Геном прокариот/Материалы:NC 007969
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Базовый уровень статей |
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LOCUS NC_007969 3059876 bp DNA circular BCT 20-APR-2006
DEFINITION Psychrobacter cryohalolentis K5, complete genome.
ACCESSION NC_007969
VERSION NC_007969.1 GI:93004831
KEYWORDS .
SOURCE Psychrobacter cryohalolentis K5
ORGANISM Psychrobacter cryohalolentis K5
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Moraxellaceae; Psychrobacter.
REFERENCE 1 (bases 1 to 3059876)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Psychrobacter cryohalolentis K5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3059876)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-APR-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3059876)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Kim,E. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000323.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3635662
Source DNA and bacteria available from Jim Tiedje
(tiedjej@pilot.msu.edu)
Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 81553 | 81637 | + | 85 | 93004831 | Pcryo_R0001 | - | 15 Leu tRNA |
| 81762 | 81838 | + | 77 | 93004831 | Pcryo_R0002 | - | 16 Met tRNA |
| 109242 | 109365 | - | 124 | 93004831 | Pcryo_R0003 | - | |
| 210869 | 210958 | + | 90 | 93004831 | Pcryo_R0004 | - | 08 Ser tRNA |
| 211142 | 211218 | + | 77 | 93004831 | Pcryo_R0005 | - | 11 Arg tRNA |
| 216675 | 216750 | - | 76 | 93004831 | Pcryo_R0006 | - | 05 Gln tRNA |
| 216993 | 217068 | - | 76 | 93004831 | Pcryo_R0007 | - | 05 Gln tRNA |
| 299721 | 299797 | + | 77 | 93004831 | Pcryo_R0008 | - | 03 Pro tRNA |
| 299890 | 299966 | + | 77 | 93004831 | Pcryo_R0009 | - | 11 Arg tRNA |
| 300007 | 300082 | + | 76 | 93004831 | Pcryo_R0010 | - | 09 His tRNA |
| 441130 | 441428 | + | 299 | 93004831 | Pcryo_R0011 | - | RNA component of RNaseP |
| 441620 | 441696 | + | 77 | 93004831 | Pcryo_R0012 | - | 16 Met tRNA |
| 518349 | 518424 | + | 76 | 93004831 | Pcryo_R0013 | - | 12 Thr tRNA |
| 518492 | 518575 | + | 84 | 93004831 | Pcryo_R0014 | - | 18 Tyr tRNA |
| 518661 | 518734 | + | 74 | 93004831 | Pcryo_R0015 | - | 01 Gly tRNA |
| 518852 | 518926 | + | 75 | 93004831 | Pcryo_R0016 | - | 12 Thr tRNA |
| 562629 | 562705 | - | 77 | 93004831 | Pcryo_R0017 | - | 11 Arg tRNA |
| 582651 | 582727 | - | 77 | 93004831 | Pcryo_R0018 | - | 03 Pro tRNA |
| 651956 | 653541 | + | 1586 | 93004831 | Pcryo_R0019 | - | 16S ribosomal RNA |
| 653627 | 653703 | + | 77 | 93004831 | Pcryo_R0020 | - | 14 Ile tRNA |
| 653710 | 653785 | + | 76 | 93004831 | Pcryo_R0021 | - | 02 Ala tRNA |
| 654165 | 656929 | + | 2765 | 93004831 | Pcryo_R0022 | - | 23S ribosomal RNA |
| 657208 | 657321 | + | 114 | 93004831 | Pcryo_R0023 | - | 5S ribosomal RNA |
| 665781 | 665856 | - | 76 | 93004831 | Pcryo_R0024 | - | 10 Lys tRNA |
| 666076 | 666151 | - | 76 | 93004831 | Pcryo_R0025 | - | 10 Lys tRNA |
| 825220 | 825295 | + | 76 | 93004831 | Pcryo_R0026 | - | 13 Val tRNA |
| 825361 | 825437 | + | 77 | 93004831 | Pcryo_R0027 | - | 06 Asp tRNA |
| 855715 | 855790 | - | 76 | 93004831 | Pcryo_R0028 | - | 07 Asn tRNA |
| 951452 | 951585 | - | 134 | 93004831 | Pcryo_R0029 | - | |
| 951647 | 951784 | - | 138 | 93004831 | Pcryo_R0030 | - | |
| 1149807 | 1149881 | - | 75 | 93004831 | Pcryo_R0031 | - | 01 Gly tRNA |
| 1186717 | 1186793 | - | 77 | 93004831 | Pcryo_R0032 | - | 16 Met tRNA |
| 1565759 | 1565834 | - | 76 | 93004831 | Pcryo_R0033 | - | 11 Arg tRNA |
| 1769323 | 1769436 | - | 114 | 93004831 | Pcryo_R0034 | - | SRP RNA; RNA component of signal recognition particle |
| 1887509 | 1887595 | + | 87 | 93004831 | Pcryo_R0035 | - | 15 Leu tRNA |
| 1969140 | 1969213 | + | 74 | 93004831 | Pcryo_R0036 | - | 19 Cys tRNA |
| 1969339 | 1969425 | + | 87 | 93004831 | Pcryo_R0037 | - | 15 Leu tRNA |
| 2008296 | 2008654 | - | 359 | 93004831 | Pcryo_R0038 | - | tmRNA |
| 2127379 | 2127463 | + | 85 | 93004831 | Pcryo_R0039 | - | 15 Leu tRNA |
| 2148132 | 2148207 | + | 76 | 93004831 | Pcryo_R0040 | - | 13 Val tRNA |
| 2148273 | 2148349 | + | 77 | 93004831 | Pcryo_R0041 | - | 06 Asp tRNA |
| 2181888 | 2181964 | + | 77 | 93004831 | Pcryo_R0042 | - | 13 Val tRNA |
| 2270834 | 2270909 | + | 76 | 93004831 | Pcryo_R0043 | - | 07 Asn tRNA |
| 2272452 | 2272542 | - | 91 | 93004831 | Pcryo_R0044 | - | 08 Ser tRNA |
| 2306189 | 2306264 | + | 76 | 93004831 | Pcryo_R0045 | - | 04 Glu tRNA |
| 2531014 | 2531088 | - | 75 | 93004831 | Pcryo_R0046 | - | 01 Gly tRNA |
| 2683541 | 2683616 | - | 76 | 93004831 | Pcryo_R0047 | - | 20 Trp tRNA |
| 2773998 | 2774111 | - | 114 | 93004831 | Pcryo_R0048 | - | 5S ribosomal RNA |
| 2774390 | 2777154 | - | 2765 | 93004831 | Pcryo_R0049 | - | 23S ribosomal RNA |
| 2777534 | 2777609 | - | 76 | 93004831 | Pcryo_R0050 | - | 02 Ala tRNA |
| 2777616 | 2777692 | - | 77 | 93004831 | Pcryo_R0051 | - | 14 Ile tRNA |
| 2777778 | 2779363 | - | 1586 | 93004831 | Pcryo_R0052 | - | 16S ribosomal RNA |
| 2882146 | 2882236 | + | 91 | 93004831 | Pcryo_R0053 | - | 08 Ser tRNA |
| 2930427 | 2930502 | + | 76 | 93004831 | Pcryo_R0054 | - | 02 Ala tRNA |
| 2930660 | 2930735 | + | 76 | 93004831 | Pcryo_R0055 | - | 04 Glu tRNA |
| 2974304 | 2974417 | - | 114 | 93004831 | Pcryo_R0056 | - | 5S ribosomal RNA |
| 2974696 | 2977460 | - | 2765 | 93004831 | Pcryo_R0057 | - | 23S ribosomal RNA |
| 2977840 | 2977915 | - | 76 | 93004831 | Pcryo_R0058 | - | 02 Ala tRNA |
| 2977922 | 2977998 | - | 77 | 93004831 | Pcryo_R0059 | - | 14 Ile tRNA |
| 2978084 | 2979669 | - | 1586 | 93004831 | Pcryo_R0060 | - | 16S ribosomal RNA |
| 2980427 | 2980540 | - | 114 | 93004831 | Pcryo_R0061 | - | 5S ribosomal RNA |
| 2980819 | 2983583 | - | 2765 | 93004831 | Pcryo_R0062 | - | 23S ribosomal RNA |
| 2983963 | 2984038 | - | 76 | 93004831 | Pcryo_R0063 | - | 02 Ala tRNA |
| 2984045 | 2984121 | - | 77 | 93004831 | Pcryo_R0064 | - | 14 Ile tRNA |
| 2984207 | 2985792 | - | 1586 | 93004831 | Pcryo_R0065 | - | 16S ribosomal RNA |
| 3019385 | 3019460 | + | 76 | 93004831 | Pcryo_R0066 | - | 17 Phe tRNA |