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Геном прокариот/Материалы:NC 008609

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   LOCUS       NC_008609            4008000 bp    DNA     circular BCT 12-DEC-2006
   DEFINITION  Pelobacter propionicus DSM 2379, complete genome.
   ACCESSION   NC_008609
   VERSION     NC_008609.1  GI:118578449
   KEYWORDS    .
   SOURCE      Pelobacter propionicus DSM 2379
     ORGANISM  Pelobacter propionicus DSM 2379
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Pelobacteraceae; Pelobacter.
   REFERENCE   1  (bases 1 to 4008000)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Pelobacter propionicus DSM 2379
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4008000)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4008000)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (31-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000482.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436113
               Source DNA available from Derek Lovley (dlovley@bio.umass.edu)
               Bacteria available from DSMZ: DSM 2379
               Contacts: Derek Lovley (dlovley@bio.umass.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
300980 301085 - 106 118578449 Ppro_R0001 - SRP RNA; RNA component of signal recognition particle
301119 301209 - 91 118578449 Ppro_R0002 - 08 Ser tRNA
354755 354841 + 87 118578449 Ppro_R0003 - 15 Leu tRNA
440109 440184 - 76 118578449 Ppro_R0004 - 02 Ala tRNA
654762 654849 + 88 118578449 Ppro_R0006 - 08 Ser tRNA
703558 703633 + 76 118578449 Ppro_R0007 - 12 Thr tRNA
703659 703743 + 85 118578449 Ppro_R0008 - 18 Tyr tRNA
703849 703925 + 77 118578449 Ppro_R0009 - 01 Gly tRNA
703934 704009 + 76 118578449 Ppro_R0010 - 12 Thr tRNA
705513 705589 + 77 118578449 Ppro_R0011 - 20 Trp tRNA
778119 778193 + 75 118578449 Ppro_R0012 - 05 Gln tRNA
1067193 1067269 - 77 118578449 Ppro_R0014 - 16 Met tRNA
1175857 1175933 - 77 118578449 Ppro_R0015 - 11 Arg tRNA
1233155 1233231 - 77 118578449 Ppro_R0017 - 06 Asp tRNA
1233253 1233328 - 76 118578449 Ppro_R0018 - 13 Val tRNA
1233339 1233415 - 77 118578449 Ppro_R0019 - 06 Asp tRNA
1237262 1237346 - 85 118578449 Ppro_R0020 - 15 Leu tRNA
1352684 1354234 + 1551 118578449 Ppro_R0021 - 16S ribosomal RNA
1354380 1354456 + 77 118578449 Ppro_R0022 - 14 Ile tRNA
1354479 1354554 + 76 118578449 Ppro_R0023 - 02 Ala tRNA
1355114 1357669 + 2556 118578449 Ppro_R0024 - 23S ribosomal RNA
1357807 1357923 + 117 118578449 Ppro_R0025 - 5S ribosomal RNA
1386949 1387299 + 351 118578449 Ppro_R0026 -
1399089 1399164 - 76 118578449 Ppro_R0027 - 12 Thr tRNA
1409531 1409606 - 76 118578449 Ppro_R0028 - 12 Thr tRNA
1433913 1433999 + 87 118578449 Ppro_R0029 - 15 Leu tRNA
1444993 1445069 + 77 118578449 Ppro_R0030 - 03 Pro tRNA
1526541 1526615 + 75 118578449 Ppro_R0031 - 13 Val tRNA
1803507 1805057 + 1551 118578449 Ppro_R0032 - 16S ribosomal RNA
1805203 1805279 + 77 118578449 Ppro_R0033 - 14 Ile tRNA
1805302 1805377 + 76 118578449 Ppro_R0034 - 02 Ala tRNA
1805937 1808492 + 2556 118578449 Ppro_R0035 - 23S ribosomal RNA
1808630 1808746 + 117 118578449 Ppro_R0036 - 5S ribosomal RNA
1823398 1823484 + 87 118578449 Ppro_R0037 - 15 Leu tRNA
1830984 1831059 - 76 118578449 Ppro_R0038 - 09 His tRNA
1930956 1931029 - 74 118578449 Ppro_R0039 - 05 Gln tRNA
2071223 2071310 - 88 118578449 Ppro_R0040 - 08 Ser tRNA
2304326 2304411 - 86 118578449 Ppro_R0041 - 15 Leu tRNA
2304533 2304608 + 76 118578449 Ppro_R0042 - 02 Ala tRNA
2365165 2365241 + 77 118578449 Ppro_R0043 - 11 Arg tRNA
2483721 2483797 - 77 118578449 Ppro_R0044 - 03 Pro tRNA
2491448 2491522 - 75 118578449 Ppro_R0045 - 13 Val tRNA
2548510 2548586 + 77 118578449 Ppro_R0046 - 11 Arg tRNA
2593266 2593340 - 75 118578449 Ppro_R0047 - 01 Gly tRNA
2801748 2801822 - 75 118578449 Ppro_R0048 - 01 Gly tRNA
2882101 2882177 + 77 118578449 Ppro_R0049 - 16 Met tRNA
2882748 2882864 - 117 118578449 Ppro_R0050 - 5S ribosomal RNA
2883002 2885557 - 2556 118578449 Ppro_R0051 - 23S ribosomal RNA
2886117 2886192 - 76 118578449 Ppro_R0052 - 02 Ala tRNA
2886215 2886291 - 77 118578449 Ppro_R0053 - 14 Ile tRNA
2886437 2887987 - 1551 118578449 Ppro_R0054 - 16S ribosomal RNA
2898043 2898119 - 77 118578449 Ppro_R0055 - 11 Arg tRNA
2907772 2907846 + 75 118578449 Ppro_R0056 - 19 Cys tRNA
2999897 2999973 + 77 118578449 Ppro_R0057 - 11 Arg tRNA
3213600 3213692 - 93 118578449 Ppro_R0058 - 08 Ser tRNA
3216305 3216380 + 76 118578449 Ppro_R0059 - 17 Phe tRNA
3331023 3331139 - 117 118578449 Ppro_R0060 - 5S ribosomal RNA
3331277 3333832 - 2556 118578449 Ppro_R0061 - 23S ribosomal RNA
3334392 3334467 - 76 118578449 Ppro_R0062 - 02 Ala tRNA
3334490 3334566 - 77 118578449 Ppro_R0063 - 14 Ile tRNA
3334711 3336261 - 1551 118578449 Ppro_R0064 - 16S ribosomal RNA
3386631 3386706 + 76 118578449 Ppro_R0065 - 10 Lys tRNA
3386761 3386836 + 76 118578449 Ppro_R0066 - 10 Lys tRNA
3386959 3387036 + 78 118578449 Ppro_R0067 - 04 Glu tRNA
3435422 3435497 - 76 118578449 Ppro_R0068 - 07 Asn tRNA
3639885 3639961 - 77 118578449 Ppro_R0070 - 16 Met tRNA
3929479 3929555 - 77 118578449 Ppro_R0071 - 03 Pro tRNA