Геном прокариот/Материалы:NC 008390

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008390            3556545 bp    DNA     circular BCT 27-SEP-2006
   DEFINITION  Burkholderia cepacia AMMD chromosome 1, complete sequence.
   ACCESSION   NC_008390
   VERSION     NC_008390.1  GI:115350056
   KEYWORDS    .
   SOURCE      Burkholderia cepacia AMMD
     ORGANISM  Burkholderia cepacia AMMD
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3556545)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
               Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Burkholderia cepacia AMMD
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3556545)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3556545)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
               Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000440.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000046
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11400	11485	-	86	115350056	Bamb_R0001	-	5S ribosomal RNA
11637	14518	-	2882	115350056	Bamb_R0002	-	23S ribosomal RNA
14918	16443	-	1526	115350056	Bamb_R0003	-	16S ribosomal RNA
22022	22098	+	77	115350056	Bamb_R0004	-	^{13 Val tRNA}
165011	165086	+	76	115350056	Bamb_R0005	-	^{11 Arg tRNA}
239177	239252	+	76	115350056	Bamb_R0006	-	^{02 Ala tRNA}
290626	292151	+	1526	115350056	Bamb_R0007	-	16S ribosomal RNA
292215	292291	+	77	115350056	Bamb_R0008	-	^{14 Ile tRNA}
292334	292409	+	76	115350056	Bamb_R0009	-	^{02 Ala tRNA}
292700	295581	+	2882	115350056	Bamb_R0010	-	23S ribosomal RNA
295763	295875	+	113	115350056	Bamb_R0011	-	5S ribosomal RNA
298069	298154	+	86	115350056	Bamb_R0012	-	^{18 Tyr tRNA}
298198	298271	+	74	115350056	Bamb_R0013	-	^{01 Gly tRNA}
298297	298371	+	75	115350056	Bamb_R0014	-	^{12 Thr tRNA}
299686	299761	+	76	115350056	Bamb_R0015	-	^{20 Trp tRNA}
403358	403433	+	76	115350056	Bamb_R0016	-	^{12 Thr tRNA}
502497	504022	+	1526	115350056	Bamb_R0017	-	16S ribosomal RNA
504085	504161	+	77	115350056	Bamb_R0018	-	^{14 Ile tRNA}
504247	504322	+	76	115350056	Bamb_R0019	-	^{02 Ala tRNA}
504612	507493	+	2882	115350056	Bamb_R0020	-	23S ribosomal RNA
507677	507789	+	113	115350056	Bamb_R0021	-	5S ribosomal RNA
547322	547398	-	77	115350056	Bamb_R0022	-	^{03 Pro tRNA}
644675	644978	+	304	115350056	Bamb_R0023	-	RNA component of RNaseP
755874	755950	-	77	115350056	Bamb_R0024	-	^{10 Lys tRNA}
883412	883486	-	75	115350056	Bamb_R0025	-	^{01 Gly tRNA}
928024	928114	+	91	115350056	Bamb_R0026	-	^{08 Ser tRNA}
939995	940082	-	88	115350056	Bamb_R0027	-	^{08 Ser tRNA}
947488	947564	-	77	115350056	Bamb_R0028	-	^{11 Arg tRNA}
947626	947702	-	77	115350056	Bamb_R0029	-	^{11 Arg tRNA}
947769	947845	-	77	115350056	Bamb_R0030	-	^{11 Arg tRNA}
961957	962032	-	76	115350056	Bamb_R0031	-	^{12 Thr tRNA}
1003499	1003787	+	289	115350056	Bamb_R0032	-	tmRNA
1064508	1064583	-	76	115350056	Bamb_R0033	-	^{07 Asn tRNA}
1064655	1064730	-	76	115350056	Bamb_R0034	-	^{07 Asn tRNA}
1110837	1110912	+	76	115350056	Bamb_R0035	-	^{01 Gly tRNA}
1110965	1111040	+	76	115350056	Bamb_R0036	-	^{01 Gly tRNA}
1111091	1111166	+	76	115350056	Bamb_R0037	-	^{01 Gly tRNA}
1111267	1111340	+	74	115350056	Bamb_R0038	-	^{19 Cys tRNA}
1310921	1310997	-	77	115350056	Bamb_R0039	-	^{03 Pro tRNA}
1320315	1320391	+	77	115350056	Bamb_R0040	-	^{11 Arg tRNA}
1492772	1492848	+	77	115350056	Bamb_R0041	-	^{13 Val tRNA}
1504737	1504813	+	77	115350056	Bamb_R0042	-	^{03 Pro tRNA}
1573441	1573527	-	87	115350056	Bamb_R0043	-	^{15 Leu tRNA}
1573734	1573820	-	87	115350056	Bamb_R0044	-	^{15 Leu tRNA}
1595642	1595728	-	87	115350056	Bamb_R0045	-	^{15 Leu tRNA}
1608538	1608614	-	77	115350056	Bamb_R0046	-	^{16 Met tRNA}
1616792	1616867	+	76	115350056	Bamb_R0047	-	^{09 His tRNA}
1952818	1952922	-	105	115350056	Bamb_R0048	-	SRP RNA; RNA component of signal recognition particle
2100921	2100997	-	77	115350056	Bamb_R0049	-	^{06 Asp tRNA}
2101021	2101096	-	76	115350056	Bamb_R0050	-	^{13 Val tRNA}
2116714	2116800	-	87	115350056	Bamb_R0051	-	^{15 Leu tRNA}
2290767	2290843	-	77	115350056	Bamb_R0052	-	^{06 Asp tRNA}
2290917	2290992	-	76	115350056	Bamb_R0053	-	^{04 Glu tRNA}
2291058	2291134	-	77	115350056	Bamb_R0054	-	^{06 Asp tRNA}
2291215	2291290	-	76	115350056	Bamb_R0055	-	^{04 Glu tRNA}
2291354	2291430	-	77	115350056	Bamb_R0056	-	^{06 Asp tRNA}
2291510	2291585	-	76	115350056	Bamb_R0057	-	^{04 Glu tRNA}
2291725	2291800	-	76	115350056	Bamb_R0058	-	^{02 Ala tRNA}
2317993	2318086	-	94	115350056	Bamb_R0059	-	^{08 Ser tRNA}
2400267	2400343	-	77	115350056	Bamb_R0060	-	^{16 Met tRNA}
2424859	2424933	+	75	115350056	Bamb_R0061	-	^{13 Val tRNA}
2452752	2452842	+	91	115350056	Bamb_R0062	-	^{08 Ser tRNA}
2487888	2487984	-	97	115350056	Bamb_R0063	-	5S ribosomal RNA
2488115	2490996	-	2882	115350056	Bamb_R0064	-	23S ribosomal RNA
2491287	2491362	-	76	115350056	Bamb_R0065	-	^{02 Ala tRNA}
2491405	2491481	-	77	115350056	Bamb_R0066	-	^{14 Ile tRNA}
2491545	2493070	-	1526	115350056	Bamb_R0067	-	16S ribosomal RNA
2524022	2524106	-	85	115350056	Bamb_R0068	-	^{15 Leu tRNA}
2649022	2649096	+	75	115350056	Bamb_R0069	-	^{11 Arg tRNA}
2665358	2665434	+	77	115350056	Bamb_R0070	-	^{16 Met tRNA}
2678218	2678294	+	77	115350056	Bamb_R0071	-	^{16 Met tRNA}
2784645	2784729	+	85	115350056	Bamb_R0072	-	^{15 Leu tRNA}
2978457	2978533	+	77	115350056	Bamb_R0073	-	^{16 Met tRNA}
3156370	3156446	+	77	115350056	Bamb_R0074	-	^{05 Gln tRNA}
3509379	3509454	-	76	115350056	Bamb_R0075	-	^{17 Phe tRNA}
3526870	3526945	+	76	115350056	Bamb_R0076	-	^{10 Lys tRNA}