Геном прокариот/Материалы:NC 007925
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Базовый уровень статей |
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LOCUS NC_007925 5513844 bp DNA circular BCT 30-MAR-2006
DEFINITION Rhodopseudomonas palustris BisB18, complete genome.
ACCESSION NC_007925
VERSION NC_007925.1 GI:90421528
KEYWORDS .
SOURCE Rhodopseudomonas palustris BisB18
ORGANISM Rhodopseudomonas palustris BisB18
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 5513844)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB18
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5513844)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5513844)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000301.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000203
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 58307 | 58382 | + | 76 | 90421528 | RPC_R0001 | - | 12 Thr tRNA |
| 65297 | 65372 | - | 76 | 90421528 | RPC_R0002 | - | 02 Ala tRNA |
| 96430 | 96643 | - | 214 | 90421528 | RPC_R0072 | - | Cobalamin riboswitch |
| 168656 | 168745 | - | 90 | 90421528 | RPC_R0003 | - | 08 Ser tRNA |
| 281606 | 281680 | - | 75 | 90421528 | RPC_R0004 | - | 01 Gly tRNA |
| 435624 | 435699 | + | 76 | 90421528 | RPC_R0005 | - | 02 Ala tRNA |
| 471000 | 471086 | - | 87 | 90421528 | RPC_R0007 | - | 15 Leu tRNA |
| 604164 | 604240 | + | 77 | 90421528 | RPC_R0008 | - | 11 Arg tRNA |
| 659625 | 659699 | + | 75 | 90421528 | RPC_R0009 | - | 04 Glu tRNA |
| 676742 | 676826 | + | 85 | 90421528 | RPC_R0010 | - | 15 Leu tRNA |
| 867054 | 867128 | + | 75 | 90421528 | RPC_R0013 | - | 13 Val tRNA |
| 904030 | 904106 | + | 77 | 90421528 | RPC_R0014 | - | 11 Arg tRNA |
| 1082975 | 1083051 | + | 77 | 90421528 | RPC_R0015 | - | 16 Met tRNA |
| 1260373 | 1260447 | + | 75 | 90421528 | RPC_R0016 | - | 05 Gln tRNA |
| 1384247 | 1384427 | - | 181 | 90421528 | RPC_R0055 | - | Cobalamin riboswitch |
| 1456591 | 1458079 | + | 1489 | 90421528 | RPC_R0018 | - | 16S ribosomal RNA |
| 1458308 | 1458384 | + | 77 | 90421528 | RPC_R0019 | - | 14 Ile tRNA |
| 1458527 | 1458602 | + | 76 | 90421528 | RPC_R0020 | - | 02 Ala tRNA |
| 1459096 | 1461942 | + | 2847 | 90421528 | RPC_R0021 | - | 23S ribosomal RNA |
| 1462100 | 1462214 | + | 115 | 90421528 | RPC_R0022 | - | 5S ribosomal RNA |
| 1685576 | 1685651 | - | 76 | 90421528 | RPC_R0027 | - | Xaa tRNA |
| 1703869 | 1703961 | - | 93 | 90421528 | RPC_R0050 | - | |
| 1703962 | 1704052 | - | 91 | 90421528 | RPC_R0049 | - | |
| 2063445 | 2063662 | - | 218 | 90421528 | RPC_R0043 | - | Cobalamin riboswitch |
| 2130252 | 2130464 | + | 213 | 90421528 | RPC_R0041 | - | Cobalamin riboswitch |
| 2380426 | 2380791 | - | 366 | 90421528 | RPC_R0028 | - | RNA component of RNaseP |
| 2593815 | 2593899 | + | 85 | 90421528 | RPC_R0029 | - | 15 Leu tRNA |
| 2600901 | 2600975 | - | 75 | 90421528 | RPC_R0030 | - | 13 Val tRNA |
| 2603261 | 2603337 | + | 77 | 90421528 | RPC_R0031 | - | 06 Asp tRNA |
| 2750128 | 2750204 | - | 77 | 90421528 | RPC_R0032 | - | 11 Arg tRNA |
| 2783459 | 2783532 | + | 74 | 90421528 | RPC_R0033 | - | 19 Cys tRNA |
| 2785284 | 2785358 | - | 75 | 90421528 | RPC_R0034 | - | 07 Asn tRNA |
| 2825526 | 2825601 | - | 76 | 90421528 | RPC_R0035 | - | 10 Lys tRNA |
| 2907932 | 2908009 | + | 78 | 90421528 | RPC_R0036 | - | 03 Pro tRNA |
| 3029645 | 3029721 | - | 77 | 90421528 | RPC_R0037 | - | 03 Pro tRNA |
| 3035737 | 3035811 | + | 75 | 90421528 | RPC_R0038 | - | 04 Glu tRNA |
| 3147536 | 3147629 | + | 94 | 90421528 | RPC_R0039 | - | 08 Ser tRNA |
| 3213093 | 3213182 | - | 90 | 90421528 | RPC_R0040 | - | 08 Ser tRNA |
| 3445449 | 3445523 | + | 75 | 90421528 | RPC_R0042 | - | 12 Thr tRNA |
| 3494523 | 3494609 | - | 87 | 90421528 | RPC_R0044 | - | 15 Leu tRNA |
| 3576705 | 3576780 | - | 76 | 90421528 | RPC_R0045 | - | 10 Lys tRNA |
| 3618261 | 3618577 | + | 317 | 90421528 | RPC_R0046 | - | tmRNA |
| 3703029 | 3703113 | - | 85 | 90421528 | RPC_R0047 | - | 15 Leu tRNA |
| 3716844 | 3716920 | + | 77 | 90421528 | RPC_R0048 | - | 11 Arg tRNA |
| 3857770 | 3857845 | - | 76 | 90421528 | RPC_R0051 | - | 20 Trp tRNA |
| 3897187 | 3897402 | - | 216 | 90421528 | RPC_R0026 | - | Cobalamin riboswitch |
| 3900119 | 3900330 | - | 212 | 90421528 | RPC_R0025 | - | |
| 3909716 | 3909916 | - | 201 | 90421528 | RPC_R0024 | - | Cobalamin riboswitch |
| 3914312 | 3914520 | - | 209 | 90421528 | RPC_R0023 | - | Cobalamin riboswitch |
| 4028116 | 4028189 | - | 74 | 90421528 | RPC_R0052 | - | 01 Gly tRNA |
| 4049052 | 4049137 | - | 86 | 90421528 | RPC_R0053 | - | 18 Tyr tRNA |
| 4061623 | 4061696 | + | 74 | 90421528 | RPC_R0054 | - | 05 Gln tRNA |
| 4173288 | 4173480 | - | 193 | 90421528 | RPC_R0017 | - | Cobalamin riboswitch |
| 4214610 | 4214686 | - | 77 | 90421528 | RPC_R0056 | - | 16 Met tRNA |
| 4264213 | 4264287 | + | 75 | 90421528 | RPC_R0057 | - | Xaa tRNA |
| 4388267 | 4388343 | - | 77 | 90421528 | RPC_R0058 | - | 09 His tRNA |
| 4697667 | 4697742 | - | 76 | 90421528 | RPC_R0059 | - | 16 Met tRNA |
| 4734382 | 4734456 | + | 75 | 90421528 | RPC_R0060 | - | 13 Val tRNA |
| 4737279 | 4737476 | + | 198 | 90421528 | RPC_R0012 | - | Cobalamin riboswitch |
| 4742447 | 4742649 | - | 203 | 90421528 | RPC_R0011 | - | Cobalamin riboswitch |
| 4762170 | 4762284 | - | 115 | 90421528 | RPC_R0061 | - | 5S ribosomal RNA |
| 4762442 | 4765288 | - | 2847 | 90421528 | RPC_R0062 | - | 23S ribosomal RNA |
| 4765838 | 4765913 | - | 76 | 90421528 | RPC_R0063 | - | 02 Ala tRNA |
| 4766079 | 4766155 | - | 77 | 90421528 | RPC_R0064 | - | 14 Ile tRNA |
| 4766378 | 4767866 | - | 1489 | 90421528 | RPC_R0065 | - | 16S ribosomal RNA |
| 4806829 | 4806905 | + | 77 | 90421528 | RPC_R0066 | - | 03 Pro tRNA |
| 4920824 | 4920899 | - | 76 | 90421528 | RPC_R0067 | - | 17 Phe tRNA |
| 4930951 | 4931025 | + | 75 | 90421528 | RPC_R0068 | - | 12 Thr tRNA |
| 5047693 | 5047782 | - | 90 | 90421528 | RPC_R0069 | - | 08 Ser tRNA |
| 5067660 | 5067771 | - | 112 | 90421528 | RPC_R0006 | - | |
| 5178054 | 5178130 | + | 77 | 90421528 | RPC_R0070 | - | 11 Arg tRNA |
| 5410499 | 5410603 | - | 105 | 90421528 | RPC_R0071 | - | SRP RNA; RNA component of signal recognition particle |
| 5467574 | 5467647 | - | 74 | 90421528 | RPC_R0073 | - | 01 Gly tRNA |