 - 77 90019649 Sde_R0005 - 16 Met tRNA
1090732 1091036 + 305 90019649 Sde_R0006 - RNA component of RNaseP
1183544 1183619 + 76 90019649 Sde_R0007 - 12 Thr tRNA
1183659 1183742 + 84 90019649 Sde_R0008 - 18 Tyr tRNA
1183911 1183984 + 74 90019649 Sde_R0009 - 01 Gly tRNA
1184012 1184087 + 76 90019649 Sde_R0010 - 12 Thr tRNA
1184174 1184249 + 76 90019649 Sde_R0011 - 20 Trp tRNA
1353012 1353098 - 87 90019649 Sde_R0012 - 15 Leu tRNA
1409844 1411338 + 1495 90019649 Sde_R0013 - 16S ribosomal RNA
1414219 1417090 + 2872 90019649 Sde_R0014 - 23S ribosomal RNA
1417439 1417553 + 115 90019649 Sde_R0015 - 5S ribosomal RNA
1504707 1504782 + 76 90019649 Sde_R0016 - 04 Glu tRNA
1504784 1504858 + 75 90019649 Sde_R0017 - 01 Gly tRNA
1511552 1511639 + 88 90019649 Sde_R0018 - 08 Ser tRNA
1692132 1692221 + 90 90019649 Sde_R0019 - 08 Ser tRNA
1692957 1693033 + 77 90019649 Sde_R0020 - 11 Arg tRNA
1729370 1729479 + 110 90019649 Sde_R0021 - SRP RNA; RNA component of signal recognitionparticle
1820547 1820633 - 87 90019649 Sde_R0022 - 15 Leu tRNA
1929232 1929307 + 76 90019649 Sde_R0023 - 02 Ala tRNA
2024147 2024222 - 76 90019649 Sde_R0024 - 07 Asn tRNA
2024337 2024413 - 77 90019649 Sde_R0025 - 13 Val tRNA
2035241 2035317 + 77 90019649 Sde_R0026 - 03 Pro tRNA
2065737 2065821 + 85 90019649 Sde_R0027 - 15 Leu tRNA
2080810 2080897 - 88 90019649 Sde_R0028 - 08 Ser tRNA
2203011 2203086 + 76 90019649 Sde_R0029 - 13 Val tRNA
2203134 2203210 + 77 90019649 Sde_R0030 - 06 Asp tRNA
2367920 2367996 - 77 90019649 Sde_R0031 - 06 Asp tRNA
2368044 2368119 - 76 90019649 Sde_R0032 - 13 Val tRNA
2422138 2422214 + 77 90019649 Sde_R0033 - 03 Pro tRNA
2422299 2422375 + 77 90019649 Sde_R0034 - 11 Arg tRNA
2422402 2422477 + 76 90019649 Sde_R0035 - 09 His tRNA
2631692 2631778 - 87 90019649 Sde_R0036 - 15 Leu tRNA
2631844 2631917 - 74 90019649 Sde_R0037 - 19 Cys tRNA
2823562 2823638 + 77 90019649 Sde_R0038 - 11 Arg tRNA
3198142 3198217 - 76 90019649 Sde_R0039 - 10 Lys tRNA
3198423 3198498 - 76 90019649 Sde_R0040 - 10 Lys tRNA
3209322 3209436 - 115 90019649 Sde_R0041 - 5S ribosomal RNA
3209807 3212678 - 2872 90019649 Sde_R0042 - 23S ribosomal RNA
3213358 3214891 - 1534 90019649 Sde_R0043 - 16S ribosomal RNA
3213372 3213447 - 76 90019649 Sde_R0044 - 02 Ala tRNA
3213458 3213534 - 77 90019649 Sde_R0045 - 14 Ile tRNA
3439809 3439885 - 77 90019649 Sde_R0046 - 16 Met tRNA
3443994 3444078 - 85 90019649 Sde_R0047 - 15 Leu tRNA
3471683 3472071 + 389 90019649 Sde_R0048 - tmRNA
4154930 4155004 + 75 90019649 Sde_R0049 - 05 Gln tRNA
4158804 4158880 + 77 90019649 Sde_R0050 - 16 Met tRNA