Геном прокариот/Материалы:NC 008347
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Базовый уровень статей |
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LOCUS NC_008347 3368780 bp DNA circular BCT 16-SEP-2006
DEFINITION Maricaulis maris MCS10, complete genome.
ACCESSION NC_008347
VERSION NC_008347.1 GI:114568554
KEYWORDS .
SOURCE Maricaulis maris MCS10
ORGANISM Maricaulis maris MCS10
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
Hyphomonadaceae; Maricaulis.
REFERENCE 1 (bases 1 to 3368780)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Maricaulis maris MCS10
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3368780)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3368780)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000449.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001624
Source DNA and bacteria available from Craig Stephens
(cstephens@csu.edu)
Contacts: Craig Stephens (cstephens@csu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 47339 | 47414 | + | 76 | 114568554 | Mmar10_R0001 | - | 12 Thr tRNA |
| 55321 | 55396 | + | 76 | 114568554 | Mmar10_R0002 | - | 02 Ala tRNA |
| 64184 | 64260 | - | 77 | 114568554 | Mmar10_R0003 | - | 11 Arg tRNA |
| 104892 | 104967 | + | 76 | 114568554 | Mmar10_R0004 | - | 02 Ala tRNA |
| 115309 | 115395 | - | 87 | 114568554 | Mmar10_R0005 | - | 15 Leu tRNA |
| 157822 | 157911 | + | 90 | 114568554 | Mmar10_R0006 | - | 08 Ser tRNA |
| 512364 | 512464 | - | 101 | 114568554 | Mmar10_R0007 | - | SRP RNA; RNA component of signal recognition particle |
| 540399 | 540475 | + | 77 | 114568554 | Mmar10_R0008 | - | 11 Arg tRNA |
| 584429 | 584502 | + | 74 | 114568554 | Mmar10_R0009 | - | 01 Gly tRNA |
| 815140 | 815216 | + | 77 | 114568554 | Mmar10_R0010 | - | 16 Met tRNA |
| 962062 | 962138 | - | 77 | 114568554 | Mmar10_R0011 | - | 03 Pro tRNA |
| 962376 | 962450 | + | 75 | 114568554 | Mmar10_R0012 | - | 05 Gln tRNA |
| 1065511 | 1065585 | - | 75 | 114568554 | Mmar10_R0013 | - | 13 Val tRNA |
| 1093532 | 1093607 | - | 76 | 114568554 | Mmar10_R0014 | - | 07 Asn tRNA |
| 1096865 | 1096938 | - | 74 | 114568554 | Mmar10_R0015 | - | 19 Cys tRNA |
| 1149523 | 1149609 | + | 87 | 114568554 | Mmar10_R0016 | - | 15 Leu tRNA |
| 1183394 | 1184853 | + | 1460 | 114568554 | Mmar10_R0017 | - | 16S ribosomal RNA |
| 1185062 | 1185138 | + | 77 | 114568554 | Mmar10_R0018 | - | 14 Ile tRNA |
| 1185183 | 1185258 | + | 76 | 114568554 | Mmar10_R0019 | - | 02 Ala tRNA |
| 1185546 | 1188292 | + | 2747 | 114568554 | Mmar10_R0020 | - | 23S ribosomal RNA |
| 1188374 | 1188488 | + | 115 | 114568554 | Mmar10_R0021 | - | 5S ribosomal RNA |
| 1191990 | 1192066 | + | 77 | 114568554 | Mmar10_R0022 | - | 16 Met tRNA |
| 1233509 | 1233583 | - | 75 | 114568554 | Mmar10_R0023 | - | 12 Thr tRNA |
| 1239076 | 1239150 | + | 75 | 114568554 | Mmar10_R0024 | - | 17 Phe tRNA |
| 1464925 | 1465009 | + | 85 | 114568554 | Mmar10_R0025 | - | 15 Leu tRNA |
| 1474901 | 1474976 | + | 76 | 114568554 | Mmar10_R0026 | - | 13 Val tRNA |
| 1479116 | 1479192 | + | 77 | 114568554 | Mmar10_R0027 | - | 06 Asp tRNA |
| 1597298 | 1597385 | + | 88 | 114568554 | Mmar10_R0028 | - | 08 Ser tRNA |
| 1641946 | 1642022 | - | 77 | 114568554 | Mmar10_R0029 | - | 11 Arg tRNA |
| 1642438 | 1642514 | - | 77 | 114568554 | Mmar10_R0030 | - | 03 Pro tRNA |
| 1657083 | 1657157 | - | 75 | 114568554 | Mmar10_R0031 | - | 04 Glu tRNA |
| 1673952 | 1674029 | - | 78 | 114568554 | Mmar10_R0032 | - | 03 Pro tRNA |
| 1823339 | 1823429 | + | 91 | 114568554 | Mmar10_R0033 | - | 08 Ser tRNA |
| 1910144 | 1910230 | - | 87 | 114568554 | Mmar10_R0034 | - | 15 Leu tRNA |
| 1962629 | 1962704 | - | 76 | 114568554 | Mmar10_R0035 | - | 20 Trp tRNA |
| 1973447 | 1973520 | - | 74 | 114568554 | Mmar10_R0036 | - | 01 Gly tRNA |
| 1975486 | 1975571 | - | 86 | 114568554 | Mmar10_R0037 | - | 18 Tyr tRNA |
| 1987002 | 1987077 | + | 76 | 114568554 | Mmar10_R0038 | - | 12 Thr tRNA |
| 1992960 | 1993074 | - | 115 | 114568554 | Mmar10_R0039 | - | 5S ribosomal RNA |
| 1993156 | 1995902 | - | 2747 | 114568554 | Mmar10_R0040 | - | 23S ribosomal RNA |
| 1996190 | 1996265 | - | 76 | 114568554 | Mmar10_R0041 | - | 02 Ala tRNA |
| 1996310 | 1996386 | - | 77 | 114568554 | Mmar10_R0042 | - | 14 Ile tRNA |
| 1996595 | 1998054 | - | 1460 | 114568554 | Mmar10_R0043 | - | 16S ribosomal RNA |
| 2016191 | 2016267 | - | 77 | 114568554 | Mmar10_R0044 | - | 09 His tRNA |
| 2036309 | 2036384 | - | 76 | 114568554 | Mmar10_R0045 | - | 10 Lys tRNA |
| 2170920 | 2170995 | + | 76 | 114568554 | Mmar10_R0046 | - | 10 Lys tRNA |
| 2220825 | 2221138 | + | 314 | 114568554 | Mmar10_R0047 | - | tmRNA |
| 2271846 | 2272171 | - | 326 | 114568554 | Mmar10_R0048 | - | RNA component of RNaseP |
| 2313384 | 2313460 | - | 77 | 114568554 | Mmar10_R0049 | - | 16 Met tRNA |
| 2511362 | 2511438 | + | 77 | 114568554 | Mmar10_R0050 | - | 11 Arg tRNA |
| 2559640 | 2559725 | - | 86 | 114568554 | Mmar10_R0051 | - | 15 Leu tRNA |
| 2731514 | 2731588 | + | 75 | 114568554 | Mmar10_R0052 | - | 13 Val tRNA |
| 3072404 | 3072493 | - | 90 | 114568554 | Mmar10_R0053 | - | 08 Ser tRNA |
| 3221418 | 3221492 | - | 75 | 114568554 | Mmar10_R0054 | - | 01 Gly tRNA |