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Геном прокариот/Материалы:NC 008752

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   LOCUS       NC_008752            5352772 bp    DNA     circular BCT 05-JAN-2007
   DEFINITION  Acidovorax avenae subsp. citrulli AAC00-1, complete genome.
   ACCESSION   NC_008752
   VERSION     NC_008752.1  GI:120608714
   KEYWORDS    .
   SOURCE      Acidovorax avenae subsp. citrulli AAC00-1
     ORGANISM  Acidovorax avenae subsp. citrulli AAC00-1
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Acidovorax.
   REFERENCE   1  (bases 1 to 5352772)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5352772)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5352772)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000512.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001427
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
421004 421079 + 76 120608714 Aave_R0001 - 11 Arg tRNA
678492 678568 + 77 120608714 Aave_R0002 - 16 Met tRNA
850157 850431 + 275 120608714 Aave_R0003 - RNase P
953378 953454 + 77 120608714 Aave_R0004 - 16 Met tRNA
1387775 1387859 + 85 120608714 Aave_R0005 - 15 Leu tRNA
1577962 1579483 + 1522 120608714 Aave_R0006 - 16S ribosomal RNA
1579555 1579631 + 77 120608714 Aave_R0007 - 14 Ile tRNA
1579663 1579738 + 76 120608714 Aave_R0008 - 02 Ala tRNA
1580100 1582980 + 2881 120608714 Aave_R0009 - 23S ribosomal RNA
1583093 1583205 + 113 120608714 Aave_R0010 - 5S ribosomal RNA
1604244 1604319 - 76 120608714 Aave_R0011 - 01 Gly tRNA
1604432 1604505 - 74 120608714 Aave_R0012 - 19 Cys tRNA
1604561 1604636 - 76 120608714 Aave_R0013 - 01 Gly tRNA
1610765 1610851 - 87 120608714 Aave_R0014 - 15 Leu tRNA
1643270 1643361 + 92 120608714 Aave_R0015 - 15 Leu tRNA
1756051 1756127 + 77 120608714 Aave_R0016 - 13 Val tRNA
1828502 1828577 + 76 120608714 Aave_R0017 - 13 Val tRNA
1897374 1897449 + 76 120608714 Aave_R0018 - 09 His tRNA
1920321 1920397 + 77 120608714 Aave_R0019 - 16 Met tRNA
1945301 1945377 - 77 120608714 Aave_R0020 - 11 Arg tRNA
1997788 1997863 - 76 120608714 Aave_R0021 - 12 Thr tRNA
2021784 2021859 + 76 120608714 Aave_R0022 - 02 Ala tRNA
2021892 2021967 + 76 120608714 Aave_R0023 - 04 Glu tRNA
2022020 2022096 + 77 120608714 Aave_R0024 - 06 Asp tRNA
2022170 2022245 + 76 120608714 Aave_R0025 - 02 Ala tRNA
2022279 2022354 + 76 120608714 Aave_R0026 - 04 Glu tRNA
2022406 2022482 + 77 120608714 Aave_R0027 - 06 Asp tRNA
2068771 2068846 - 76 120608714 Aave_R0028 - 10 Lys tRNA
2156283 2156367 - 85 120608714 Aave_R0029 - 15 Leu tRNA
2554319 2554411 + 93 120608714 Aave_R0030 - 08 Ser tRNA
2673714 2673788 + 75 120608714 Aave_R0031 - 13 Val tRNA
2673833 2673907 + 75 120608714 Aave_R0032 - 13 Val tRNA
2770121 2770194 - 74 120608714 Aave_R0033 - 01 Gly tRNA
2904776 2904876 - 101 120608714 Aave_R0034 - SRP RNA; RNA component of signal recognition particle
3143442 3143518 - 77 120608714 Aave_R0035 - 03 Pro tRNA
3243131 3243207 - 77 120608714 Aave_R0036 - 03 Pro tRNA
3289237 3289321 + 85 120608714 Aave_R0037 - 15 Leu tRNA
3289523 3289607 + 85 120608714 Aave_R0038 - 15 Leu tRNA
3427982 3428057 + 76 120608714 Aave_R0039 - 07 Asn tRNA
3428117 3428192 + 76 120608714 Aave_R0040 - 07 Asn tRNA
3604592 3604681 + 90 120608714 Aave_R0041 - 08 Ser tRNA
3621588 3621963 - 376 120608714 Aave_R0042 -
3759486 3759561 - 76 120608714 Aave_R0043 - 10 Lys tRNA
3907100 3907187 + 88 120608714 Aave_R0044 - 08 Ser tRNA
3958339 3958415 - 77 120608714 Aave_R0045 - 11 Arg tRNA
3983496 3983572 + 77 120608714 Aave_R0046 - 05 Gln tRNA
4053448 4053524 + 77 120608714 Aave_R0047 - 03 Pro tRNA
4069768 4069843 - 76 120608714 Aave_R0048 - 12 Thr tRNA
4186414 4186503 - 90 120608714 Aave_R0049 - 08 Ser tRNA
4387507 4387581 + 75 120608714 Aave_R0050 - 11 Arg tRNA
4859361 4859473 - 113 120608714 Aave_R0051 - 5S ribosomal RNA
4859586 4862466 - 2881 120608714 Aave_R0052 - 23S ribosomal RNA
4862828 4862903 - 76 120608714 Aave_R0053 - 02 Ala tRNA
4862935 4863011 - 77 120608714 Aave_R0054 - 14 Ile tRNA
4863083 4864604 - 1522 120608714 Aave_R0055 - 16S ribosomal RNA
5027995 5028070 - 76 120608714 Aave_R0056 - 17 Phe tRNA
5046274 5046349 - 76 120608714 Aave_R0057 - 20 Trp tRNA
5047623 5047697 - 75 120608714 Aave_R0058 - 12 Thr tRNA
5047733 5047806 - 74 120608714 Aave_R0059 - 01 Gly tRNA
5047849 5047934 - 86 120608714 Aave_R0060 - 18 Tyr tRNA
5048074 5048186 - 113 120608714 Aave_R0061 - 5S ribosomal RNA
5048299 5051179 - 2881 120608714 Aave_R0062 - 23S ribosomal RNA
5051541 5051616 - 76 120608714 Aave_R0063 - 02 Ala tRNA
5051648 5051724 - 77 120608714 Aave_R0064 - 14 Ile tRNA
5051796 5053317 - 1522 120608714 Aave_R0065 - 16S ribosomal RNA