Геном прокариот/Материалы:NC 007925

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007925            5513844 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Rhodopseudomonas palustris BisB18, complete genome.
   ACCESSION   NC_007925
   VERSION     NC_007925.1  GI:90421528
   KEYWORDS    .
   SOURCE      Rhodopseudomonas palustris BisB18
     ORGANISM  Rhodopseudomonas palustris BisB18
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 5513844)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I.,
               Oda,Y., Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rhodopseudomonas palustris BisB18
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5513844)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-MAR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5513844)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I.,
               Oda,Y., Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000301.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000203
               Source DNA and bacteria available from Caroline S. Harwood
               (csh5@u.washington.edu)
               Contacts: Caroline S. Harwood (csh5@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
58307	58382	+	76	90421528	RPC_R0001	-	^{12 Thr tRNA}
65297	65372	-	76	90421528	RPC_R0002	-	^{02 Ala tRNA}
96430	96643	-	214	90421528	RPC_R0072	-	Cobalamin riboswitch
168656	168745	-	90	90421528	RPC_R0003	-	^{08 Ser tRNA}
281606	281680	-	75	90421528	RPC_R0004	-	^{01 Gly tRNA}
435624	435699	+	76	90421528	RPC_R0005	-	^{02 Ala tRNA}
471000	471086	-	87	90421528	RPC_R0007	-	^{15 Leu tRNA}
604164	604240	+	77	90421528	RPC_R0008	-	^{11 Arg tRNA}
659625	659699	+	75	90421528	RPC_R0009	-	^{04 Glu tRNA}
676742	676826	+	85	90421528	RPC_R0010	-	^{15 Leu tRNA}
867054	867128	+	75	90421528	RPC_R0013	-	^{13 Val tRNA}
904030	904106	+	77	90421528	RPC_R0014	-	^{11 Arg tRNA}
1082975	1083051	+	77	90421528	RPC_R0015	-	^{16 Met tRNA}
1260373	1260447	+	75	90421528	RPC_R0016	-	^{05 Gln tRNA}
1384247	1384427	-	181	90421528	RPC_R0055	-	Cobalamin riboswitch
1456591	1458079	+	1489	90421528	RPC_R0018	-	16S ribosomal RNA
1458308	1458384	+	77	90421528	RPC_R0019	-	^{14 Ile tRNA}
1458527	1458602	+	76	90421528	RPC_R0020	-	^{02 Ala tRNA}
1459096	1461942	+	2847	90421528	RPC_R0021	-	23S ribosomal RNA
1462100	1462214	+	115	90421528	RPC_R0022	-	5S ribosomal RNA
1685576	1685651	-	76	90421528	RPC_R0027	-	Xaa tRNA
1703869	1703961	-	93	90421528	RPC_R0050	-
1703962	1704052	-	91	90421528	RPC_R0049	-
2063445	2063662	-	218	90421528	RPC_R0043	-	Cobalamin riboswitch
2130252	2130464	+	213	90421528	RPC_R0041	-	Cobalamin riboswitch
2380426	2380791	-	366	90421528	RPC_R0028	-	RNA component of RNaseP
2593815	2593899	+	85	90421528	RPC_R0029	-	^{15 Leu tRNA}
2600901	2600975	-	75	90421528	RPC_R0030	-	^{13 Val tRNA}
2603261	2603337	+	77	90421528	RPC_R0031	-	^{06 Asp tRNA}
2750128	2750204	-	77	90421528	RPC_R0032	-	^{11 Arg tRNA}
2783459	2783532	+	74	90421528	RPC_R0033	-	^{19 Cys tRNA}
2785284	2785358	-	75	90421528	RPC_R0034	-	^{07 Asn tRNA}
2825526	2825601	-	76	90421528	RPC_R0035	-	^{10 Lys tRNA}
2907932	2908009	+	78	90421528	RPC_R0036	-	^{03 Pro tRNA}
3029645	3029721	-	77	90421528	RPC_R0037	-	^{03 Pro tRNA}
3035737	3035811	+	75	90421528	RPC_R0038	-	^{04 Glu tRNA}
3147536	3147629	+	94	90421528	RPC_R0039	-	^{08 Ser tRNA}
3213093	3213182	-	90	90421528	RPC_R0040	-	^{08 Ser tRNA}
3445449	3445523	+	75	90421528	RPC_R0042	-	^{12 Thr tRNA}
3494523	3494609	-	87	90421528	RPC_R0044	-	^{15 Leu tRNA}
3576705	3576780	-	76	90421528	RPC_R0045	-	^{10 Lys tRNA}
3618261	3618577	+	317	90421528	RPC_R0046	-	tmRNA
3703029	3703113	-	85	90421528	RPC_R0047	-	^{15 Leu tRNA}
3716844	3716920	+	77	90421528	RPC_R0048	-	^{11 Arg tRNA}
3857770	3857845	-	76	90421528	RPC_R0051	-	^{20 Trp tRNA}
3897187	3897402	-	216	90421528	RPC_R0026	-	Cobalamin riboswitch
3900119	3900330	-	212	90421528	RPC_R0025	-
3909716	3909916	-	201	90421528	RPC_R0024	-	Cobalamin riboswitch
3914312	3914520	-	209	90421528	RPC_R0023	-	Cobalamin riboswitch
4028116	4028189	-	74	90421528	RPC_R0052	-	^{01 Gly tRNA}
4049052	4049137	-	86	90421528	RPC_R0053	-	^{18 Tyr tRNA}
4061623	4061696	+	74	90421528	RPC_R0054	-	^{05 Gln tRNA}
4173288	4173480	-	193	90421528	RPC_R0017	-	Cobalamin riboswitch
4214610	4214686	-	77	90421528	RPC_R0056	-	^{16 Met tRNA}
4264213	4264287	+	75	90421528	RPC_R0057	-	Xaa tRNA
4388267	4388343	-	77	90421528	RPC_R0058	-	^{09 His tRNA}
4697667	4697742	-	76	90421528	RPC_R0059	-	^{16 Met tRNA}
4734382	4734456	+	75	90421528	RPC_R0060	-	^{13 Val tRNA}
4737279	4737476	+	198	90421528	RPC_R0012	-	Cobalamin riboswitch
4742447	4742649	-	203	90421528	RPC_R0011	-	Cobalamin riboswitch
4762170	4762284	-	115	90421528	RPC_R0061	-	5S ribosomal RNA
4762442	4765288	-	2847	90421528	RPC_R0062	-	23S ribosomal RNA
4765838	4765913	-	76	90421528	RPC_R0063	-	^{02 Ala tRNA}
4766079	4766155	-	77	90421528	RPC_R0064	-	^{14 Ile tRNA}
4766378	4767866	-	1489	90421528	RPC_R0065	-	16S ribosomal RNA
4806829	4806905	+	77	90421528	RPC_R0066	-	^{03 Pro tRNA}
4920824	4920899	-	76	90421528	RPC_R0067	-	^{17 Phe tRNA}
4930951	4931025	+	75	90421528	RPC_R0068	-	^{12 Thr tRNA}
5047693	5047782	-	90	90421528	RPC_R0069	-	^{08 Ser tRNA}
5067660	5067771	-	112	90421528	RPC_R0006	-
5178054	5178130	+	77	90421528	RPC_R0070	-	^{11 Arg tRNA}
5410499	5410603	-	105	90421528	RPC_R0071	-	SRP RNA; RNA component of signal recognition particle
5467574	5467647	-	74	90421528	RPC_R0073	-	^{01 Gly tRNA}