Геном прокариот/Материалы:NC 007948
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Базовый уровень статей |
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LOCUS NC_007948 5200264 bp DNA circular BCT 13-APR-2006
DEFINITION Polaromonas sp. JS666, complete genome.
ACCESSION NC_007948
VERSION NC_007948.1 GI:91785913
KEYWORDS .
SOURCE Polaromonas sp. JS666
ORGANISM Polaromonas sp. JS666
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Polaromonas.
REFERENCE 1 (bases 1 to 5200264)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Anderson,I. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Polaromonas sp. JS666
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5200264)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5200264)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Anderson,I. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (03-APR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000316.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634502
Source DNA and bacteria available from James Gossett
(jmg18@cornell.edu)
Contacts: James Gossett (jmg18@cornell.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 39480 | 39591 | + | 112 | 91785913 | Bpro_R0051 | - | |
| 303538 | 303613 | - | 76 | 91785913 | Bpro_R0001 | - | 02 Ala tRNA |
| 389805 | 389880 | + | 76 | 91785913 | Bpro_R0002 | - | 11 Arg tRNA |
| 512117 | 512193 | + | 77 | 91785913 | Bpro_R0003 | - | 16 Met tRNA |
| 847808 | 847883 | + | 76 | 91785913 | Bpro_R0004 | - | 12 Thr tRNA |
| 863111 | 863187 | + | 77 | 91785913 | Bpro_R0005 | - | 03 Pro tRNA |
| 977497 | 977584 | + | 88 | 91785913 | Bpro_R0006 | - | 08 Ser tRNA |
| 1076916 | 1077193 | + | 278 | 91785913 | Bpro_R0007 | - | RNA component of RNaseP |
| 1159489 | 1159565 | - | 77 | 91785913 | Bpro_R0008 | - | 16 Met tRNA |
| 1261385 | 1261459 | - | 75 | 91785913 | Bpro_R0009 | - | 11 Arg tRNA |
| 1336133 | 1336209 | - | 77 | 91785913 | Bpro_R0010 | - | 05 Gln tRNA |
| 1348329 | 1348405 | + | 77 | 91785913 | Bpro_R0011 | - | 16 Met tRNA |
| 1372288 | 1372364 | + | 77 | 91785913 | Bpro_R0012 | - | 11 Arg tRNA |
| 1385022 | 1385111 | - | 90 | 91785913 | Bpro_R0013 | - | 08 Ser tRNA |
| 1522987 | 1523056 | + | 70 | 91785913 | Bpro_R0014 | - | 14 Ile tRNA |
| 1635757 | 1635832 | - | 76 | 91785913 | Bpro_R0015 | - | 12 Thr tRNA |
| 1662458 | 1662533 | + | 76 | 91785913 | Bpro_R0016 | - | 02 Ala tRNA |
| 1662620 | 1662695 | + | 76 | 91785913 | Bpro_R0017 | - | 04 Glu tRNA |
| 1662795 | 1662871 | + | 77 | 91785913 | Bpro_R0018 | - | 06 Asp tRNA |
| 1861517 | 1861900 | + | 384 | 91785913 | Bpro_R0019 | - | tmRNA |
| 1930584 | 1930680 | - | 97 | 91785913 | Bpro_R0055 | - | |
| 1930708 | 1930819 | - | 112 | 91785913 | Bpro_R0056 | - | |
| 2021019 | 2021092 | - | 74 | 91785913 | Bpro_R0020 | - | 01 Gly tRNA |
| 2056369 | 2056444 | + | 76 | 91785913 | Bpro_R0021 | - | 10 Lys tRNA |
| 2102385 | 2102471 | + | 87 | 91785913 | Bpro_R0022 | - | 15 Leu tRNA |
| 2108684 | 2108759 | + | 76 | 91785913 | Bpro_R0023 | - | 01 Gly tRNA |
| 2108864 | 2108937 | + | 74 | 91785913 | Bpro_R0024 | - | 19 Cys tRNA |
| 2109011 | 2109103 | + | 93 | 91785913 | Bpro_R0025 | - | 15 Leu tRNA |
| 2199178 | 2199254 | + | 77 | 91785913 | Bpro_R0026 | - | 03 Pro tRNA |
| 2280069 | 2280143 | + | 75 | 91785913 | Bpro_R0027 | - | 13 Val tRNA |
| 2360018 | 2360119 | - | 102 | 91785913 | Bpro_R0028 | - | SRP RNA; RNA component of signal recognition particle |
| 2422284 | 2422359 | + | 76 | 91785913 | Bpro_R0029 | - | 07 Asn tRNA |
| 2510476 | 2510565 | - | 90 | 91785913 | Bpro_R0030 | - | 08 Ser tRNA |
| 2844707 | 2844791 | + | 85 | 91785913 | Bpro_R0031 | - | 15 Leu tRNA |
| 2847278 | 2847354 | - | 77 | 91785913 | Bpro_R0032 | - | 13 Val tRNA |
| 2929075 | 2929365 | - | 291 | 91785913 | Bpro_R0052 | - | |
| 3015144 | 3015236 | - | 93 | 91785913 | Bpro_R0033 | - | 08 Ser tRNA |
| 3136016 | 3136092 | - | 77 | 91785913 | Bpro_R0034 | - | 11 Arg tRNA |
| 3136151 | 3136227 | - | 77 | 91785913 | Bpro_R0035 | - | 03 Pro tRNA |
| 3229072 | 3229147 | - | 76 | 91785913 | Bpro_R0036 | - | 09 His tRNA |
| 3231206 | 3231281 | - | 76 | 91785913 | Bpro_R0037 | - | 13 Val tRNA |
| 3447218 | 3447302 | - | 85 | 91785913 | Bpro_R0038 | - | 15 Leu tRNA |
| 3934264 | 3934348 | + | 85 | 91785913 | Bpro_R0039 | - | 15 Leu tRNA |
| 4407321 | 4407421 | + | 101 | 91785913 | Bpro_R0054 | - | |
| 4407423 | 4407538 | + | 116 | 91785913 | Bpro_R0053 | - | |
| 4448265 | 4448377 | - | 113 | 91785913 | Bpro_R0040 | - | 5S ribosomal RNA |
| 4448521 | 4451403 | - | 2883 | 91785913 | Bpro_R0041 | - | 23S ribosomal RNA |
| 4451713 | 4451788 | - | 76 | 91785913 | Bpro_R0042 | - | 02 Ala tRNA |
| 4451816 | 4451892 | - | 77 | 91785913 | Bpro_R0043 | - | 14 Ile tRNA |
| 4452033 | 4453560 | - | 1528 | 91785913 | Bpro_R0044 | - | 16S ribosomal RNA |
| 4561988 | 4562063 | - | 76 | 91785913 | Bpro_R0045 | - | 01 Gly tRNA |
| 4680697 | 4680772 | - | 76 | 91785913 | Bpro_R0046 | - | 17 Phe tRNA |
| 4702455 | 4702530 | - | 76 | 91785913 | Bpro_R0047 | - | 20 Trp tRNA |
| 4703820 | 4703894 | - | 75 | 91785913 | Bpro_R0048 | - | 12 Thr tRNA |
| 4703962 | 4704035 | - | 74 | 91785913 | Bpro_R0049 | - | 01 Gly tRNA |
| 4704149 | 4704234 | - | 86 | 91785913 | Bpro_R0050 | - | 18 Tyr tRNA |
| 5188267 | 5188343 | - | 77 | 91785913 | Bpro_R0060 | - |