Геном прокариот/Материалы:NC 007951
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Базовый уровень статей |
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LOCUS NC_007951 4895836 bp DNA circular BCT 29-AUG-2006
DEFINITION Burkholderia xenovorans LB400 chromosome 1, complete sequence.
ACCESSION NC_007951
VERSION NC_007951.1 GI:91781384
KEYWORDS .
SOURCE Burkholderia xenovorans LB400
ORGANISM Burkholderia xenovorans LB400
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Burkholderia.
REFERENCE 1 (bases 1 to 4895836)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome 1 of Burkholderia xenovorans LB400
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4895836)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4895836)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2006) US DOE Joint Genome Instiute, 2800 Mitchell
Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000270.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2351477
Source DNA and bacteria available from Jim Tiedje
(tiedjej@pilot.msu.edu)
Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 50862 | 50937 | - | 76 | 91781384 | Bxe_AR0017 | - | 10 Lys tRNA |
| 71102 | 71177 | + | 76 | 91781384 | Bxe_AR0018 | - | 17 Phe tRNA |
| 178219 | 178294 | + | 76 | 91781384 | Bxe_AR0019 | - | 02 Ala tRNA |
| 364217 | 364293 | - | 77 | 91781384 | Bxe_AR0020 | - | 05 Gln tRNA |
| 606588 | 606663 | - | 76 | 91781384 | Bxe_AR0021 | - | 10 Lys tRNA |
| 1138430 | 1138519 | + | 90 | 91781384 | Bxe_AR0022 | - | 08 Ser tRNA |
| 1238741 | 1238815 | - | 75 | 91781384 | Bxe_AR0023 | - | 11 Arg tRNA |
| 1382094 | 1382178 | + | 85 | 91781384 | Bxe_AR0024 | - | 15 Leu tRNA |
| 1425593 | 1427082 | + | 1490 | 91781384 | Bxe_AR0025 | - | 16S ribosomal RNA |
| 1427154 | 1427230 | + | 77 | 91781384 | Bxe_AR0026 | - | 14 Ile tRNA |
| 1427312 | 1427387 | + | 76 | 91781384 | Bxe_AR0027 | - | 02 Ala tRNA |
| 1427682 | 1430563 | + | 2882 | 91781384 | Bxe_AR0028 | - | 23S ribosomal RNA |
| 1430738 | 1430851 | + | 114 | 91781384 | Bxe_AR0029 | - | 5S ribosomal RNA |
| 1498715 | 1498805 | + | 91 | 91781384 | Bxe_AR0030 | - | 08 Ser tRNA |
| 2069262 | 2069334 | + | 73 | 91781384 | Bxe_AR0031 | - | 10 Lys tRNA |
| 2120063 | 2120149 | - | 87 | 91781384 | Bxe_AR0032 | - | 15 Leu tRNA |
| 2120391 | 2120477 | - | 87 | 91781384 | Bxe_AR0033 | - | 15 Leu tRNA |
| 2166852 | 2166928 | - | 77 | 91781384 | Bxe_AR0034 | - | 16 Met tRNA |
| 2180200 | 2180275 | - | 76 | 91781384 | Bxe_AR0035 | - | 09 His tRNA |
| 2212587 | 2212659 | + | 73 | 91781384 | Bxe_AR0036 | - | 03 Pro tRNA |
| 2296886 | 2296988 | + | 103 | 91781384 | Bxe_AR0037 | - | SRP RNA; RNA component of signal recognition particle |
| 2367210 | 2367296 | + | 87 | 91781384 | Bxe_AR0038 | - | 15 Leu tRNA |
| 2378837 | 2378912 | + | 76 | 91781384 | Bxe_AR0039 | - | 13 Val tRNA |
| 2378960 | 2379036 | + | 77 | 91781384 | Bxe_AR0040 | - | 06 Asp tRNA |
| 3094406 | 3094482 | - | 77 | 91781384 | Bxe_AR0041 | - | 06 Asp tRNA |
| 3094575 | 3094650 | - | 76 | 91781384 | Bxe_AR0042 | - | 04 Glu tRNA |
| 3094712 | 3094788 | - | 77 | 91781384 | Bxe_AR0043 | - | 06 Asp tRNA |
| 3094892 | 3094967 | - | 76 | 91781384 | Bxe_AR0044 | - | 04 Glu tRNA |
| 3095133 | 3095208 | - | 76 | 91781384 | Bxe_AR0045 | - | 02 Ala tRNA |
| 3108646 | 3108739 | - | 94 | 91781384 | Bxe_AR0046 | - | 08 Ser tRNA |
| 3228193 | 3228269 | - | 77 | 91781384 | Bxe_AR0047 | - | 16 Met tRNA |
| 3294975 | 3295059 | - | 85 | 91781384 | Bxe_AR0048 | - | 15 Leu tRNA |
| 3394553 | 3394629 | - | 77 | 91781384 | Bxe_AR0049 | - | 03 Pro tRNA |
| 3402976 | 3403052 | - | 77 | 91781384 | Bxe_AR0050 | - | 13 Val tRNA |
| 3492237 | 3492310 | - | 74 | 91781384 | Bxe_AR0051 | - | 11 Arg tRNA |
| 3501367 | 3501443 | + | 77 | 91781384 | Bxe_AR0052 | - | 03 Pro tRNA |
| 3508757 | 3508828 | + | 72 | 91781384 | Bxe_AR0053 | - | Xaa tRNA |
| 3540795 | 3540869 | + | 75 | 91781384 | Bxe_AR0054 | - | 13 Val tRNA |
| 3559103 | 3559176 | - | 74 | 91781384 | Bxe_AR0055 | - | 19 Cys tRNA |
| 3559282 | 3559357 | - | 76 | 91781384 | Bxe_AR0056 | - | 01 Gly tRNA |
| 3682253 | 3682328 | - | 76 | 91781384 | Bxe_AR0057 | - | 01 Gly tRNA |
| 3730447 | 3730522 | + | 76 | 91781384 | Bxe_AR0058 | - | 07 Asn tRNA |
| 3730600 | 3730675 | + | 76 | 91781384 | Bxe_AR0059 | - | 07 Asn tRNA |
| 3815315 | 3815684 | + | 370 | 91781384 | Bxe_AR0060 | - | tmRNA |
| 3874543 | 3874618 | + | 76 | 91781384 | Bxe_AR0061 | - | 12 Thr tRNA |
| 3884542 | 3884618 | + | 77 | 91781384 | Bxe_AR0062 | - | 11 Arg tRNA |
| 3884697 | 3884773 | + | 77 | 91781384 | Bxe_AR0063 | - | 11 Arg tRNA |
| 3892724 | 3892813 | + | 90 | 91781384 | Bxe_AR0064 | - | 08 Ser tRNA |
| 3913262 | 3913335 | + | 74 | 91781384 | Bxe_AR0065 | - | 01 Gly tRNA |
| 3932680 | 3932764 | + | 85 | 91781384 | Bxe_AR0066 | - | 15 Leu tRNA |
| 4147251 | 4147327 | + | 77 | 91781384 | Bxe_AR0067 | - | 16 Met tRNA |
| 4209812 | 4210161 | - | 350 | 91781384 | Bxe_AR0068 | - | RNA component of RNaseP |
| 4320544 | 4320620 | + | 77 | 91781384 | Bxe_AR0069 | - | 03 Pro tRNA |
| 4361742 | 4361855 | - | 114 | 91781384 | Bxe_AR0070 | - | 5S ribosomal RNA |
| 4362031 | 4364912 | - | 2882 | 91781384 | Bxe_AR0071 | - | 23S ribosomal RNA |
| 4365207 | 4365282 | - | 76 | 91781384 | Bxe_AR0072 | - | 02 Ala tRNA |
| 4365364 | 4365440 | - | 77 | 91781384 | Bxe_AR0073 | - | 14 Ile tRNA |
| 4365513 | 4367002 | - | 1490 | 91781384 | Bxe_AR0074 | - | 16S ribosomal RNA |
| 4423130 | 4423205 | - | 76 | 91781384 | Bxe_AR0075 | - | 12 Thr tRNA |
| 4533929 | 4534004 | - | 76 | 91781384 | Bxe_AR0076 | - | 20 Trp tRNA |
| 4535323 | 4535397 | - | 75 | 91781384 | Bxe_AR0077 | - | 12 Thr tRNA |
| 4535414 | 4535487 | - | 74 | 91781384 | Bxe_AR0078 | - | 01 Gly tRNA |
| 4535530 | 4535615 | - | 86 | 91781384 | Bxe_AR0079 | - | 18 Tyr tRNA |
| 4535773 | 4535886 | - | 114 | 91781384 | Bxe_AR0080 | - | 5S ribosomal RNA |
| 4536062 | 4538943 | - | 2882 | 91781384 | Bxe_AR0081 | - | 23S ribosomal RNA |
| 4539238 | 4539313 | - | 76 | 91781384 | Bxe_AR0082 | - | 02 Ala tRNA |
| 4539395 | 4539471 | - | 77 | 91781384 | Bxe_AR0083 | - | 14 Ile tRNA |
| 4539544 | 4541033 | - | 1490 | 91781384 | Bxe_AR0084 | - | 16S ribosomal RNA |
| 4773429 | 4773504 | - | 76 | 91781384 | Bxe_AR0085 | - | 11 Arg tRNA |