Геном прокариот/Материалы:NC 008025
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Базовый уровень статей |
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LOCUS NC_008025 2467205 bp DNA circular BCT 09-MAY-2006
DEFINITION Deinococcus geothermalis DSM 11300, complete genome.
ACCESSION NC_008025
VERSION NC_008025.1 GI:94984109
KEYWORDS .
SOURCE Deinococcus geothermalis DSM 11300
ORGANISM Deinococcus geothermalis DSM 11300
Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales;
Deinococcaceae; Deinococcus.
REFERENCE 1 (bases 1 to 2467205)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
Zhai,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of geothermalis DSM 11300
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2467205)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (09-MAY-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2467205)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
Zhai,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000359.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634504
Source DNA available from Michael J Daly (mdaly@usuhs.mil)
Bacteria available from DSMZ: DSM 11300
Contacts: Michael J Daly (mdaly@usuhs.mil)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 78888 | 78963 | + | 76 | 94984109 | Dgeo_R0001 | - | 10 Lys tRNA |
| 157596 | 159088 | + | 1493 | 94984109 | Dgeo_R0002 | - | 16S ribosomal RNA |
| 177593 | 177668 | + | 76 | 94984109 | Dgeo_R0003 | - | 06 Asp tRNA |
| 177691 | 177766 | + | 76 | 94984109 | Dgeo_R0004 | - | 17 Phe tRNA |
| 227331 | 227407 | - | 77 | 94984109 | Dgeo_R0005 | - | 03 Pro tRNA |
| 231944 | 232019 | - | 76 | 94984109 | Dgeo_R0006 | - | 20 Trp tRNA |
| 291095 | 291247 | + | 153 | 94984109 | Dgeo_R0007 | - | |
| 325852 | 328741 | + | 2890 | 94984109 | Dgeo_R0008 | - | 23S ribosomal RNA |
| 328825 | 328941 | + | 117 | 94984109 | Dgeo_R0009 | - | 5S ribosomal RNA |
| 328951 | 329026 | + | 76 | 94984109 | Dgeo_R0010 | - | 01 Gly tRNA |
| 355227 | 355301 | - | 75 | 94984109 | Dgeo_R0011 | - | 04 Glu tRNA |
| 397070 | 397143 | + | 74 | 94984109 | Dgeo_R0012 | - | 05 Gln tRNA |
| 400326 | 401818 | + | 1493 | 94984109 | Dgeo_R0013 | - | 16S ribosomal RNA |
| 435353 | 435427 | - | 75 | 94984109 | Dgeo_R0014 | - | 07 Asn tRNA |
| 440201 | 440277 | + | 77 | 94984109 | Dgeo_R0015 | - | 09 His tRNA |
| 440331 | 440416 | + | 86 | 94984109 | Dgeo_R0016 | - | 15 Leu tRNA |
| 504686 | 504760 | + | 75 | 94984109 | Dgeo_R0017 | - | 04 Glu tRNA |
| 547213 | 547339 | - | 127 | 94984109 | Dgeo_R0018 | - | |
| 582403 | 582478 | - | 76 | 94984109 | Dgeo_R0019 | - | 02 Ala tRNA |
| 655453 | 655527 | + | 75 | 94984109 | Dgeo_R0020 | - | 02 Ala tRNA |
| 699950 | 700024 | - | 75 | 94984109 | Dgeo_R0021 | - | 12 Thr tRNA |
| 700034 | 700106 | - | 73 | 94984109 | Dgeo_R0022 | - | 01 Gly tRNA |
| 700110 | 700195 | - | 86 | 94984109 | Dgeo_R0023 | - | 18 Tyr tRNA |
| 700256 | 700331 | - | 76 | 94984109 | Dgeo_R0024 | - | 12 Thr tRNA |
| 827461 | 827828 | + | 368 | 94984109 | Dgeo_R0025 | - | RNA component of RNaseP |
| 1416271 | 1416345 | - | 75 | 94984109 | Dgeo_R0026 | - | 13 Val tRNA |
| 1435008 | 1435090 | - | 83 | 94984109 | Dgeo_R0027 | - | 15 Leu tRNA |
| 1463818 | 1463894 | + | 77 | 94984109 | Dgeo_R0028 | - | 16 Met tRNA |
| 1521063 | 1521139 | + | 77 | 94984109 | Dgeo_R0029 | - | 03 Pro tRNA |
| 1530030 | 1530105 | - | 76 | 94984109 | Dgeo_R0030 | - | 10 Lys tRNA |
| 1599558 | 1599632 | - | 75 | 94984109 | Dgeo_R0031 | - | 13 Val tRNA |
| 1599646 | 1599719 | - | 74 | 94984109 | Dgeo_R0032 | - | 19 Cys tRNA |
| 1647172 | 1647261 | - | 90 | 94984109 | Dgeo_R0033 | - | 08 Ser tRNA |
| 1676412 | 1676485 | - | 74 | 94984109 | Dgeo_R0034 | - | 05 Gln tRNA |
| 1702114 | 1702190 | - | 77 | 94984109 | Dgeo_R0035 | - | 11 Arg tRNA |
| 1850752 | 1850828 | - | 77 | 94984109 | Dgeo_R0036 | - | 14 Ile tRNA |
| 1886401 | 1886476 | + | 76 | 94984109 | Dgeo_R0037 | - | 06 Asp tRNA |
| 1916667 | 1916743 | - | 77 | 94984109 | Dgeo_R0038 | - | 11 Arg tRNA |
| 1916762 | 1916854 | - | 93 | 94984109 | Dgeo_R0039 | - | 08 Ser tRNA |
| 1916880 | 1916967 | - | 88 | 94984109 | Dgeo_R0040 | - | 08 Ser tRNA |
| 2010487 | 2010562 | - | 76 | 94984109 | Dgeo_R0041 | - | 01 Gly tRNA |
| 2010573 | 2010689 | - | 117 | 94984109 | Dgeo_R0042 | - | 5S ribosomal RNA |
| 2010773 | 2013662 | - | 2890 | 94984109 | Dgeo_R0043 | - | 23S ribosomal RNA |
| 2028181 | 2028298 | - | 118 | 94984109 | Dgeo_R0044 | - | |
| 2036288 | 2036401 | + | 114 | 94984109 | Dgeo_R0045 | - | |
| 2087728 | 2087804 | - | 77 | 94984109 | Dgeo_R0046 | - | 16 Met tRNA |
| 2087843 | 2087918 | - | 76 | 94984109 | Dgeo_R0047 | - | 02 Ala tRNA |
| 2090397 | 2090471 | - | 75 | 94984109 | Dgeo_R0048 | - | 13 Val tRNA |
| 2090498 | 2090573 | - | 76 | 94984109 | Dgeo_R0049 | - | 16 Met tRNA |
| 2111082 | 2111171 | + | 90 | 94984109 | Dgeo_R0050 | - | 08 Ser tRNA |
| 2118878 | 2119225 | + | 348 | 94984109 | Dgeo_R0051 | - | tmRNA |
| 2129216 | 2129302 | + | 87 | 94984109 | Dgeo_R0052 | - | 15 Leu tRNA |
| 2216152 | 2216226 | - | 75 | 94984109 | Dgeo_R0053 | - | 12 Thr tRNA |
| 2277302 | 2277386 | - | 85 | 94984109 | Dgeo_R0054 | - | 15 Leu tRNA |
| 2311081 | 2311164 | + | 84 | 94984109 | Dgeo_R0055 | - | 15 Leu tRNA |
| 2311247 | 2311352 | + | 106 | 94984109 | Dgeo_R0056 | - | SRP RNA; RNA component of signal recognition particle |
| 2353553 | 2353629 | - | 77 | 94984109 | Dgeo_R0057 | - | 11 Arg tRNA |
| 2353665 | 2353738 | - | 74 | 94984109 | Dgeo_R0058 | - | 01 Gly tRNA |
| 2353766 | 2353842 | - | 77 | 94984109 | Dgeo_R0059 | - | 03 Pro tRNA |
| 2360347 | 2361839 | - | 1493 | 94984109 | Dgeo_R0060 | - | 16S ribosomal RNA |
| 2372571 | 2372646 | - | 76 | 94984109 | Dgeo_R0061 | - | 01 Gly tRNA |
| 2372657 | 2372773 | - | 117 | 94984109 | Dgeo_R0062 | - | 5S ribosomal RNA |
| 2372857 | 2375746 | - | 2890 | 94984109 | Dgeo_R0063 | - | 23S ribosomal RNA |
| 2441584 | 2441660 | - | 77 | 94984109 | Dgeo_R0064 | - | 11 Arg tRNA |