Геном прокариот/Материалы:NC 008148

	Базовый уровень статей Выделить только проверенную информацию
	Создать черновик

Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008148            3225748 bp    DNA     circular BCT 12-JUN-2006
   DEFINITION  Rubrobacter xylanophilus DSM 9941, complete genome.
   ACCESSION   NC_008148
   VERSION     NC_008148.1  GI:108802856
   KEYWORDS    .
   SOURCE      Rubrobacter xylanophilus DSM 9941
     ORGANISM  Rubrobacter xylanophilus DSM 9941
               Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales;
               Rubrobacterineae; Rubrobacteraceae; Rubrobacter.
   REFERENCE   1  (bases 1 to 3225748)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
               Battista,J.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rubrobacter xylanophilus DSM 9941
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3225748)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3225748)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
               Battista,J.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000386.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436081
               Source DNA available from John R. Battista (jbattis@lsu.edu)
               Bacteria available from DSMZ: DSM 9941
               Contacts: John R. Battista (jbattis@lsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11389	11749	+	361	108802856	Rxyl_R0001	-	RNaseP RNA
15245	15317	-	73	108802856	Rxyl_R0002	-	^{01 Gly tRNA}
30643	30726	+	84	108802856	Rxyl_R0003	-	^{15 Leu tRNA}
298314	298455	+	142	108802856	Rxyl_R0004	-
371715	371785	+	71	108802856	Rxyl_R0005	-	^{05 Gln tRNA}
619467	619540	-	74	108802856	Rxyl_R0006	-	^{11 Arg tRNA}
663892	664074	+	183	108802856	Rxyl_R0007	-
780592	780681	-	90	108802856	Rxyl_R0008	-	^{08 Ser tRNA}
881920	882031	-	112	108802856	Rxyl_R0009	-
934242	934315	+	74	108802856	Rxyl_R0010	-	^{05 Gln tRNA}
955404	955477	+	74	108802856	Rxyl_R0011	-	^{15 Leu tRNA}
1024685	1024758	+	74	108802856	Rxyl_R0012	-	^{03 Pro tRNA}
1038628	1038702	+	75	108802856	Rxyl_R0013	-	^{10 Lys tRNA}
1038703	1038775	+	73	108802856	Rxyl_R0014	-	^{04 Glu tRNA}
1038792	1038863	+	72	108802856	Rxyl_R0015	-	^{13 Val tRNA}
1040076	1040149	+	74	108802856	Rxyl_R0016	-	^{06 Asp tRNA}
1040568	1040640	+	73	108802856	Rxyl_R0017	-	^{17 Phe tRNA}
1121068	1121189	+	122	108802856	Rxyl_R0018	-
1324076	1324148	+	73	108802856	Rxyl_R0019	-	^{01 Gly tRNA}
1324169	1324239	+	71	108802856	Rxyl_R0020	-	^{19 Cys tRNA}
1324262	1324333	+	72	108802856	Rxyl_R0021	-	^{13 Val tRNA}
1337366	1338878	+	1513	108802856	Rxyl_R0022	-	16S ribosomal RNA
1339144	1342143	+	3000	108802856	Rxyl_R0023	-	23S ribosomal RNA
1342229	1342345	+	117	108802856	Rxyl_R0024	-	5S ribosomal RNA
1391592	1391741	+	150	108802856	Rxyl_R0025	-
1521231	1521304	-	74	108802856	Rxyl_R0026	-	^{16 Met tRNA}
1521307	1521381	-	75	108802856	Rxyl_R0027	-	^{07 Asn tRNA}
1539823	1539895	-	73	108802856	Rxyl_R0028	-	^{02 Ala tRNA}
1556071	1556154	-	84	108802856	Rxyl_R0029	-	^{15 Leu tRNA}
1584674	1584746	-	73	108802856	Rxyl_R0030	-	^{09 His tRNA}
1616352	1616424	-	73	108802856	Rxyl_R0031	-	^{11 Arg tRNA}
1625329	1625399	-	71	108802856	Rxyl_R0032	-	^{01 Gly tRNA}
1625420	1625494	-	75	108802856	Rxyl_R0033	-	^{03 Pro tRNA}
1626431	1626790	-	360	108802856	Rxyl_R0034	-	tmRNA
1947946	1948018	-	73	108802856	Rxyl_R0035	-	^{12 Thr tRNA}
2002611	2002699	-	89	108802856	Rxyl_R0036	-	Sec tRNA
2024178	2024265	+	88	108802856	Rxyl_R0037	-	^{15 Leu tRNA}
2059938	2060021	+	84	108802856	Rxyl_R0038	-	^{15 Leu tRNA}
2112145	2112255	+	111	108802856	Rxyl_R0039	-
2184005	2184077	-	73	108802856	Rxyl_R0040	-	^{20 Trp tRNA}
2185578	2185651	-	74	108802856	Rxyl_R0041	-	^{16 Met tRNA}
2185683	2185755	-	73	108802856	Rxyl_R0042	-	^{12 Thr tRNA}
2185766	2185851	-	86	108802856	Rxyl_R0043	-	^{18 Tyr tRNA}
2185936	2186007	-	72	108802856	Rxyl_R0044	-	^{12 Thr tRNA}
2206288	2206361	-	74	108802856	Rxyl_R0045	-	^{16 Met tRNA}
2228976	2229050	+	75	108802856	Rxyl_R0046	-	^{13 Val tRNA}
2293628	2293700	+	73	108802856	Rxyl_R0047	-	^{02 Ala tRNA}
2295938	2296043	+	106	108802856	Rxyl_R0048	-
2304069	2304141	-	73	108802856	Rxyl_R0049	-	^{11 Arg tRNA}
2308212	2308285	-	74	108802856	Rxyl_R0050	-	^{03 Pro tRNA}
2406044	2406137	+	94	108802856	Rxyl_R0051	-
2455474	2455546	-	73	108802856	Rxyl_R0052	-	^{02 Ala tRNA}
2457560	2457662	+	103	108802856	Rxyl_R0053	-	SRP RNA; RNA component of signal recognition particle
2476169	2476242	-	74	108802856	Rxyl_R0054	-	^{14 Ile tRNA}
2484065	2484294	+	230	108802856	Rxyl_R0055	-
2590390	2590480	-	91	108802856	Rxyl_R0056	-	^{08 Ser tRNA}
2605957	2606029	+	73	108802856	Rxyl_R0057	-	^{11 Arg tRNA}
2661013	2661085	+	73	108802856	Rxyl_R0058	-	^{10 Lys tRNA}
2670191	2670275	-	85	108802856	Rxyl_R0059	-	^{08 Ser tRNA}
2803867	2803972	-	106	108802856	Rxyl_R0060	-
2863858	2863933	+	76	108802856	Rxyl_R0061	-	^{04 Glu tRNA}
2875142	2875231	-	90	108802856	Rxyl_R0062	-	^{08 Ser tRNA}
3199881	3199953	-	73	108802856	Rxyl_R0063	-
3199954	3200053	-	100	108802856	Rxyl_R0064	-