Геном прокариот/Материалы:NC 008600
Внешний вид
Базовый уровень статей | |
LOCUS NC_008600 5257091 bp DNA circular BCT 18-APR-2007 DEFINITION Bacillus thuringiensis str. Al Hakam, complete genome. ACCESSION NC_008600 VERSION NC_008600.1 GI:118475778 KEYWORDS . SOURCE Bacillus thuringiensis str. Al Hakam ORGANISM Bacillus thuringiensis str. Al Hakam Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. REFERENCE 1 (bases 1 to 5257091) AUTHORS Challacombe,J.F., Altherr,M.R., Xie,G., Bhotika,S.S., Brown,N., Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J., Chertkov,O., Cleland,C., Dimitrijevic,M., Doggett,N.A., Fawcett,J.J., Glavina,T., Goodwin,L.A., Green,L.D., Han,C.S., Hill,K.K., Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J., Lucas,S., Malfatti,S., Martinez,D., McMurry,K., Meincke,L.J., Misra,M., Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T., Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L., Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N., Thompson,L.S., Tice,H., Ticknor,L.O., Wills,P.L., Gilna,P. and Brettin,T.S. TITLE The Complete Genome Sequence of Bacillus thuringiensis Al Hakam JOURNAL J. Bacteriol. 189, 3680-3681 (2007) PUBMED 17337577 REFERENCE 2 (bases 1 to 5257091) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-NOV-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5257091) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Detter,J.C., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Goodwin,L.A., Han,l., Munk,A.C., Saunders,E., Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Martinez,A.D., Misra,M., Tapia,R., Thayer,N.N., Xie,G., Brown,N., Green,L.D., Hill,K.K., Jackson,P.J., Longmire,J., Rubin,E. and Richardson,P. TITLE Direct Submission JOURNAL Submitted (14-NOV-2006) Joint Genome Institute, Department of Energy, 2800 Mitchell Drive, Walnut Creek, Ca 94598, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000485. Bacillus thuringiensis Al Hakam was collected at a suspected bioweapons facility in Iraq by the United Nations Special Commission (Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Radnedge, L, Agron, PG Hill, KK, Jackson, PJ, Ticknor, LO, Keim, P, and Andersen, GL. Appl Environ Microbiol 2003. 69:2755-64). Plasmid and fosmid libraries were prepared at the Joint Genome Institute in Los Alamos (JGI-LANL), NM. Shotgun sequencing was performed at the JGI Production Genomics Facility (JGI-PGF) in Walnut Creek, CA. Draft assemblies were based on 246217 total reads. All libraries provided 23x coverage of the genome. The Phred/Phrap/Consed software package (www.phrap.com) was used for sequence assembly and quality assessment. After the shotgun stage, reads were assembled with parallel phrap (High Performance Software, LLC). Possible mis-assemblies were corrected manually or by transposon bombing (Epicentre Biotechnologies) of bridging clones. Gaps between contigs were closed by editing in Consed, custom primer walk or PCR amplification. A total of 25321 additional reactions were necessary to close gaps and to raise the quality of the finished sequence. The completed genome sequence of B. thuringiensis Al Hakam achieves an average of 24-fold sequence coverage per base with error rate less than 1 in 100,000. Gene predictions were obtained using Glimmer and tRNAs were identified using tRNAScan-SE. Basic analysis of the gene predictions was performed by comparing coding sequences against the PFam, BLOCKS and Prodom databases. Gene definitions and functional classes were added manually by a team of annotators at JGI-LANL, using BLAST results in addition to information from the basic analysis. COMPLETENESS: full length.
Расположение РНК
[править]Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
9309 | 10762 | + | 1454 | 118475778 | BALH_r16S01 | - | 16S ribosomal RNA |
10993 | 11072 | + | 80 | 118475778 | BALH_tIle01 | - | 14 Ile tRNA |
11078 | 11156 | + | 79 | 118475778 | BALH_tAla05 | - | 02 Ala tRNA |
11249 | 14159 | + | 2911 | 118475778 | BALH_r23S01 | - | 23S ribosomal RNA |
14206 | 14324 | + | 119 | 118475778 | BALH_r5S01 | - | 5S ribosomal RNA |
21776 | 21871 | + | 96 | 118475778 | BALH_tSer05 | - | 08 Ser tRNA |
29109 | 30562 | + | 1454 | 118475778 | BALH_r16S02 | - | 16S ribosomal RNA |
30793 | 30872 | + | 80 | 118475778 | BALH_tIle03 | - | 14 Ile tRNA |
30878 | 30956 | + | 79 | 118475778 | BALH_tAla03 | - | 02 Ala tRNA |
31048 | 33958 | + | 2911 | 118475778 | BALH_r23S02 | - | 23S ribosomal RNA |
34005 | 34123 | + | 119 | 118475778 | BALH_r5S02 | - | 5S ribosomal RNA |
64436 | 64512 | + | 77 | 118475778 | BALH_tMet02 | - | 16 Met tRNA |
64523 | 64597 | + | 75 | 118475778 | BALH_tGlu06 | - | 04 Glu tRNA |
82434 | 83887 | + | 1454 | 118475778 | BALH_r16S03 | - | 16S ribosomal RNA |
84146 | 87057 | + | 2912 | 118475778 | BALH_r23S03 | - | 23S ribosomal RNA |
87158 | 87271 | + | 114 | 118475778 | BALH_r5S03 | - | 5S ribosomal RNA |
87277 | 87355 | + | 79 | 118475778 | BALH_tVal07 | - | 13 Val tRNA |
87357 | 87435 | + | 79 | 118475778 | BALH_tThr02 | - | 12 Thr tRNA |
87446 | 87524 | + | 79 | 118475778 | BALH_tLys02 | - | 10 Lys tRNA |
87537 | 87620 | + | 84 | 118475778 | BALH_tLeu08 | - | 15 Leu tRNA |
87647 | 87724 | + | 78 | 118475778 | BALH_tGly03 | - | 01 Gly tRNA |
87738 | 87829 | + | 92 | 118475778 | BALH_tLeu04 | - | 15 Leu tRNA |
87830 | 87906 | + | 77 | 118475778 | BALH_tArg03 | - | 11 Arg tRNA |
87912 | 87988 | + | 77 | 118475778 | BALH_tPro01 | - | 03 Pro tRNA |
87995 | 88073 | + | 79 | 118475778 | BALH_tAla01 | - | 02 Ala tRNA |
88149 | 89602 | + | 1454 | 118475778 | BALH_r16S04 | - | 16S ribosomal RNA |
89861 | 92771 | + | 2911 | 118475778 | BALH_r23S04 | - | 23S ribosomal RNA |
92817 | 92935 | + | 119 | 118475778 | BALH_r5S04 | - | 5S ribosomal RNA |
151215 | 152668 | + | 1454 | 118475778 | BALH_r16S05 | - | 16S ribosomal RNA |
152927 | 155837 | + | 2911 | 118475778 | BALH_r23S05 | - | 23S ribosomal RNA |
155923 | 156036 | + | 114 | 118475778 | BALH_r5S05 | - | 5S ribosomal RNA |
156046 | 156123 | + | 78 | 118475778 | BALH_tAsn02 | - | 07 Asn tRNA |
156125 | 156200 | + | 76 | 118475778 | BALH_tThr05 | - | 12 Thr tRNA |
156222 | 156299 | + | 78 | 118475778 | BALH_tGlu01 | - | 04 Glu tRNA |
156302 | 156380 | + | 79 | 118475778 | BALH_tVal04 | - | 13 Val tRNA |
156395 | 156481 | + | 87 | 118475778 | BALH_tTyr03 | - | 18 Tyr tRNA |
156544 | 156621 | + | 78 | 118475778 | BALH_tGln02 | - | 05 Gln tRNA |
156624 | 156702 | + | 79 | 118475778 | BALH_tLys03 | - | 10 Lys tRNA |
156705 | 156779 | + | 75 | 118475778 | BALH_tGly01 | - | 01 Gly tRNA |
156787 | 156862 | + | 76 | 118475778 | BALH_tAla02 | - | 02 Ala tRNA |
257007 | 257084 | + | 78 | 118475778 | BALH_tAsn04 | - | 07 Asn tRNA |
257085 | 257178 | + | 94 | 118475778 | BALH_tSer06 | - | 08 Ser tRNA |
257184 | 257261 | + | 78 | 118475778 | BALH_tGlu02 | - | 04 Glu tRNA |
257263 | 257341 | + | 79 | 118475778 | BALH_tVal03 | - | 13 Val tRNA |
257385 | 257463 | + | 79 | 118475778 | BALH_tAsp02 | - | 06 Asp tRNA |
257548 | 257625 | + | 78 | 118475778 | BALH_tGln03 | - | 05 Gln tRNA |
257628 | 257703 | + | 76 | 118475778 | BALH_tLys06 | - | 10 Lys tRNA |
257717 | 257805 | + | 89 | 118475778 | BALH_tLeu02 | - | 15 Leu tRNA |
257898 | 257977 | + | 80 | 118475778 | BALH_tArg02 | - | 11 Arg tRNA |
257979 | 258058 | + | 80 | 118475778 | BALH_tPro02 | - | 03 Pro tRNA |
258057 | 258130 | + | 74 | 118475778 | BALH_tGly09 | - | 01 Gly tRNA |
258204 | 259647 | + | 1444 | 118475778 | BALH_r16S06 | - | 16S ribosomal RNA |
259915 | 262825 | + | 2911 | 118475778 | BALH_r23S06 | - | 23S ribosomal RNA |
262872 | 262990 | + | 119 | 118475778 | BALH_r5S06 | - | 5S ribosomal RNA |
263000 | 263079 | + | 80 | 118475778 | BALH_tMet08 | - | 16 Met tRNA |
263080 | 263158 | + | 79 | 118475778 | BALH_tAsp05 | - | 06 Asp tRNA |
287745 | 289198 | + | 1454 | 118475778 | BALH_r16S07 | - | 16S ribosomal RNA |
289458 | 292369 | + | 2912 | 118475778 | BALH_r23S07 | - | 23S ribosomal RNA |
292415 | 292533 | + | 119 | 118475778 | BALH_r5S07 | - | 5S ribosomal RNA |
294991 | 296444 | + | 1454 | 118475778 | BALH_r16S08 | - | 16S ribosomal RNA |
296701 | 299611 | + | 2911 | 118475778 | BALH_r23S08 | - | 23S ribosomal RNA |
299658 | 299776 | + | 119 | 118475778 | BALH_r5S08 | - | 5S ribosomal RNA |
302303 | 303756 | + | 1454 | 118475778 | BALH_r16S09 | - | 16S ribosomal RNA |
304015 | 306925 | + | 2911 | 118475778 | BALH_r23S09 | - | 23S ribosomal RNA |
306973 | 307091 | + | 119 | 118475778 | BALH_r5S09 | - | 5S ribosomal RNA |
312307 | 313760 | + | 1454 | 118475778 | BALH_r16S10 | - | 16S ribosomal RNA |
314019 | 316929 | + | 2911 | 118475778 | BALH_r23S10 | - | 23S ribosomal RNA |
316977 | 317095 | + | 119 | 118475778 | BALH_r5S10 | - | 5S ribosomal RNA |
319482 | 320935 | + | 1454 | 118475778 | BALH_r16S11 | - | 16S ribosomal RNA |
321193 | 324103 | + | 2911 | 118475778 | BALH_r23S11 | - | 23S ribosomal RNA |
324151 | 324269 | + | 119 | 118475778 | BALH_r5S11 | - | 5S ribosomal RNA |
534455 | 535897 | + | 1443 | 118475778 | BALH_r16S12 | - | 16S ribosomal RNA |
536166 | 539078 | + | 2913 | 118475778 | BALH_r23S12 | - | 23S ribosomal RNA |
539178 | 539291 | + | 114 | 118475778 | BALH_r5S12 | - | 5S ribosomal RNA |
539300 | 539377 | + | 78 | 118475778 | BALH_tAsn05 | - | 07 Asn tRNA |
539377 | 539471 | + | 95 | 118475778 | BALH_tSer01 | - | 08 Ser tRNA |
539486 | 539563 | + | 78 | 118475778 | BALH_tGlu03 | - | 04 Glu tRNA |
539566 | 539644 | + | 79 | 118475778 | BALH_tVal05 | - | 13 Val tRNA |
539666 | 539745 | + | 80 | 118475778 | BALH_tMet01 | - | 16 Met tRNA |
539746 | 539824 | + | 79 | 118475778 | BALH_tAsp03 | - | 06 Asp tRNA |
539831 | 539909 | + | 79 | 118475778 | BALH_tPhe01 | - | 17 Phe tRNA |
539925 | 540003 | + | 79 | 118475778 | BALH_tThr04 | - | 12 Thr tRNA |
540011 | 540097 | + | 87 | 118475778 | BALH_tTyr01 | - | 18 Tyr tRNA |
540102 | 540178 | + | 77 | 118475778 | BALH_tTrp02 | - | 20 Trp tRNA |
540195 | 540273 | + | 79 | 118475778 | BALH_tHis02 | - | 09 His tRNA |
540334 | 540411 | + | 78 | 118475778 | BALH_tGln01 | - | 05 Gln tRNA |
540414 | 540491 | + | 78 | 118475778 | BALH_tGly05 | - | 01 Gly tRNA |
540503 | 540576 | + | 74 | 118475778 | BALH_tCys01 | - | 19 Cys tRNA |
540584 | 540671 | + | 88 | 118475778 | BALH_tLeu06 | - | 15 Leu tRNA |
552778 | 552854 | + | 77 | 118475778 | BALH_tGly08 | - | 01 Gly tRNA |
761982 | 763435 | + | 1454 | 118475778 | BALH_r16S13 | - | 16S ribosomal RNA |
763694 | 766604 | + | 2911 | 118475778 | BALH_r23S13 | - | 23S ribosomal RNA |
766706 | 766819 | + | 114 | 118475778 | BALH_r5S13 | - | 5S ribosomal RNA |
766825 | 766903 | + | 79 | 118475778 | BALH_tVal02 | - | 13 Val tRNA |
766909 | 766995 | + | 87 | 118475778 | BALH_tTyr02 | - | 18 Tyr tRNA |
767004 | 767081 | + | 78 | 118475778 | BALH_tGln04 | - | 05 Gln tRNA |
767083 | 767161 | + | 79 | 118475778 | BALH_tLys04 | - | 10 Lys tRNA |
767173 | 767256 | + | 84 | 118475778 | BALH_tLeu01 | - | 15 Leu tRNA |
767283 | 767360 | + | 78 | 118475778 | BALH_tGly10 | - | 01 Gly tRNA |
767374 | 767465 | + | 92 | 118475778 | BALH_tLeu05 | - | 15 Leu tRNA |
767466 | 767542 | + | 77 | 118475778 | BALH_tArg01 | - | 11 Arg tRNA |
767550 | 767626 | + | 77 | 118475778 | BALH_tPro04 | - | 03 Pro tRNA |
767640 | 767715 | + | 76 | 118475778 | BALH_tAla06 | - | 02 Ala tRNA |
767733 | 767828 | + | 96 | 118475778 | BALH_tSer03 | - | 08 Ser tRNA |
767881 | 767976 | + | 96 | 118475778 | BALH_tSer07 | - | 08 Ser tRNA |
768001 | 768080 | + | 80 | 118475778 | BALH_tMet07 | - | 16 Met tRNA |
768081 | 768159 | + | 79 | 118475778 | BALH_tAsp04 | - | 06 Asp tRNA |
768165 | 768243 | + | 79 | 118475778 | BALH_tPhe03 | - | 17 Phe tRNA |
768250 | 768325 | + | 76 | 118475778 | BALH_tThr01 | - | 12 Thr tRNA |
768329 | 768402 | + | 74 | 118475778 | BALH_tTrp01 | - | 20 Trp tRNA |
768410 | 768489 | + | 80 | 118475778 | BALH_tIle04 | - | 14 Ile tRNA |
768497 | 768574 | + | 78 | 118475778 | BALH_tAsn01 | - | 07 Asn tRNA |
768573 | 768647 | + | 75 | 118475778 | BALH_tGlu04 | - | 04 Glu tRNA |
1292399 | 1292474 | - | 76 | 118475778 | BALH_tVal01 | - | 13 Val tRNA |
4081628 | 4081704 | - | 77 | 118475778 | BALH_tMet06 | - | 16 Met tRNA |
4294665 | 4294741 | - | 77 | 118475778 | BALH_tGly02 | - | 01 Gly tRNA |
4666220 | 4666294 | - | 75 | 118475778 | BALH_tGlu07 | - | 04 Glu tRNA |
4666298 | 4666391 | - | 94 | 118475778 | BALH_tSer04 | - | 08 Ser tRNA |
4666396 | 4666473 | - | 78 | 118475778 | BALH_tAsn03 | - | 07 Asn tRNA |
4666478 | 4666557 | - | 80 | 118475778 | BALH_tIle02 | - | 14 Ile tRNA |
4666565 | 4666638 | - | 74 | 118475778 | BALH_tGly07 | - | 01 Gly tRNA |
4666649 | 4666727 | - | 79 | 118475778 | BALH_tLys05 | - | 10 Lys tRNA |
4666735 | 4666813 | - | 79 | 118475778 | BALH_tThr03 | - | 12 Thr tRNA |
4666825 | 4666903 | - | 79 | 118475778 | BALH_tPhe04 | - | 17 Phe tRNA |
4666913 | 4666991 | - | 79 | 118475778 | BALH_tAsp01 | - | 06 Asp tRNA |
4666990 | 4667069 | - | 80 | 118475778 | BALH_tMet04 | - | 16 Met tRNA |
4667094 | 4667189 | - | 96 | 118475778 | BALH_tSer02 | - | 08 Ser tRNA |
4667204 | 4667283 | - | 80 | 118475778 | BALH_tMet03 | - | 16 Met tRNA |
4667285 | 4667364 | - | 80 | 118475778 | BALH_tMet05 | - | 16 Met tRNA |
4667382 | 4667458 | - | 77 | 118475778 | BALH_tAla04 | - | 02 Ala tRNA |
4667472 | 4667548 | - | 77 | 118475778 | BALH_tPro03 | - | 03 Pro tRNA |
4667556 | 4667632 | - | 77 | 118475778 | BALH_tArg05 | - | 11 Arg tRNA |
4667633 | 4667724 | - | 92 | 118475778 | BALH_tLeu03 | - | 15 Leu tRNA |
4667738 | 4667815 | - | 78 | 118475778 | BALH_tGly06 | - | 01 Gly tRNA |
4667842 | 4667925 | - | 84 | 118475778 | BALH_tLeu07 | - | 15 Leu tRNA |
4667945 | 4668023 | - | 79 | 118475778 | BALH_tHis01 | - | 09 His tRNA |
4668030 | 4668108 | - | 79 | 118475778 | BALH_tThr06 | - | 12 Thr tRNA |
4668110 | 4668188 | - | 79 | 118475778 | BALH_tVal06 | - | 13 Val tRNA |
4668193 | 4668306 | - | 114 | 118475778 | BALH_r5S14 | - | 5S ribosomal RNA |
4668407 | 4671317 | - | 2911 | 118475778 | BALH_r23S014 | - | 23S ribosomal RNA |
4671585 | 4673028 | - | 1444 | 118475778 | BALH_r16S14 | - | 16S ribosomal RNA |
4880556 | 4880634 | - | 79 | 118475778 | BALH_tArg04 | - | 11 Arg tRNA |
5236468 | 5236543 | - | 76 | 118475778 | BALH_tPhe02 | - | 17 Phe tRNA |
5236582 | 5236660 | - | 79 | 118475778 | BALH_tAsp06 | - | 06 Asp tRNA |
5236679 | 5236753 | - | 75 | 118475778 | BALH_tGlu05 | - | 04 Glu tRNA |
5236764 | 5236842 | - | 79 | 118475778 | BALH_tLys01 | - | 10 Lys tRNA |