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Геном прокариот/Материалы:NC 008346

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   LOCUS       NC_008346            2936195 bp    DNA     circular BCT 15-SEP-2006
   DEFINITION  Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete
               genome.
   ACCESSION   NC_008346
   VERSION     NC_008346.1  GI:114565576
   KEYWORDS    .
   SOURCE      Syntrophomonas wolfei subsp. wolfei str. Goettingen
     ORGANISM  Syntrophomonas wolfei subsp. wolfei str. Goettingen
               Bacteria; Firmicutes; Clostridia; Clostridiales;
               Syntrophomonadaceae; Syntrophomonas.
   REFERENCE   1  (bases 1 to 2936195)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R.,
               McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J.,
               Sieber,J., Stams,A.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Syntrophomonas wolfei subsp. wolfei str.
               Goettingen
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2936195)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2936195)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R.,
               McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J.,
               Sieber,J., Stams,A.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000448.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634478
               Source DNA and bacteria available from Michael J. McInerney
               (mcinerney@out.edu)
               Bacteria also available from DSMZ: DSM 2245B
               Contacts: Michael J. McInerney (mcinerney@out.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
14133 14222 + 90 114565576 Swol_R0001 - 08 Ser tRNA
14345 14438 + 94 114565576 Swol_R0002 - 08 Ser tRNA
14445 14521 + 77 114565576 Swol_R0003 - 11 Arg tRNA
18046 18122 + 77 114565576 Swol_R0004 - 11 Arg tRNA
18610 18704 + 95 114565576 Swol_R0005 - 08 Ser tRNA
22691 22786 + 96 114565576 Swol_R0006 - 08 Ser tRNA
35872 35988 + 117 114565576 Swol_R0007 - SRP RNA; RNA component of signal recognition particle
43738 45267 + 1530 114565576 Swol_R0008 - 16S ribosomal RNA
45511 45587 + 77 114565576 Swol_R0009 - 14 Ile tRNA
45777 45852 + 76 114565576 Swol_R0010 - 02 Ala tRNA
45990 49518 + 3529 114565576 Swol_R0011 - 23S ribosomal RNA
49574 49687 + 114 114565576 Swol_R0012 - 5S ribosomal RNA
49802 49910 + 109 114565576 Swol_R0013 - 5S ribosomal RNA
50025 50133 + 109 114565576 Swol_R0014 - 5S ribosomal RNA
325818 326166 + 349 114565576 Swol_R0067 - tmRNA
417882 419570 + 1689 114565576 Swol_R0015 - 16S ribosomal RNA
419845 422932 + 3088 114565576 Swol_R0016 - 23S ribosomal RNA
422988 423101 + 114 114565576 Swol_R0017 - 5S ribosomal RNA
423216 423324 + 109 114565576 Swol_R0018 - 5S ribosomal RNA
423439 423547 + 109 114565576 Swol_R0019 - 5S ribosomal RNA
741640 742011 - 372 114565576 Swol_R0068 - RNA component of RNaseP
1053401 1054902 + 1502 114565576 Swol_R0020 - 16S ribosomal RNA
1055296 1058555 + 3260 114565576 Swol_R0021 - 23S ribosomal RNA
1058611 1058724 + 114 114565576 Swol_R0022 - 5S ribosomal RNA
1058834 1058941 + 108 114565576 Swol_R0023 - 5S ribosomal RNA
1059055 1059163 + 109 114565576 Swol_R0024 - 5S ribosomal RNA
1059277 1059385 + 109 114565576 Swol_R0025 - 5S ribosomal RNA
1059500 1059607 + 108 114565576 Swol_R0026 - 5S ribosomal RNA
1059721 1059829 + 109 114565576 Swol_R0027 - 5S ribosomal RNA
1059943 1060051 + 109 114565576 Swol_R0028 - 5S ribosomal RNA
1240598 1240672 - 75 114565576 Swol_R0029 - 13 Val tRNA
1282600 1282675 - 76 114565576 Swol_R0030 - 04 Glu tRNA
1282682 1282755 - 74 114565576 Swol_R0031 - 05 Gln tRNA
1301163 1301237 - 75 114565576 Swol_R0032 - 11 Arg tRNA
1337977 1338052 - 76 114565576 Swol_R0033 - 20 Trp tRNA
1398635 1398711 - 77 114565576 Swol_R0034 - 10 Lys tRNA
1408772 1408858 + 87 114565576 Swol_R0035 - 15 Leu tRNA
1499295 1499383 - 89 114565576 Swol_R0036 - 15 Leu tRNA
1499689 1499764 - 76 114565576 Swol_R0037 - 19 Cys tRNA
1499880 1499954 - 75 114565576 Swol_R0038 - 01 Gly tRNA
1499963 1500038 - 76 114565576 Swol_R0039 - 17 Phe tRNA
1500072 1500147 - 76 114565576 Swol_R0040 - 06 Asp tRNA
1505611 1505690 - 80 114565576 Swol_R0041 - 03 Pro tRNA
1521253 1521330 - 78 114565576 Swol_R0042 - 03 Pro tRNA
1724781 1724856 - 76 114565576 Swol_R0043 - 13 Val tRNA
1724863 1724937 - 75 114565576 Swol_R0044 - 04 Glu tRNA
1725058 1725133 - 76 114565576 Swol_R0045 - 16 Met tRNA
1725266 1725340 - 75 114565576 Swol_R0046 - 07 Asn tRNA
1824213 1824288 + 76 114565576 Swol_R0047 - 02 Ala tRNA
1891761 1891837 + 77 114565576 Swol_R0048 - 03 Pro tRNA
1987454 1987529 - 76 114565576 Swol_R0049 - 10 Lys tRNA
1987541 1987615 - 75 114565576 Swol_R0050 - 05 Gln tRNA
1987663 1987739 - 77 114565576 Swol_R0051 - 09 His tRNA
1987764 1987840 - 77 114565576 Swol_R0052 - 11 Arg tRNA
1987848 1987921 - 74 114565576 Swol_R0053 - 01 Gly tRNA
2011519 2011603 + 85 114565576 Swol_R0054 - 15 Leu tRNA
2196652 2196727 + 76 114565576 Swol_R0055 - 02 Ala tRNA
2305544 2305628 - 85 114565576 Swol_R0056 - 15 Leu tRNA
2315677 2315761 + 85 114565576 Swol_R0057 - 15 Leu tRNA
2393889 2393965 - 77 114565576 Swol_R0058 - 03 Pro tRNA
2618758 2618832 - 75 114565576 Swol_R0059 - 12 Thr tRNA
2683333 2683409 - 77 114565576 Swol_R0060 - 16 Met tRNA
2683413 2683488 - 76 114565576 Swol_R0061 - 12 Thr tRNA
2683761 2683836 - 76 114565576 Swol_R0062 - 16 Met tRNA
2683844 2683928 - 85 114565576 Swol_R0063 - 18 Tyr tRNA
2683941 2684016 - 76 114565576 Swol_R0064 - 12 Thr tRNA
2806446 2806520 - 75 114565576 Swol_R0065 - 01 Gly tRNA
2890638 2890712 - 75 114565576 Swol_R0066 - 13 Val tRNA