Геном прокариот/Материалы:NC 007969

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007969            3059876 bp    DNA     circular BCT 20-APR-2006
   DEFINITION  Psychrobacter cryohalolentis K5, complete genome.
   ACCESSION   NC_007969
   VERSION     NC_007969.1  GI:93004831
   KEYWORDS    .
   SOURCE      Psychrobacter cryohalolentis K5
     ORGANISM  Psychrobacter cryohalolentis K5
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Moraxellaceae; Psychrobacter.
   REFERENCE   1  (bases 1 to 3059876)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Psychrobacter cryohalolentis K5
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3059876)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3059876)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Kim,E. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (30-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000323.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3635662
               Source DNA and bacteria available from Jim Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: Jim Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
81553	81637	+	85	93004831	Pcryo_R0001	-	^{15 Leu tRNA}
81762	81838	+	77	93004831	Pcryo_R0002	-	^{16 Met tRNA}
109242	109365	-	124	93004831	Pcryo_R0003	-
210869	210958	+	90	93004831	Pcryo_R0004	-	^{08 Ser tRNA}
211142	211218	+	77	93004831	Pcryo_R0005	-	^{11 Arg tRNA}
216675	216750	-	76	93004831	Pcryo_R0006	-	^{05 Gln tRNA}
216993	217068	-	76	93004831	Pcryo_R0007	-	^{05 Gln tRNA}
299721	299797	+	77	93004831	Pcryo_R0008	-	^{03 Pro tRNA}
299890	299966	+	77	93004831	Pcryo_R0009	-	^{11 Arg tRNA}
300007	300082	+	76	93004831	Pcryo_R0010	-	^{09 His tRNA}
441130	441428	+	299	93004831	Pcryo_R0011	-	RNA component of RNaseP
441620	441696	+	77	93004831	Pcryo_R0012	-	^{16 Met tRNA}
518349	518424	+	76	93004831	Pcryo_R0013	-	^{12 Thr tRNA}
518492	518575	+	84	93004831	Pcryo_R0014	-	^{18 Tyr tRNA}
518661	518734	+	74	93004831	Pcryo_R0015	-	^{01 Gly tRNA}
518852	518926	+	75	93004831	Pcryo_R0016	-	^{12 Thr tRNA}
562629	562705	-	77	93004831	Pcryo_R0017	-	^{11 Arg tRNA}
582651	582727	-	77	93004831	Pcryo_R0018	-	^{03 Pro tRNA}
651956	653541	+	1586	93004831	Pcryo_R0019	-	16S ribosomal RNA
653627	653703	+	77	93004831	Pcryo_R0020	-	^{14 Ile tRNA}
653710	653785	+	76	93004831	Pcryo_R0021	-	^{02 Ala tRNA}
654165	656929	+	2765	93004831	Pcryo_R0022	-	23S ribosomal RNA
657208	657321	+	114	93004831	Pcryo_R0023	-	5S ribosomal RNA
665781	665856	-	76	93004831	Pcryo_R0024	-	^{10 Lys tRNA}
666076	666151	-	76	93004831	Pcryo_R0025	-	^{10 Lys tRNA}
825220	825295	+	76	93004831	Pcryo_R0026	-	^{13 Val tRNA}
825361	825437	+	77	93004831	Pcryo_R0027	-	^{06 Asp tRNA}
855715	855790	-	76	93004831	Pcryo_R0028	-	^{07 Asn tRNA}
951452	951585	-	134	93004831	Pcryo_R0029	-
951647	951784	-	138	93004831	Pcryo_R0030	-
1149807	1149881	-	75	93004831	Pcryo_R0031	-	^{01 Gly tRNA}
1186717	1186793	-	77	93004831	Pcryo_R0032	-	^{16 Met tRNA}
1565759	1565834	-	76	93004831	Pcryo_R0033	-	^{11 Arg tRNA}
1769323	1769436	-	114	93004831	Pcryo_R0034	-	SRP RNA; RNA component of signal recognition particle
1887509	1887595	+	87	93004831	Pcryo_R0035	-	^{15 Leu tRNA}
1969140	1969213	+	74	93004831	Pcryo_R0036	-	^{19 Cys tRNA}
1969339	1969425	+	87	93004831	Pcryo_R0037	-	^{15 Leu tRNA}
2008296	2008654	-	359	93004831	Pcryo_R0038	-	tmRNA
2127379	2127463	+	85	93004831	Pcryo_R0039	-	^{15 Leu tRNA}
2148132	2148207	+	76	93004831	Pcryo_R0040	-	^{13 Val tRNA}
2148273	2148349	+	77	93004831	Pcryo_R0041	-	^{06 Asp tRNA}
2181888	2181964	+	77	93004831	Pcryo_R0042	-	^{13 Val tRNA}
2270834	2270909	+	76	93004831	Pcryo_R0043	-	^{07 Asn tRNA}
2272452	2272542	-	91	93004831	Pcryo_R0044	-	^{08 Ser tRNA}
2306189	2306264	+	76	93004831	Pcryo_R0045	-	^{04 Glu tRNA}
2531014	2531088	-	75	93004831	Pcryo_R0046	-	^{01 Gly tRNA}
2683541	2683616	-	76	93004831	Pcryo_R0047	-	^{20 Trp tRNA}
2773998	2774111	-	114	93004831	Pcryo_R0048	-	5S ribosomal RNA
2774390	2777154	-	2765	93004831	Pcryo_R0049	-	23S ribosomal RNA
2777534	2777609	-	76	93004831	Pcryo_R0050	-	^{02 Ala tRNA}
2777616	2777692	-	77	93004831	Pcryo_R0051	-	^{14 Ile tRNA}
2777778	2779363	-	1586	93004831	Pcryo_R0052	-	16S ribosomal RNA
2882146	2882236	+	91	93004831	Pcryo_R0053	-	^{08 Ser tRNA}
2930427	2930502	+	76	93004831	Pcryo_R0054	-	^{02 Ala tRNA}
2930660	2930735	+	76	93004831	Pcryo_R0055	-	^{04 Glu tRNA}
2974304	2974417	-	114	93004831	Pcryo_R0056	-	5S ribosomal RNA
2974696	2977460	-	2765	93004831	Pcryo_R0057	-	23S ribosomal RNA
2977840	2977915	-	76	93004831	Pcryo_R0058	-	^{02 Ala tRNA}
2977922	2977998	-	77	93004831	Pcryo_R0059	-	^{14 Ile tRNA}
2978084	2979669	-	1586	93004831	Pcryo_R0060	-	16S ribosomal RNA
2980427	2980540	-	114	93004831	Pcryo_R0061	-	5S ribosomal RNA
2980819	2983583	-	2765	93004831	Pcryo_R0062	-	23S ribosomal RNA
2983963	2984038	-	76	93004831	Pcryo_R0063	-	^{02 Ala tRNA}
2984045	2984121	-	77	93004831	Pcryo_R0064	-	^{14 Ile tRNA}
2984207	2985792	-	1586	93004831	Pcryo_R0065	-	16S ribosomal RNA
3019385	3019460	+	76	93004831	Pcryo_R0066	-	^{17 Phe tRNA}