Геном прокариот/Материалы:NC 008609

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008609            4008000 bp    DNA     circular BCT 12-DEC-2006
   DEFINITION  Pelobacter propionicus DSM 2379, complete genome.
   ACCESSION   NC_008609
   VERSION     NC_008609.1  GI:118578449
   KEYWORDS    .
   SOURCE      Pelobacter propionicus DSM 2379
     ORGANISM  Pelobacter propionicus DSM 2379
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Pelobacteraceae; Pelobacter.
   REFERENCE   1  (bases 1 to 4008000)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Pelobacter propionicus DSM 2379
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4008000)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4008000)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (31-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000482.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436113
               Source DNA available from Derek Lovley (dlovley@bio.umass.edu)
               Bacteria available from DSMZ: DSM 2379
               Contacts: Derek Lovley (dlovley@bio.umass.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
300980	301085	-	106	118578449	Ppro_R0001	-	SRP RNA; RNA component of signal recognition particle
301119	301209	-	91	118578449	Ppro_R0002	-	^{08 Ser tRNA}
354755	354841	+	87	118578449	Ppro_R0003	-	^{15 Leu tRNA}
440109	440184	-	76	118578449	Ppro_R0004	-	^{02 Ala tRNA}
654762	654849	+	88	118578449	Ppro_R0006	-	^{08 Ser tRNA}
703558	703633	+	76	118578449	Ppro_R0007	-	^{12 Thr tRNA}
703659	703743	+	85	118578449	Ppro_R0008	-	^{18 Tyr tRNA}
703849	703925	+	77	118578449	Ppro_R0009	-	^{01 Gly tRNA}
703934	704009	+	76	118578449	Ppro_R0010	-	^{12 Thr tRNA}
705513	705589	+	77	118578449	Ppro_R0011	-	^{20 Trp tRNA}
778119	778193	+	75	118578449	Ppro_R0012	-	^{05 Gln tRNA}
1067193	1067269	-	77	118578449	Ppro_R0014	-	^{16 Met tRNA}
1175857	1175933	-	77	118578449	Ppro_R0015	-	^{11 Arg tRNA}
1233155	1233231	-	77	118578449	Ppro_R0017	-	^{06 Asp tRNA}
1233253	1233328	-	76	118578449	Ppro_R0018	-	^{13 Val tRNA}
1233339	1233415	-	77	118578449	Ppro_R0019	-	^{06 Asp tRNA}
1237262	1237346	-	85	118578449	Ppro_R0020	-	^{15 Leu tRNA}
1352684	1354234	+	1551	118578449	Ppro_R0021	-	16S ribosomal RNA
1354380	1354456	+	77	118578449	Ppro_R0022	-	^{14 Ile tRNA}
1354479	1354554	+	76	118578449	Ppro_R0023	-	^{02 Ala tRNA}
1355114	1357669	+	2556	118578449	Ppro_R0024	-	23S ribosomal RNA
1357807	1357923	+	117	118578449	Ppro_R0025	-	5S ribosomal RNA
1386949	1387299	+	351	118578449	Ppro_R0026	-
1399089	1399164	-	76	118578449	Ppro_R0027	-	^{12 Thr tRNA}
1409531	1409606	-	76	118578449	Ppro_R0028	-	^{12 Thr tRNA}
1433913	1433999	+	87	118578449	Ppro_R0029	-	^{15 Leu tRNA}
1444993	1445069	+	77	118578449	Ppro_R0030	-	^{03 Pro tRNA}
1526541	1526615	+	75	118578449	Ppro_R0031	-	^{13 Val tRNA}
1803507	1805057	+	1551	118578449	Ppro_R0032	-	16S ribosomal RNA
1805203	1805279	+	77	118578449	Ppro_R0033	-	^{14 Ile tRNA}
1805302	1805377	+	76	118578449	Ppro_R0034	-	^{02 Ala tRNA}
1805937	1808492	+	2556	118578449	Ppro_R0035	-	23S ribosomal RNA
1808630	1808746	+	117	118578449	Ppro_R0036	-	5S ribosomal RNA
1823398	1823484	+	87	118578449	Ppro_R0037	-	^{15 Leu tRNA}
1830984	1831059	-	76	118578449	Ppro_R0038	-	^{09 His tRNA}
1930956	1931029	-	74	118578449	Ppro_R0039	-	^{05 Gln tRNA}
2071223	2071310	-	88	118578449	Ppro_R0040	-	^{08 Ser tRNA}
2304326	2304411	-	86	118578449	Ppro_R0041	-	^{15 Leu tRNA}
2304533	2304608	+	76	118578449	Ppro_R0042	-	^{02 Ala tRNA}
2365165	2365241	+	77	118578449	Ppro_R0043	-	^{11 Arg tRNA}
2483721	2483797	-	77	118578449	Ppro_R0044	-	^{03 Pro tRNA}
2491448	2491522	-	75	118578449	Ppro_R0045	-	^{13 Val tRNA}
2548510	2548586	+	77	118578449	Ppro_R0046	-	^{11 Arg tRNA}
2593266	2593340	-	75	118578449	Ppro_R0047	-	^{01 Gly tRNA}
2801748	2801822	-	75	118578449	Ppro_R0048	-	^{01 Gly tRNA}
2882101	2882177	+	77	118578449	Ppro_R0049	-	^{16 Met tRNA}
2882748	2882864	-	117	118578449	Ppro_R0050	-	5S ribosomal RNA
2883002	2885557	-	2556	118578449	Ppro_R0051	-	23S ribosomal RNA
2886117	2886192	-	76	118578449	Ppro_R0052	-	^{02 Ala tRNA}
2886215	2886291	-	77	118578449	Ppro_R0053	-	^{14 Ile tRNA}
2886437	2887987	-	1551	118578449	Ppro_R0054	-	16S ribosomal RNA
2898043	2898119	-	77	118578449	Ppro_R0055	-	^{11 Arg tRNA}
2907772	2907846	+	75	118578449	Ppro_R0056	-	^{19 Cys tRNA}
2999897	2999973	+	77	118578449	Ppro_R0057	-	^{11 Arg tRNA}
3213600	3213692	-	93	118578449	Ppro_R0058	-	^{08 Ser tRNA}
3216305	3216380	+	76	118578449	Ppro_R0059	-	^{17 Phe tRNA}
3331023	3331139	-	117	118578449	Ppro_R0060	-	5S ribosomal RNA
3331277	3333832	-	2556	118578449	Ppro_R0061	-	23S ribosomal RNA
3334392	3334467	-	76	118578449	Ppro_R0062	-	^{02 Ala tRNA}
3334490	3334566	-	77	118578449	Ppro_R0063	-	^{14 Ile tRNA}
3334711	3336261	-	1551	118578449	Ppro_R0064	-	16S ribosomal RNA
3386631	3386706	+	76	118578449	Ppro_R0065	-	^{10 Lys tRNA}
3386761	3386836	+	76	118578449	Ppro_R0066	-	^{10 Lys tRNA}
3386959	3387036	+	78	118578449	Ppro_R0067	-	^{04 Glu tRNA}
3435422	3435497	-	76	118578449	Ppro_R0068	-	^{07 Asn tRNA}
3639885	3639961	-	77	118578449	Ppro_R0070	-	^{16 Met tRNA}
3929479	3929555	-	77	118578449	Ppro_R0071	-	^{03 Pro tRNA}