Геном прокариот/Материалы:NC 008554
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Базовый уровень статей |
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LOCUS NC_008554 4990251 bp DNA circular BCT 01-NOV-2006
DEFINITION Syntrophobacter fumaroxidans MPOB, complete genome.
ACCESSION NC_008554
VERSION NC_008554.1 GI:116747452
KEYWORDS .
SOURCE Syntrophobacter fumaroxidans MPOB
ORGANISM Syntrophobacter fumaroxidans MPOB
Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales;
Syntrophobacteraceae; Syntrophobacter.
REFERENCE 1 (bases 1 to 4990251)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Syntrophobacter fumaroxidans MPOB
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4990251)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4990251)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000478.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634477
Source DNA and bacteria available from Michael J. McInerney
(mcinerney@ou.edu)
Contacts: Michael J. McInerney (mcinerney@ou.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 2632 | 2708 | - | 77 | 116747452 | Sfum_R0001 | - | 16 Met tRNA |
| 97015 | 97089 | + | 75 | 116747452 | Sfum_R0002 | - | 19 Cys tRNA |
| 117774 | 117850 | - | 77 | 116747452 | Sfum_R0003 | - | 06 Asp tRNA |
| 117864 | 117939 | - | 76 | 116747452 | Sfum_R0004 | - | 13 Val tRNA |
| 124502 | 124588 | - | 87 | 116747452 | Sfum_R0005 | - | 15 Leu tRNA |
| 253670 | 253745 | + | 76 | 116747452 | Sfum_R0006 | - | 17 Phe tRNA |
| 391640 | 391715 | + | 76 | 116747452 | Sfum_R0007 | - | 02 Ala tRNA |
| 513785 | 513859 | + | 75 | 116747452 | Sfum_R0008 | - | 13 Val tRNA |
| 643671 | 643745 | - | 75 | 116747452 | Sfum_R0009 | - | 12 Thr tRNA |
| 727351 | 727444 | - | 94 | 116747452 | Sfum_R0010 | - | SRP RNA; RNA component of signal recognition particle |
| 818767 | 818843 | - | 77 | 116747452 | Sfum_R0011 | - | 20 Trp tRNA |
| 832021 | 832096 | + | 76 | 116747452 | Sfum_R0012 | - | 13 Val tRNA |
| 847128 | 848682 | + | 1555 | 116747452 | Sfum_R0013 | - | 16S ribosomal RNA |
| 848741 | 848819 | + | 79 | 116747452 | Sfum_R0014 | - | 14 Ile tRNA |
| 848853 | 848928 | + | 76 | 116747452 | Sfum_R0015 | - | 02 Ala tRNA |
| 849287 | 852097 | + | 2811 | 116747452 | Sfum_R0016 | - | 23S ribosomal RNA |
| 852169 | 852285 | + | 117 | 116747452 | Sfum_R0017 | - | 5S ribosomal RNA |
| 995891 | 996019 | - | 129 | 116747452 | Sfum_R0018 | - | |
| 999525 | 999600 | - | 76 | 116747452 | Sfum_R0019 | - | 09 His tRNA |
| 1053856 | 1053930 | + | 75 | 116747452 | Sfum_R0020 | - | 01 Gly tRNA |
| 1085869 | 1085963 | + | 95 | 116747452 | Sfum_R0021 | - | Sec tRNA |
| 1206296 | 1206371 | - | 76 | 116747452 | Sfum_R0022 | - | 04 Glu tRNA |
| 1206381 | 1206454 | - | 74 | 116747452 | Sfum_R0023 | - | 05 Gln tRNA |
| 1274887 | 1274963 | - | 77 | 116747452 | Sfum_R0024 | - | 11 Arg tRNA |
| 1313294 | 1313370 | + | 77 | 116747452 | Sfum_R0025 | - | 01 Gly tRNA |
| 1375527 | 1375602 | - | 76 | 116747452 | Sfum_R0026 | - | 02 Ala tRNA |
| 1382201 | 1382273 | - | 73 | 116747452 | Sfum_R0027 | - | 02 Ala tRNA |
| 1382637 | 1382724 | + | 88 | 116747452 | Sfum_R0028 | - | 15 Leu tRNA |
| 1497358 | 1497430 | - | 73 | 116747452 | Sfum_R0029 | - | 16 Met tRNA |
| 1518030 | 1518105 | + | 76 | 116747452 | Sfum_R0030 | - | 01 Gly tRNA |
| 1551485 | 1551561 | - | 77 | 116747452 | Sfum_R0031 | - | 03 Pro tRNA |
| 1782059 | 1782130 | + | 72 | 116747452 | Sfum_R0032 | - | 12 Thr tRNA |
| 1900534 | 1900618 | + | 85 | 116747452 | Sfum_R0033 | - | 18 Tyr tRNA |
| 1900784 | 1900860 | + | 77 | 116747452 | Sfum_R0034 | - | 12 Thr tRNA |
| 1971357 | 1971433 | + | 77 | 116747452 | Sfum_R0035 | - | 11 Arg tRNA |
| 1971453 | 1971527 | + | 75 | 116747452 | Sfum_R0036 | - | 10 Lys tRNA |
| 2009580 | 2009902 | - | 323 | 116747452 | Sfum_R0037 | - | RNA component of RNaseP |
| 2034257 | 2034436 | - | 180 | 116747452 | Sfum_R0038 | - | |
| 2207674 | 2207806 | - | 133 | 116747452 | Sfum_R0039 | - | |
| 2361379 | 2361456 | + | 78 | 116747452 | Sfum_R0040 | - | 03 Pro tRNA |
| 2516710 | 2516795 | - | 86 | 116747452 | Sfum_R0041 | - | 15 Leu tRNA |
| 2956592 | 2956762 | + | 171 | 116747452 | Sfum_R0042 | - | |
| 2990428 | 2990515 | + | 88 | 116747452 | Sfum_R0043 | - | 15 Leu tRNA |
| 3000428 | 3000511 | + | 84 | 116747452 | Sfum_R0044 | - | Xaa tRNA |
| 3121848 | 3121940 | + | 93 | 116747452 | Sfum_R0045 | - | 08 Ser tRNA |
| 3121958 | 3122051 | + | 94 | 116747452 | Sfum_R0046 | - | 08 Ser tRNA |
| 3183599 | 3183715 | - | 117 | 116747452 | Sfum_R0047 | - | 5S ribosomal RNA |
| 3183787 | 3186597 | - | 2811 | 116747452 | Sfum_R0048 | - | 23S ribosomal RNA |
| 3186956 | 3187031 | - | 76 | 116747452 | Sfum_R0049 | - | 02 Ala tRNA |
| 3187065 | 3187143 | - | 79 | 116747452 | Sfum_R0050 | - | 14 Ile tRNA |
| 3187202 | 3188756 | - | 1555 | 116747452 | Sfum_R0051 | - | 16S ribosomal RNA |
| 3438094 | 3438189 | + | 96 | 116747452 | Sfum_R0052 | - | 08 Ser tRNA |
| 3438305 | 3438397 | + | 93 | 116747452 | Sfum_R0053 | - | 08 Ser tRNA |
| 3445275 | 3445350 | + | 76 | 116747452 | Sfum_R0054 | - | 07 Asn tRNA |
| 3516657 | 3516732 | + | 76 | 116747452 | Sfum_R0055 | - | 11 Arg tRNA |
| 3638674 | 3638748 | - | 75 | 116747452 | Sfum_R0056 | - | 03 Pro tRNA |
| 3903641 | 3903727 | - | 87 | 116747452 | Sfum_R0057 | - | 15 Leu tRNA |
| 4205868 | 4205945 | - | 78 | 116747452 | Sfum_R0058 | - | 04 Glu tRNA |
| 4205999 | 4206074 | - | 76 | 116747452 | Sfum_R0059 | - | 10 Lys tRNA |
| 4437177 | 4437253 | - | 77 | 116747452 | Sfum_R0060 | - | 11 Arg tRNA |
| 4459662 | 4459736 | + | 75 | 116747452 | Sfum_R0061 | - | 05 Gln tRNA |
| 4570821 | 4570897 | - | 77 | 116747452 | Sfum_R0062 | - | 11 Arg tRNA |
| 4622994 | 4623344 | + | 351 | 116747452 | Sfum_R0063 | - | tmRNA |
| 4857774 | 4857850 | - | 77 | 116747452 | Sfum_R0064 | - | 16 Met tRNA |