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Геном прокариот/Материалы:NC 008726

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   LOCUS       NC_008726            6491865 bp    DNA     circular BCT 29-DEC-2006
   DEFINITION  Mycobacterium vanbaalenii PYR-1, complete genome.
   ACCESSION   NC_008726
   VERSION     NC_008726.1  GI:120401028
   KEYWORDS    .
   SOURCE      Mycobacterium vanbaalenii PYR-1
     ORGANISM  Mycobacterium vanbaalenii PYR-1
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 6491865)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I.J., Miller,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Mycobacterium vanbaalenii PYR-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6491865)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6491865)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I.J., Miller,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000511.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  4000382
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
13216 13289 + 74 120401028 Mvan_R0001 - 14 Ile tRNA
13436 13511 + 76 120401028 Mvan_R0002 - 02 Ala tRNA
36595 36677 + 83 120401028 Mvan_R0003 - 15 Leu tRNA
494275 494340 - 66 120401028 Mvan_R0006 - 08 Ser tRNA
629824 629897 - 74 120401028 Mvan_R0007 - 01 Gly tRNA
1025690 1025772 + 83 120401028 Mvan_R0009 - 18 Tyr tRNA
1316426 1316498 + 73 120401028 Mvan_R0010 - 12 Thr tRNA
1316550 1316623 + 74 120401028 Mvan_R0011 - 16 Met tRNA
1318476 1318548 + 73 120401028 Mvan_R0012 - 20 Trp tRNA
1937234 1937310 + 77 120401028 Mvan_R0013 - 16 Met tRNA
2047377 2047742 + 366 120401028 Mvan_R0014 -
2086423 2086498 + 76 120401028 Mvan_R0015 - 02 Ala tRNA
2277882 2277956 + 75 120401028 Mvan_R0016 - 05 Gln tRNA
2278020 2278095 + 76 120401028 Mvan_R0017 - 04 Glu tRNA
2666393 2666467 - 75 120401028 Mvan_R0018 - 13 Val tRNA
2666479 2666552 - 74 120401028 Mvan_R0019 - 19 Cys tRNA
2666576 2666651 - 76 120401028 Mvan_R0020 - 01 Gly tRNA
2667379 2667453 + 75 120401028 Mvan_R0021 - 13 Val tRNA
3013083 3013159 - 77 120401028 Mvan_R0022 - 15 Leu tRNA
3434315 3434399 + 85 120401028 Mvan_R0023 - 16 Met tRNA
3478452 3478528 - 77 120401028 Mvan_R0024 - 03 Pro tRNA
3500936 3501048 - 113 120401028 Mvan_R0025 - 5S ribosomal RNA
3501139 3504292 - 3154 120401028 Mvan_R0026 - 23S ribosomal RNA
3504692 3506206 - 1515 120401028 Mvan_R0027 - 16S ribosomal RNA
3563881 3563951 - 71 120401028 Mvan_R0028 - 19 Cys tRNA
3705136 3705224 + 89 120401028 Mvan_R0029 - 15 Leu tRNA
3845397 3845765 - 369 120401028 Mvan_R0030 - RNA component of RNaseP
3988608 3988682 - 75 120401028 Mvan_R0031 - 13 Val tRNA
4049352 4049425 - 74 120401028 Mvan_R0032 - 16 Met tRNA
4062796 4062871 - 76 120401028 Mvan_R0033 - 07 Asn tRNA
4324160 4324236 - 77 120401028 Mvan_R0034 - 03 Pro tRNA
4324373 4324446 + 74 120401028 Mvan_R0035 - 01 Gly tRNA
4368107 4368179 + 73 120401028 Mvan_R0036 - 11 Arg tRNA
4393960 4394035 + 76 120401028 Mvan_R0037 - 09 His tRNA
4395842 4395917 + 76 120401028 Mvan_R0038 - 10 Lys tRNA
4590937 4591019 - 83 120401028 Mvan_R0039 - 15 Leu tRNA
4634040 4634152 - 113 120401028 Mvan_R0040 - 5S ribosomal RNA
4634243 4637396 - 3154 120401028 Mvan_R0041 - 23S ribosomal RNA
4637795 4639309 - 1515 120401028 Mvan_R0042 - 16S ribosomal RNA
4667130 4667205 + 76 120401028 Mvan_R0043 - 11 Arg tRNA
5081911 5081984 - 74 120401028 Mvan_R0045 - 15 Leu tRNA
5121881 5121952 + 72 120401028 Mvan_R0046 - 05 Gln tRNA
5168125 5168197 - 73 120401028 Mvan_R0047 - 02 Ala tRNA
5280480 5280552 + 73 120401028 Mvan_R0048 - 11 Arg tRNA
5446204 5446280 - 77 120401028 Mvan_R0050 - 17 Phe tRNA
5446322 5446398 - 77 120401028 Mvan_R0051 - 06 Asp tRNA
5446436 5446508 - 73 120401028 Mvan_R0052 - 04 Glu tRNA
5446639 5446714 + 76 120401028 Mvan_R0053 - 10 Lys tRNA
5540909 5540983 + 75 120401028 Mvan_R0054 - 12 Thr tRNA
5774047 5774122 - 76 120401028 Mvan_R0056 - 12 Thr tRNA
5824010 5824083 + 74 120401028 Mvan_R0057 - 03 Pro tRNA
5916780 5916872 - 93 120401028 Mvan_R0058 - SRP RNA; RNA component of signal recognition particle
5916968 5917053 + 86 120401028 Mvan_R0059 - 08 Ser tRNA
5973771 5973861 - 91 120401028 Mvan_R0060 - 08 Ser tRNA
5988436 5988508 - 73 120401028 Mvan_R0061 - 11 Arg tRNA
5988559 5988647 - 89 120401028 Mvan_R0062 - 08 Ser tRNA
5991145 5991231 - 87 120401028 Mvan_R0063 - 08 Ser tRNA
6252241 6252307 + 67 120401028 Mvan_R0064 - 14 Ile tRNA