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Геном прокариот/Материалы:NC 008542

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   LOCUS       NC_008542            3483902 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
   ACCESSION   NC_008542
   VERSION     NC_008542.1  GI:116688024
   KEYWORDS    .
   SOURCE      Burkholderia cenocepacia HI2424
     ORGANISM  Burkholderia cenocepacia HI2424
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3483902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., LiPuma,J.J., Gonzalez,C.F.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Burkholderia cenocepacia
               HI2424
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3483902)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (26-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3483902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., LiPuma,J.J., Gonzalez,C.F.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000458.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3635681
               Source DNA and bacteria available from James M. Tiedje
               (tiedjej@msu.edu)
               Contacts: James M. Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
10006 10122 - 117 116688024 Bcen2424_R0001 - 5S ribosomal RNA
10273 13154 - 2882 116688024 Bcen2424_R0002 - 23S ribosomal RNA
13544 15079 - 1536 116688024 Bcen2424_R0003 - 16S ribosomal RNA
21288 21364 + 77 116688024 Bcen2424_R0004 - 13 Val tRNA
168314 168389 + 76 116688024 Bcen2424_R0005 - 11 Arg tRNA
334605 334680 + 76 116688024 Bcen2424_R0006 - 02 Ala tRNA
376967 378502 + 1536 116688024 Bcen2424_R0007 - 16S ribosomal RNA
378563 378639 + 77 116688024 Bcen2424_R0008 - 14 Ile tRNA
378681 378756 + 76 116688024 Bcen2424_R0009 - 02 Ala tRNA
379032 381913 + 2882 116688024 Bcen2424_R0010 - 23S ribosomal RNA
382062 382178 + 117 116688024 Bcen2424_R0010a - 5S ribosomal RNA
384229 384314 + 86 116688024 Bcen2424_R0011 - 18 Tyr tRNA
384358 384431 + 74 116688024 Bcen2424_R0012 - 01 Gly tRNA
384454 384528 + 75 116688024 Bcen2424_R0013 - 12 Thr tRNA
385845 385920 + 76 116688024 Bcen2424_R0014 - 20 Trp tRNA
491047 491122 + 76 116688024 Bcen2424_R0015 - 12 Thr tRNA
606431 607966 + 1536 116688024 Bcen2424_R0016 - 16S ribosomal RNA
608027 608103 + 77 116688024 Bcen2424_R0017 - 14 Ile tRNA
608145 608220 + 76 116688024 Bcen2424_R0018 - 02 Ala tRNA
608496 611377 + 2882 116688024 Bcen2424_R0019 - 23S ribosomal RNA
611527 611643 + 117 116688024 Bcen2424_R0020 - 5S ribosomal RNA
652399 652475 - 77 116688024 Bcen2424_R0021 - 03 Pro tRNA
757513 757859 + 347 116688024 Bcen2424_R0022 - RNaseP RNA
900469 900545 - 77 116688024 Bcen2424_R0023 - 10 Lys tRNA
1027329 1027403 - 75 116688024 Bcen2424_R0024 - 01 Gly tRNA
1089752 1089842 + 91 116688024 Bcen2424_R0025 - 08 Ser tRNA
1101897 1101984 - 88 116688024 Bcen2424_R0026 - 08 Ser tRNA
1109308 1109384 - 77 116688024 Bcen2424_R0027 - 11 Arg tRNA
1109446 1109522 - 77 116688024 Bcen2424_R0028 - 11 Arg tRNA
1109589 1109665 - 77 116688024 Bcen2424_R0029 - 11 Arg tRNA
1119429 1119504 - 76 116688024 Bcen2424_R0030 - 12 Thr tRNA
1210435 1210510 - 76 116688024 Bcen2424_R0031 - 07 Asn tRNA
1210583 1210658 - 76 116688024 Bcen2424_R0032 - 07 Asn tRNA
1256651 1256726 + 76 116688024 Bcen2424_R0033 - 01 Gly tRNA
1256780 1256855 + 76 116688024 Bcen2424_R0034 - 01 Gly tRNA
1256907 1256982 + 76 116688024 Bcen2424_R0035 - 01 Gly tRNA
1257082 1257155 + 74 116688024 Bcen2424_R0036 - 19 Cys tRNA
1442747 1442823 - 77 116688024 Bcen2424_R0037 - 03 Pro tRNA
1452122 1452198 + 77 116688024 Bcen2424_R0038 - 11 Arg tRNA
1628443 1628519 + 77 116688024 Bcen2424_R0039 - 13 Val tRNA
1640213 1640289 + 77 116688024 Bcen2424_R0040 - 03 Pro tRNA
1709262 1709348 - 87 116688024 Bcen2424_R0041 - 15 Leu tRNA
1709611 1709697 - 87 116688024 Bcen2424_R0042 - 15 Leu tRNA
1710986 1711072 - 87 116688024 Bcen2424_R0043 - 15 Leu tRNA
1723860 1723936 - 77 116688024 Bcen2424_R0044 - 16 Met tRNA
1732090 1732165 + 76 116688024 Bcen2424_R0045 - 09 His tRNA
2030869 2030971 - 103 116688024 Bcen2424_R0046 - SRP RNA
2133954 2134030 - 77 116688024 Bcen2424_R0047 - 06 Asp tRNA
2134054 2134129 - 76 116688024 Bcen2424_R0048 - 13 Val tRNA
2149655 2149741 - 87 116688024 Bcen2424_R0049 - 15 Leu tRNA
2280766 2280842 - 77 116688024 Bcen2424_R0050 - 06 Asp tRNA
2280915 2280990 - 76 116688024 Bcen2424_R0051 - 04 Glu tRNA
2281055 2281131 - 77 116688024 Bcen2424_R0052 - 06 Asp tRNA
2281211 2281286 - 76 116688024 Bcen2424_R0053 - 04 Glu tRNA
2281350 2281426 - 77 116688024 Bcen2424_R0054 - 06 Asp tRNA
2281505 2281580 - 76 116688024 Bcen2424_R0055 - 04 Glu tRNA
2281718 2281793 - 76 116688024 Bcen2424_R0056 - 02 Ala tRNA
2303068 2303161 - 94 116688024 Bcen2424_R0057 - 08 Ser tRNA
2383732 2383808 - 77 116688024 Bcen2424_R0058 - 16 Met tRNA
2407982 2408056 + 75 116688024 Bcen2424_R0059 - 13 Val tRNA
2437929 2438019 + 91 116688024 Bcen2424_R0060 - 08 Ser tRNA
2468175 2468291 - 117 116688024 Bcen2424_R0061 - 5S ribosomal RNA
2468442 2471323 - 2882 116688024 Bcen2424_R0062 - 23S ribosomal RNA
2471613 2471688 - 76 116688024 Bcen2424_R0063 - 02 Ala tRNA
2471727 2471803 - 77 116688024 Bcen2424_R0064 - 14 Ile tRNA
2471865 2473400 - 1536 116688024 Bcen2424_R0065 - 16S ribosomal RNA
2504310 2504394 - 85 116688024 Bcen2424_R0066 - 15 Leu tRNA
2629592 2629666 + 75 116688024 Bcen2424_R0067 - 11 Arg tRNA
2648498 2648574 + 77 116688024 Bcen2424_R0068 - 16 Met tRNA
2749735 2749819 + 85 116688024 Bcen2424_R0069 - 15 Leu tRNA
2943658 2943734 + 77 116688024 Bcen2424_R0070 - 16 Met tRNA
3098788 3098864 + 77 116688024 Bcen2424_R0071 - 05 Gln tRNA
3434616 3434691 - 76 116688024 Bcen2424_R0072 - 17 Phe tRNA
3452163 3452238 + 76 116688024 Bcen2424_R0073 - 10 Lys tRNA