Геном прокариот/Материалы:NC 007964
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Базовый уровень статей |
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LOCUS NC_007964 4406967 bp DNA circular BCT 17-APR-2006
DEFINITION Nitrobacter hamburgensis X14, complete genome.
ACCESSION NC_007964
VERSION NC_007964.1 GI:92115633
KEYWORDS .
SOURCE Nitrobacter hamburgensis X14
ORGANISM Nitrobacter hamburgensis X14
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Bradyrhizobiaceae; Nitrobacter.
REFERENCE 1 (bases 1 to 4406967)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D.,
Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Nitrobacter hamburgensis X14
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4406967)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4406967)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M.,
Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
Poret-Peterson,A.T., Gentry,M.E. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (28-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000319.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634489
Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
Contacts: Dan Arp (arpd@bcc.orst.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 95235 | 95309 | - | 75 | 92115633 | Nham_R0001 | - | 01 Gly tRNA |
| 188039 | 188114 | + | 76 | 92115633 | Nham_R0002 | - | 02 Ala tRNA |
| 202647 | 202733 | - | 87 | 92115633 | Nham_R0003 | - | 15 Leu tRNA |
| 236858 | 236931 | - | 74 | 92115633 | Nham_R0004 | - | 01 Gly tRNA |
| 315665 | 315739 | - | 75 | 92115633 | Nham_R0005 | - | 12 Thr tRNA |
| 324825 | 324900 | + | 76 | 92115633 | Nham_R0006 | - | 17 Phe tRNA |
| 511488 | 511592 | + | 105 | 92115633 | Nham_R0007 | - | SRP RNA; RNA component of signal recognition particle |
| 566183 | 566259 | + | 77 | 92115633 | Nham_R0008 | - | 11 Arg tRNA |
| 567886 | 567975 | - | 90 | 92115633 | Nham_R0009 | - | 08 Ser tRNA |
| 627348 | 627423 | + | 76 | 92115633 | Nham_R0010 | - | 12 Thr tRNA |
| 660095 | 660171 | - | 77 | 92115633 | Nham_R0011 | - | 03 Pro tRNA |
| 668215 | 668290 | - | 76 | 92115633 | Nham_R0012 | - | 02 Ala tRNA |
| 723627 | 725115 | + | 1489 | 92115633 | Nham_R0013 | - | 16S ribosomal RNA |
| 725322 | 725398 | + | 77 | 92115633 | Nham_R0014 | - | 14 Ile tRNA |
| 725431 | 725506 | + | 76 | 92115633 | Nham_R0015 | - | 02 Ala tRNA |
| 725920 | 728782 | + | 2863 | 92115633 | Nham_R0016 | - | 23S ribosomal RNA |
| 728859 | 728973 | + | 115 | 92115633 | Nham_R0017 | - | 5S ribosomal RNA |
| 771213 | 771289 | + | 77 | 92115633 | Nham_R0018 | - | 16 Met tRNA |
| 865255 | 865329 | + | 75 | 92115633 | Nham_R0019 | - | 05 Gln tRNA |
| 1295042 | 1295116 | + | 75 | 92115633 | Nham_R0020 | - | 13 Val tRNA |
| 1412851 | 1412927 | + | 77 | 92115633 | Nham_R0021 | - | 09 His tRNA |
| 1713473 | 1713546 | - | 74 | 92115633 | Nham_R0022 | - | 05 Gln tRNA |
| 1731511 | 1731586 | + | 76 | 92115633 | Nham_R0023 | - | 20 Trp tRNA |
| 1792083 | 1792160 | + | 78 | 92115633 | Nham_R0024 | - | 03 Pro tRNA |
| 1796622 | 1796694 | - | 73 | 92115633 | Nham_R0025 | - | Xaa tRNA |
| 1820749 | 1820837 | - | 89 | 92115633 | Nham_R0026 | - | |
| 1820838 | 1820941 | - | 104 | 92115633 | Nham_R0027 | - | |
| 1978594 | 1978669 | - | 76 | 92115633 | Nham_R0028 | - | 10 Lys tRNA |
| 1988699 | 1988773 | - | 75 | 92115633 | Nham_R0029 | - | 07 Asn tRNA |
| 2240909 | 2240998 | + | 90 | 92115633 | Nham_R0030 | - | 08 Ser tRNA |
| 2285661 | 2285734 | - | 74 | 92115633 | Nham_R0031 | - | 19 Cys tRNA |
| 2317498 | 2317574 | + | 77 | 92115633 | Nham_R0032 | - | 11 Arg tRNA |
| 2382701 | 2382777 | - | 77 | 92115633 | Nham_R0033 | - | 03 Pro tRNA |
| 2386826 | 2386900 | + | 75 | 92115633 | Nham_R0034 | - | 04 Glu tRNA |
| 2402366 | 2402450 | - | 85 | 92115633 | Nham_R0035 | - | 15 Leu tRNA |
| 2414309 | 2414385 | + | 77 | 92115633 | Nham_R0036 | - | 11 Arg tRNA |
| 2471611 | 2471687 | - | 77 | 92115633 | Nham_R0037 | - | 06 Asp tRNA |
| 2475605 | 2475681 | - | 77 | 92115633 | Nham_R0038 | - | 13 Val tRNA |
| 2482828 | 2482912 | - | 85 | 92115633 | Nham_R0039 | - | 15 Leu tRNA |
| 2521326 | 2521419 | + | 94 | 92115633 | Nham_R0040 | - | 08 Ser tRNA |
| 2750455 | 2750528 | - | 74 | 92115633 | Nham_R0041 | - | 01 Gly tRNA |
| 2762140 | 2762225 | - | 86 | 92115633 | Nham_R0042 | - | 18 Tyr tRNA |
| 2765240 | 2765314 | + | 75 | 92115633 | Nham_R0043 | - | 12 Thr tRNA |
| 2845541 | 2845629 | - | 89 | 92115633 | Nham_R0044 | - | 15 Leu tRNA |
| 2878648 | 2878845 | + | 198 | 92115633 | Nham_R0045 | - | |
| 2989953 | 2990028 | - | 76 | 92115633 | Nham_R0046 | - | 10 Lys tRNA |
| 3009412 | 3009747 | + | 336 | 92115633 | Nham_R0047 | - | tmRNA |
| 3149021 | 3149095 | - | 75 | 92115633 | Nham_R0048 | - | 04 Glu tRNA |
| 3167952 | 3168026 | + | 75 | 92115633 | Nham_R0049 | - | Xaa tRNA |
| 3168336 | 3168408 | - | 73 | 92115633 | Nham_R0050 | - | Xaa tRNA |
| 3168513 | 3168587 | + | 75 | 92115633 | Nham_R0051 | - | Xaa tRNA |
| 3179513 | 3179867 | + | 355 | 92115633 | Nham_R0052 | - | RNA component of RNaseP |
| 3185661 | 3185796 | + | 136 | 92115633 | Nham_R0053 | - | |
| 3696554 | 3696631 | + | 78 | 92115633 | Nham_R0054 | - | Xaa tRNA |
| 3702623 | 3702698 | - | 76 | 92115633 | Nham_R0055 | - | 16 Met tRNA |
| 3722103 | 3722177 | + | 75 | 92115633 | Nham_R0056 | - | 13 Val tRNA |
| 3786754 | 3786830 | - | 77 | 92115633 | Nham_R0057 | - | 16 Met tRNA |
| 3844879 | 3844963 | + | 85 | 92115633 | Nham_R0058 | - | 15 Leu tRNA |
| 3982481 | 3982570 | + | 90 | 92115633 | Nham_R0059 | - | 08 Ser tRNA |
| 4032764 | 4032968 | - | 205 | 92115633 | Nham_R0060 | - | |
| 4033871 | 4034093 | + | 223 | 92115633 | Nham_R0061 | - | |
| 4078903 | 4078979 | + | 77 | 92115633 | Nham_R0062 | - | 11 Arg tRNA |
| 4110750 | 4110955 | - | 206 | 92115633 | Nham_R0063 | - | |
| 4137138 | 4137208 | - | 71 | 92115633 | Nham_R0064 | - | 03 Pro tRNA |
| 4373936 | 4374005 | - | 70 | 92115633 | Nham_R0065 | - | 13 Val tRNA |
| 4377528 | 4377604 | - | 77 | 92115633 | Nham_R0066 | - | 03 Pro tRNA |
| 4391773 | 4391849 | + | 77 | 92115633 | Nham_R0067 | - | 03 Pro tRNA |
| 4401397 | 4401473 | - | 77 | 92115633 | Nham_R0068 | - | 11 Arg tRNA |