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Геном прокариот/Материалы:NC 008541

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   LOCUS       NC_008541            4698945 bp    DNA     circular BCT 25-OCT-2006
   DEFINITION  Arthrobacter sp. FB24 chromosome 1, complete sequence.
   ACCESSION   NC_008541
   VERSION     NC_008541.1  GI:116668568
   KEYWORDS    .
   SOURCE      Arthrobacter sp. FB24
     ORGANISM  Arthrobacter sp. FB24
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Micrococcineae; Micrococcaceae; Arthrobacter.
   REFERENCE   1  (bases 1 to 4698945)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Arthrobacter sp. FB24
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4698945)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4698945)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000454.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634492
               Source DNA and bacteria available from Cindy H. Nakatsu
               (cnakatsu@purdue.edu)
               Contacts: Cindy H. Nakatsu (cnakatsu@purdue.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               Additional notes: There is an uncertain number of G/C in
               homopolimer repeats in the regions 3501583-3501612,
               3732178-3732195.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
11842 11915 + 74 116668568 Arth_R0001 - 14 Ile tRNA
12163 12238 + 76 116668568 Arth_R0002 - 02 Ala tRNA
33132 33214 + 83 116668568 Arth_R0003 - 15 Leu tRNA
76568 76640 + 73 116668568 Arth_R0004 - 10 Lys tRNA
218923 218995 + 73 116668568 Arth_R0005 - 10 Lys tRNA
421350 421422 + 73 116668568 Arth_R0006 - 04 Glu tRNA
421519 421592 + 74 116668568 Arth_R0007 - 06 Asp tRNA
421641 421716 + 76 116668568 Arth_R0008 - 17 Phe tRNA
595991 596080 - 90 116668568 Arth_R0009 - SRP RNA; RNA component of signal recognition particle
596911 596995 + 85 116668568 Arth_R0010 - 08 Ser tRNA
687247 687336 - 90 116668568 Arth_R0011 - 08 Ser tRNA
710671 710744 - 74 116668568 Arth_R0012 - 11 Arg tRNA
722327 722414 - 88 116668568 Arth_R0013 - 08 Ser tRNA
733106 733196 - 91 116668568 Arth_R0014 - 08 Ser tRNA
760748 760820 - 73 116668568 Arth_R0015 - 12 Thr tRNA
792344 793860 + 1517 116668568 Arth_R0016 - 16S ribosomal RNA
794378 797515 + 3138 116668568 Arth_R0017 - 23S ribosomal RNA
797736 797852 + 117 116668568 Arth_R0018 - 5S ribosomal RNA
816148 816224 + 77 116668568 Arth_R0019 - 12 Thr tRNA
877148 877220 - 73 116668568 Arth_R0020 - 11 Arg tRNA
1145794 1147310 + 1517 116668568 Arth_R0021 - 16S ribosomal RNA
1147827 1150964 + 3138 116668568 Arth_R0022 - 23S ribosomal RNA
1151187 1151303 + 117 116668568 Arth_R0023 - 5S ribosomal RNA
1251644 1251717 + 74 116668568 Arth_R0024 - 15 Leu tRNA
1326164 1326235 + 72 116668568 Arth_R0025 - 05 Gln tRNA
1502820 1502892 + 73 116668568 Arth_R0026 - 07 Asn tRNA
1503019 1503091 + 73 116668568 Arth_R0027 - 07 Asn tRNA
1509118 1509191 + 74 116668568 Arth_R0028 - 16 Met tRNA
1678840 1680356 + 1517 116668568 Arth_R0029 - 16S ribosomal RNA
1680874 1684011 + 3138 116668568 Arth_R0030 - 23S ribosomal RNA
1684234 1684350 + 117 116668568 Arth_R0031 - 5S ribosomal RNA
1714644 1714720 + 77 116668568 Arth_R0032 - 03 Pro tRNA
1862990 1863064 - 75 116668568 Arth_R0033 - 13 Val tRNA
1863103 1863175 - 73 116668568 Arth_R0034 - 01 Gly tRNA
1863231 1863305 - 75 116668568 Arth_R0035 - 13 Val tRNA
1863348 1863418 - 71 116668568 Arth_R0036 - 19 Cys tRNA
1863465 1863537 - 73 116668568 Arth_R0037 - 01 Gly tRNA
1863854 1863928 + 75 116668568 Arth_R0038 - 13 Val tRNA
1892239 1892320 + 82 116668568 Arth_R0039 - 15 Leu tRNA
2436509 2436594 - 86 116668568 Arth_R0040 - 15 Leu tRNA
2670834 2670906 - 73 116668568 Arth_R0041 - 02 Ala tRNA
2671099 2671174 - 76 116668568 Arth_R0042 - 02 Ala tRNA
2701743 2701817 - 75 116668568 Arth_R0043 - 03 Pro tRNA
2701975 2702048 + 74 116668568 Arth_R0044 - 01 Gly tRNA
2715875 2715947 + 73 116668568 Arth_R0045 - 11 Arg tRNA
2731989 2732061 + 73 116668568 Arth_R0046 - 09 His tRNA
2735957 2736294 - 338 116668568 Arth_R0068 - RNA component of RNaseP
2756573 2756648 - 76 116668568 Arth_R0047 - 13 Val tRNA
2827052 2827127 - 76 116668568 Arth_R0048 - 04 Glu tRNA
2827255 2827326 - 72 116668568 Arth_R0049 - 05 Gln tRNA
2854533 2854608 + 76 116668568 Arth_R0050 - 10 Lys tRNA
2856320 2856401 + 82 116668568 Arth_R0051 - 15 Leu tRNA
2947636 2947708 + 73 116668568 Arth_R0052 - 11 Arg tRNA
2985134 2985502 - 369 116668568 Arth_R0069 - tmRNA
3091249 3091325 - 77 116668568 Arth_R0053 - 16 Met tRNA
3091514 3091587 - 74 116668568 Arth_R0054 - 16 Met tRNA
3217415 3217490 - 76 116668568 Arth_R0055 - 02 Ala tRNA
3364585 3364657 - 73 116668568 Arth_R0056 - 20 Trp tRNA
3416184 3416260 - 77 116668568 Arth_R0057 - 16 Met tRNA
3416322 3416393 - 72 116668568 Arth_R0058 - 12 Thr tRNA
3444091 3444175 - 85 116668568 Arth_R0059 - 18 Tyr tRNA
3828097 3828173 + 77 116668568 Arth_R0060 - 03 Pro tRNA
4364506 4364579 + 74 116668568 Arth_R0061 - 01 Gly tRNA
4414904 4415020 - 117 116668568 Arth_R0062 - 5S ribosomal RNA
4415241 4418378 - 3138 116668568 Arth_R0063 - 23S ribosomal RNA
4418896 4420412 - 1517 116668568 Arth_R0064 - 16S ribosomal RNA
4425408 4425524 - 117 116668568 Arth_R0065 - 5S ribosomal RNA
4425746 4428883 - 3138 116668568 Arth_R0066 - 23S ribosomal RNA
4429401 4430917 - 1517 116668568 Arth_R0067 - 16S ribosomal RNA