Геном прокариот/Материалы:NC 008262
Внешний вид
Базовый уровень статей | |
LOCUS NC_008262 2897393 bp DNA circular BCT 14-AUG-2007 DEFINITION Clostridium perfringens SM101, complete genome. ACCESSION NC_008262 VERSION NC_008262.1 GI:110801439 KEYWORDS . SOURCE Clostridium perfringens SM101 ORGANISM Clostridium perfringens SM101 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. REFERENCE 1 (bases 1 to 2897393) AUTHORS Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mulligan,S., Benton,J., Radune,D., Fisher,D.J., Atkins,H.S., Hiscox,T., Jost,B.H., Billington,S.J., Songer,J.G., McClane,B.A., Titball,R.W., Rood,J.I., Melville,S.B. and Paulsen,I.T. TITLE Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens JOURNAL Genome Res. 16 (8), 1031-1040 (2006) PUBMED 16825665 REFERENCE 2 (bases 1 to 2897393) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2897393) AUTHORS Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M., Sullivan,S.A., Khouri,H.M., Dimitrov,G., Watkins,K.L., Mulligan,S., Benton,J.L., Fisher,D.J., Atkins,H.S., Hiscox,T., Jost,H., Billington,S.J., Songer,J.G., McClane,B.A., Titball,R.W., Rood,J.I., Melville,S. and Paulsen,I. TITLE Direct Submission JOURNAL Submitted (06-APR-2006) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000312. COMPLETENESS: full length.
Расположение РНК
[править]Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
9990 | 11511 | + | 1522 | 110801439 | CPR_r01 | - | 16S ribosomal RNA |
11692 | 14599 | + | 2908 | 110801439 | CPR_r02 | - | 23S ribosomal RNA |
14691 | 14818 | + | 128 | 110801439 | CPR_r03 | - | 5S ribosomal RNA |
14815 | 14891 | + | 77 | 110801439 | CPR_0008 | - | 16 Met tRNA |
14898 | 14973 | + | 76 | 110801439 | CPR_0009 | - | 02 Ala tRNA |
23343 | 23433 | + | 91 | 110801439 | CPR_0016 | - | 08 Ser tRNA |
23467 | 23557 | + | 91 | 110801439 | CPR_0017 | - | 08 Ser tRNA |
24189 | 24279 | + | 91 | 110801439 | CPR_0019 | - | 08 Ser tRNA |
24285 | 24375 | + | 91 | 110801439 | CPR_0020 | - | 08 Ser tRNA |
39655 | 39731 | + | 77 | 110801439 | CPR_0031 | - | 11 Arg tRNA |
42904 | 42978 | + | 75 | 110801439 | CPR_0035 | - | 11 Arg tRNA |
54005 | 54094 | + | 90 | 110801439 | CPR_0047 | - | 08 Ser tRNA |
75565 | 77086 | + | 1522 | 110801439 | CPR_r04 | - | 16S ribosomal RNA |
77267 | 80174 | + | 2908 | 110801439 | CPR_r05 | - | 23S ribosomal RNA |
80289 | 80415 | + | 127 | 110801439 | CPR_r06 | - | 5S ribosomal RNA |
80412 | 80487 | + | 76 | 110801439 | CPR_0071 | - | 10 Lys tRNA |
85852 | 87373 | + | 1522 | 110801439 | CPR_r07 | - | 16S ribosomal RNA |
87554 | 90461 | + | 2908 | 110801439 | CPR_r08 | - | 23S ribosomal RNA |
90552 | 90679 | + | 128 | 110801439 | CPR_r09 | - | 5S ribosomal RNA |
90676 | 90752 | + | 77 | 110801439 | CPR_0077 | - | 16 Met tRNA |
90758 | 90833 | + | 76 | 110801439 | CPR_0078 | - | 02 Ala tRNA |
107888 | 109409 | + | 1522 | 110801439 | CPR_r10 | - | 16S ribosomal RNA |
109590 | 112497 | + | 2908 | 110801439 | CPR_r11 | - | 23S ribosomal RNA |
112546 | 112672 | + | 127 | 110801439 | CPR_r12 | - | 5S ribosomal RNA |
112669 | 112744 | + | 76 | 110801439 | CPR_0090 | - | 10 Lys tRNA |
117671 | 119192 | + | 1522 | 110801439 | CPR_r13 | - | 16S ribosomal RNA |
119373 | 122280 | + | 2908 | 110801439 | CPR_r14 | - | 23S ribosomal RNA |
122330 | 122456 | + | 127 | 110801439 | CPR_r15 | - | 5S ribosomal RNA |
122457 | 122531 | + | 75 | 110801439 | CPR_0095 | - | 07 Asn tRNA |
233318 | 234839 | + | 1522 | 110801439 | CPR_r16 | - | 16S ribosomal RNA |
235020 | 237927 | + | 2908 | 110801439 | CPR_r17 | - | 23S ribosomal RNA |
238042 | 238168 | + | 127 | 110801439 | CPR_r18 | - | 5S ribosomal RNA |
238171 | 238246 | + | 76 | 110801439 | CPR_0191 | - | 17 Phe tRNA |
282349 | 282424 | - | 76 | 110801439 | CPR_0228 | - | 16 Met tRNA |
304835 | 306356 | + | 1522 | 110801439 | CPR_r19 | - | 16S ribosomal RNA |
306537 | 309444 | + | 2908 | 110801439 | CPR_r20 | - | 23S ribosomal RNA |
309494 | 309620 | + | 127 | 110801439 | CPR_r21 | - | 5S ribosomal RNA |
309623 | 309698 | + | 76 | 110801439 | CPR_0250 | - | 17 Phe tRNA |
323069 | 323144 | - | 76 | 110801439 | CPR_0263 | - | 03 Pro tRNA |
562274 | 562349 | + | 76 | 110801439 | CPR_0473 | - | 16 Met tRNA |
661048 | 662569 | + | 1522 | 110801439 | CPR_r22 | - | 16S ribosomal RNA |
662750 | 665657 | + | 2908 | 110801439 | CPR_r23 | - | 23S ribosomal RNA |
665772 | 665898 | + | 127 | 110801439 | CPR_r24 | - | 5S ribosomal RNA |
665896 | 665970 | + | 75 | 110801439 | CPR_0559 | - | 04 Glu tRNA |
799831 | 799919 | - | 89 | 110801439 | CPR_0677 | - | 15 Leu tRNA |
1544138 | 1544224 | - | 87 | 110801439 | CPR_1372 | - | 15 Leu tRNA |
2025512 | 2025602 | + | 91 | 110801439 | CPR_1834 | - | Sec tRNA |
2063530 | 2063604 | - | 75 | 110801439 | CPR_1864 | - | 19 Cys tRNA |
2063610 | 2063683 | - | 74 | 110801439 | CPR_1865 | - | 01 Gly tRNA |
2063687 | 2063761 | - | 75 | 110801439 | CPR_1866 | - | 01 Gly tRNA |
2063767 | 2063842 | - | 76 | 110801439 | CPR_1867 | - | 17 Phe tRNA |
2163759 | 2163844 | - | 86 | 110801439 | CPR_1958 | - | 15 Leu tRNA |
2360915 | 2360990 | - | 76 | 110801439 | CPR_2129 | - | 20 Trp tRNA |
2361019 | 2361094 | - | 76 | 110801439 | CPR_2130 | - | 20 Trp tRNA |
2380748 | 2380833 | - | 86 | 110801439 | CPR_2146 | - | 18 Tyr tRNA |
2380839 | 2380914 | - | 76 | 110801439 | CPR_2147 | - | 12 Thr tRNA |
2380940 | 2381025 | - | 86 | 110801439 | CPR_2148 | - | 18 Tyr tRNA |
2381031 | 2381106 | - | 76 | 110801439 | CPR_2149 | - | 12 Thr tRNA |
2381125 | 2381200 | - | 76 | 110801439 | CPR_2150 | - | 13 Val tRNA |
2381205 | 2381290 | - | 86 | 110801439 | CPR_2151 | - | 18 Tyr tRNA |
2381296 | 2381371 | - | 76 | 110801439 | CPR_2152 | - | 12 Thr tRNA |
2441882 | 2441956 | - | 75 | 110801439 | CPR_2211 | - | 07 Asn tRNA |
2442008 | 2444914 | - | 2907 | 110801439 | CPR_r25 | - | 23S ribosomal RNA |
2445015 | 2445091 | - | 77 | 110801439 | CPR_2212 | - | 14 Ile tRNA |
2445097 | 2445172 | - | 76 | 110801439 | CPR_2213 | - | 02 Ala tRNA |
2445329 | 2446850 | - | 1522 | 110801439 | CPR_r26 | - | 16S ribosomal RNA |
2450271 | 2450347 | - | 77 | 110801439 | CPR_2217 | - | 11 Arg tRNA |
2450396 | 2450469 | - | 74 | 110801439 | CPR_2218 | - | 01 Gly tRNA |
2450473 | 2450547 | - | 75 | 110801439 | CPR_2219 | - | 01 Gly tRNA |
2450571 | 2450654 | - | 84 | 110801439 | CPR_2220 | - | 15 Leu tRNA |
2450665 | 2450740 | - | 76 | 110801439 | CPR_2221 | - | 10 Lys tRNA |
2450748 | 2450822 | - | 75 | 110801439 | CPR_2222 | - | 05 Gln tRNA |
2450828 | 2450903 | - | 76 | 110801439 | CPR_2223 | - | 09 His tRNA |
2450908 | 2450984 | - | 77 | 110801439 | CPR_2224 | - | 11 Arg tRNA |
2451020 | 2451093 | - | 74 | 110801439 | CPR_2225 | - | 01 Gly tRNA |
2451098 | 2451173 | - | 76 | 110801439 | CPR_2226 | - | 03 Pro tRNA |
2451179 | 2451255 | - | 77 | 110801439 | CPR_2227 | - | 11 Arg tRNA |
2451331 | 2451404 | - | 74 | 110801439 | CPR_2228 | - | 01 Gly tRNA |
2451409 | 2451483 | - | 75 | 110801439 | CPR_2229 | - | 01 Gly tRNA |
2451507 | 2451590 | - | 84 | 110801439 | CPR_2230 | - | 15 Leu tRNA |
2451601 | 2451676 | - | 76 | 110801439 | CPR_2231 | - | 10 Lys tRNA |
2451696 | 2451771 | - | 76 | 110801439 | CPR_2232 | - | 10 Lys tRNA |
2451778 | 2451852 | - | 75 | 110801439 | CPR_2233 | - | 05 Gln tRNA |
2451856 | 2451931 | - | 76 | 110801439 | CPR_2234 | - | 09 His tRNA |
2451936 | 2452012 | - | 77 | 110801439 | CPR_2235 | - | 11 Arg tRNA |
2452092 | 2452166 | - | 75 | 110801439 | CPR_2236 | - | 01 Gly tRNA |
2452171 | 2452245 | - | 75 | 110801439 | CPR_2237 | - | 03 Pro tRNA |
2532078 | 2532153 | - | 76 | 110801439 | CPR_2305 | - | 10 Lys tRNA |
2532198 | 2532271 | - | 74 | 110801439 | CPR_2306 | - | 01 Gly tRNA |
2532336 | 2532410 | - | 75 | 110801439 | CPR_2307 | - | 05 Gln tRNA |
2532414 | 2532490 | - | 77 | 110801439 | CPR_2308 | - | 11 Arg tRNA |
2534954 | 2535029 | - | 76 | 110801439 | CPR_2312 | - | 10 Lys tRNA |
2535048 | 2535121 | - | 74 | 110801439 | CPR_2313 | - | 01 Gly tRNA |
2535127 | 2535201 | - | 75 | 110801439 | CPR_2314 | - | 01 Gly tRNA |
2535219 | 2535292 | - | 74 | 110801439 | CPR_2315 | - | 01 Gly tRNA |
2535298 | 2535381 | - | 84 | 110801439 | CPR_2316 | - | 15 Leu tRNA |
2636785 | 2636860 | - | 76 | 110801439 | CPR_2417 | - | 12 Thr tRNA |
2669636 | 2669710 | - | 75 | 110801439 | CPR_2454 | - | 19 Cys tRNA |
2669715 | 2669790 | - | 76 | 110801439 | CPR_2455 | - | 17 Phe tRNA |
2672081 | 2672202 | - | 122 | 110801439 | CPR_r27 | - | 5S ribosomal RNA |
2672204 | 2672278 | - | 75 | 110801439 | CPR_2458 | - | 07 Asn tRNA |
2672277 | 2672403 | - | 127 | 110801439 | CPR_r28 | - | 5S ribosomal RNA |
2672450 | 2675356 | - | 2907 | 110801439 | CPR_r29 | - | 23S ribosomal RNA |
2675457 | 2675533 | - | 77 | 110801439 | CPR_2459 | - | 14 Ile tRNA |
2675539 | 2675614 | - | 76 | 110801439 | CPR_2460 | - | 02 Ala tRNA |
2675775 | 2677291 | - | 1517 | 110801439 | CPR_r30 | - | 16S ribosomal RNA |
2685021 | 2685095 | - | 75 | 110801439 | CPR_2466 | - | 07 Asn tRNA |
2698146 | 2698234 | - | 89 | 110801439 | CPR_2476 | - | 15 Leu tRNA |
2698251 | 2698327 | - | 77 | 110801439 | CPR_2477 | - | 16 Met tRNA |
2698331 | 2698406 | - | 76 | 110801439 | CPR_2478 | - | 16 Met tRNA |
2698414 | 2698502 | - | 89 | 110801439 | CPR_2479 | - | 15 Leu tRNA |
2698519 | 2698595 | - | 77 | 110801439 | CPR_2480 | - | 16 Met tRNA |
2698599 | 2698674 | - | 76 | 110801439 | CPR_2481 | - | 16 Met tRNA |
2698681 | 2698769 | - | 89 | 110801439 | CPR_2482 | - | 15 Leu tRNA |
2858655 | 2858730 | - | 76 | 110801439 | CPR_2624 | - | 12 Thr tRNA |
2858734 | 2858810 | - | 77 | 110801439 | CPR_2625 | - | 06 Asp tRNA |
2858822 | 2858897 | - | 76 | 110801439 | CPR_2626 | - | 13 Val tRNA |
2858905 | 2858979 | - | 75 | 110801439 | CPR_2627 | - | 04 Glu tRNA |
2858985 | 2859061 | - | 77 | 110801439 | CPR_2628 | - | 06 Asp tRNA |
2859076 | 2859151 | - | 76 | 110801439 | CPR_2629 | - | 13 Val tRNA |
2859158 | 2859232 | - | 75 | 110801439 | CPR_2630 | - | 04 Glu tRNA |
2859240 | 2859316 | - | 77 | 110801439 | CPR_2631 | - | 06 Asp tRNA |
2859330 | 2859405 | - | 76 | 110801439 | CPR_2632 | - | 13 Val tRNA |
2859410 | 2859484 | - | 75 | 110801439 | CPR_2633 | - | 04 Glu tRNA |