Геном прокариот/Материалы:NC 008009
Внешний вид
Базовый уровень статей | |
LOCUS NC_008009 5650368 bp DNA circular BCT 10-MAY-2006 DEFINITION Candidatus Koribacter versatilis Ellin345, complete genome. ACCESSION NC_008009 VERSION NC_008009.1 GI:94967031 KEYWORDS . SOURCE Candidatus Koribacter versatilis Ellin345 ORGANISM Candidatus Koribacter versatilis Ellin345 Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae. REFERENCE 1 (bases 1 to 5650368) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Acidobacteria bacterium Ellin345 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5650368) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-MAY-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5650368) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000360. URL -- http://www.jgi.doe.gov JGI Project ID: 4000157 Source DNA and bacteria available from Cheryl Kuske (kuske@lanl.gov) Contacts: Cheryl Kuske (kuske@lanl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.
Расположение РНК
[править]Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
226249 | 226325 | - | 77 | 94967031 | Acid345_R0001 | - | 11 Arg tRNA |
321964 | 322040 | - | 77 | 94967031 | Acid345_R0002 | - | 03 Pro tRNA |
327098 | 327184 | + | 87 | 94967031 | Acid345_R0003 | - | 15 Leu tRNA |
436855 | 436916 | + | 62 | 94967031 | Acid345_R0004 | - | |
478049 | 478137 | + | 89 | 94967031 | Acid345_R0005 | - | 15 Leu tRNA |
623241 | 623317 | + | 77 | 94967031 | Acid345_R0006 | - | 03 Pro tRNA |
782919 | 782994 | + | 76 | 94967031 | Acid345_R0007 | - | 10 Lys tRNA |
965656 | 965730 | + | 75 | 94967031 | Acid345_R0008 | - | 13 Val tRNA |
1015247 | 1015321 | + | 75 | 94967031 | Acid345_R0009 | - | 01 Gly tRNA |
1015412 | 1015486 | + | 75 | 94967031 | Acid345_R0010 | - | 19 Cys tRNA |
1319335 | 1319410 | + | 76 | 94967031 | Acid345_R0011 | - | 17 Phe tRNA |
1343299 | 1343372 | - | 74 | 94967031 | Acid345_R0012 | - | 05 Gln tRNA |
1411021 | 1411096 | + | 76 | 94967031 | Acid345_R0013 | - | 12 Thr tRNA |
1549908 | 1550249 | - | 342 | 94967031 | Acid345_R0014 | - | RNA component of RNaseP |
2183383 | 2183459 | - | 77 | 94967031 | Acid345_R0015 | - | 11 Arg tRNA |
2275711 | 2275787 | - | 77 | 94967031 | Acid345_R0016 | - | 11 Arg tRNA |
2284754 | 2284838 | - | 85 | 94967031 | Acid345_R0017 | - | 15 Leu tRNA |
2308256 | 2308330 | + | 75 | 94967031 | Acid345_R0018 | - | 07 Asn tRNA |
2354596 | 2354670 | - | 75 | 94967031 | Acid345_R0019 | - | 01 Gly tRNA |
2379908 | 2379997 | - | 90 | 94967031 | Acid345_R0020 | - | 08 Ser tRNA |
2416096 | 2416209 | + | 114 | 94967031 | Acid345_R0021 | - | SRP RNA; RNA component of signal recognition particle |
2480985 | 2481062 | - | 78 | 94967031 | Acid345_R0022 | - | 04 Glu tRNA |
2568155 | 2568230 | + | 76 | 94967031 | Acid345_R0023 | - | 02 Ala tRNA |
2891224 | 2891308 | + | 85 | 94967031 | Acid345_R0024 | - | 15 Leu tRNA |
3278034 | 3278109 | + | 76 | 94967031 | Acid345_R0025 | - | 10 Lys tRNA |
3458746 | 3458821 | - | 76 | 94967031 | Acid345_R0026 | - | Xaa tRNA |
3720631 | 3720719 | - | 89 | 94967031 | Acid345_R0027 | - | 15 Leu tRNA |
3783475 | 3783551 | + | 77 | 94967031 | Acid345_R0028 | - | 11 Arg tRNA |
3907637 | 3907713 | - | 77 | 94967031 | Acid345_R0029 | - | 16 Met tRNA |
4130979 | 4131054 | + | 76 | 94967031 | Acid345_R0030 | - | 16 Met tRNA |
4184267 | 4184328 | + | 62 | 94967031 | Acid345_R0031 | - | |
4447548 | 4447637 | - | 90 | 94967031 | Acid345_R0032 | - | 08 Ser tRNA |
4551744 | 4551819 | - | 76 | 94967031 | Acid345_R0033 | - | 02 Ala tRNA |
4614262 | 4614336 | - | 75 | 94967031 | Acid345_R0034 | - | 04 Glu tRNA |
4616518 | 4616592 | + | 75 | 94967031 | Acid345_R0035 | - | 09 His tRNA |
4689838 | 4689914 | - | 77 | 94967031 | Acid345_R0036 | - | 03 Pro tRNA |
4748291 | 4748368 | + | 78 | 94967031 | Acid345_R0037 | - | 13 Val tRNA |
4763124 | 4763200 | - | 77 | 94967031 | Acid345_R0038 | - | 06 Asp tRNA |
4763226 | 4763302 | - | 77 | 94967031 | Acid345_R0039 | - | 13 Val tRNA |
4776758 | 4776834 | + | 77 | 94967031 | Acid345_R0040 | - | 11 Arg tRNA |
5023050 | 5023126 | - | 77 | 94967031 | Acid345_R0041 | - | 16 Met tRNA |
5080202 | 5080294 | - | 93 | 94967031 | Acid345_R0042 | - | 08 Ser tRNA |
5256011 | 5256127 | - | 117 | 94967031 | Acid345_R0043 | - | 5S ribosomal RNA |
5256362 | 5259327 | - | 2966 | 94967031 | Acid345_R0044 | - | 23S ribosomal RNA |
5259667 | 5259742 | - | 76 | 94967031 | Acid345_R0045 | - | 02 Ala tRNA |
5259750 | 5259826 | - | 77 | 94967031 | Acid345_R0046 | - | 14 Ile tRNA |
5260068 | 5261561 | - | 1494 | 94967031 | Acid345_R0047 | - | 16S ribosomal RNA |
5276687 | 5276776 | - | 90 | 94967031 | Acid345_R0048 | - | 08 Ser tRNA |
5323474 | 5323676 | - | 203 | 94967031 | Acid345_R0049 | - | |
5385087 | 5385160 | - | 74 | 94967031 | Acid345_R0050 | - | 05 Gln tRNA |
5543513 | 5543588 | - | 76 | 94967031 | Acid345_R0051 | - | 20 Trp tRNA |
5545511 | 5545586 | - | 76 | 94967031 | Acid345_R0052 | - | 12 Thr tRNA |
5545607 | 5545681 | - | 75 | 94967031 | Acid345_R0053 | - | 01 Gly tRNA |
5545970 | 5546057 | - | 88 | 94967031 | Acid345_R0054 | - | 18 Tyr tRNA |
5546322 | 5546397 | - | 76 | 94967031 | Acid345_R0055 | - | 12 Thr tRNA |