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Геном прокариот/Материалы:NC 008782

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   LOCUS       NC_008782            4448856 bp    DNA     circular BCT 11-JAN-2007
   DEFINITION  Acidovorax sp. JS42, complete genome.
   ACCESSION   NC_008782
   VERSION     NC_008782.1  GI:121592436
   KEYWORDS    .
   SOURCE      Acidovorax sp. JS42
     ORGANISM  Acidovorax sp. JS42
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Acidovorax.
   REFERENCE   1  (bases 1 to 4448856)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Acidovorax sp. JS42
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4448856)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4448856)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000539.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001426
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
333762 333837 + 76 121592436 Ajs_R0001 - 11 Arg tRNA
414117 414193 + 77 121592436 Ajs_R0002 - 16 Met tRNA
836662 836737 + 76 121592436 Ajs_R0003 - 12 Thr tRNA
887009 887085 - 77 121592436 Ajs_R0004 - 03 Pro tRNA
944869 944945 - 77 121592436 Ajs_R0005 - 05 Gln tRNA
992918 992994 - 77 121592436 Ajs_R0006 - 11 Arg tRNA
998729 998813 + 85 121592436 Ajs_R0007 - 15 Leu tRNA
1158744 1158831 - 88 121592436 Ajs_R0008 - 08 Ser tRNA
1248578 1250099 + 1522 121592436 Ajs_R0009 - 16S ribosomal RNA
1250181 1250257 + 77 121592436 Ajs_R0010 - 14 Ile tRNA
1250292 1250367 + 76 121592436 Ajs_R0011 - 02 Ala tRNA
1250707 1253585 + 2879 121592436 Ajs_R0012 - 23S ribosomal RNA
1253703 1253815 + 113 121592436 Ajs_R0013 - 5S ribosomal RNA
1281620 1281706 + 87 121592436 Ajs_R0014 - 15 Leu tRNA
1287848 1287923 + 76 121592436 Ajs_R0015 - 01 Gly tRNA
1408450 1408523 + 74 121592436 Ajs_R0016 - 19 Cys tRNA
1408638 1408713 + 76 121592436 Ajs_R0017 - 01 Gly tRNA
1659919 1659994 + 76 121592436 Ajs_R0018 - 02 Ala tRNA
1660026 1660101 + 76 121592436 Ajs_R0019 - 04 Glu tRNA
1660159 1660235 + 77 121592436 Ajs_R0020 - 06 Asp tRNA
1684418 1684510 + 93 121592436 Ajs_R0021 - 08 Ser tRNA
1735478 1735554 + 77 121592436 Ajs_R0022 - 03 Pro tRNA
1795778 1795853 + 76 121592436 Ajs_R0023 - 10 Lys tRNA
1870836 1870925 + 90 121592436 Ajs_R0024 - 08 Ser tRNA
2077471 2077544 - 74 121592436 Ajs_R0025 - 01 Gly tRNA
2261208 2261282 - 75 121592436 Ajs_R0026 - 13 Val tRNA
2261322 2261396 - 75 121592436 Ajs_R0027 - 13 Val tRNA
2435001 2435076 + 76 121592436 Ajs_R0028 - 07 Asn tRNA
2435129 2435204 + 76 121592436 Ajs_R0029 - 07 Asn tRNA
2494212 2494312 + 101 121592436 Ajs_R0030 - SRP RNA
2545780 2545856 - 77 121592436 Ajs_R0031 - 03 Pro tRNA
2618142 2618517 - 376 121592436 Ajs_R0032 - tmRNA
2734229 2734313 + 85 121592436 Ajs_R0033 - 15 Leu tRNA
2734494 2734578 + 85 121592436 Ajs_R0034 - 15 Leu tRNA
2779715 2779791 + 77 121592436 Ajs_R0035 - 11 Arg tRNA
2791155 2791230 - 76 121592436 Ajs_R0036 - 09 His tRNA
2793262 2793337 - 76 121592436 Ajs_R0037 - 13 Val tRNA
2895213 2895289 - 77 121592436 Ajs_R0038 - 06 Asp tRNA
2895336 2895411 - 76 121592436 Ajs_R0039 - 04 Glu tRNA
2895444 2895519 - 76 121592436 Ajs_R0040 - 02 Ala tRNA
2923874 2923949 + 76 121592436 Ajs_R0041 - 12 Thr tRNA
3328249 3328325 - 77 121592436 Ajs_R0042 - 13 Val tRNA
3523853 3523928 + 76 121592436 Ajs_R0043 - 10 Lys tRNA
3633028 3633117 - 90 121592436 Ajs_R0044 - 08 Ser tRNA
3754391 3754465 + 75 121592436 Ajs_R0045 - 11 Arg tRNA
3828784 3828860 + 77 121592436 Ajs_R0046 - 16 Met tRNA
3943283 3943561 - 279 121592436 Ajs_R0047 - RNaseP RNA
4015747 4015879 - 133 121592436 Ajs_R0048 - 5S ribosomal RNA
4015997 4018875 - 2879 121592436 Ajs_R0049 - 23S ribosomal RNA
4019215 4019290 - 76 121592436 Ajs_R0050 - 02 Ala tRNA
4019325 4019401 - 77 121592436 Ajs_R0051 - 14 Ile tRNA
4019483 4021004 - 1522 121592436 Ajs_R0052 - 16S ribosomal RNA
4132026 4132101 - 76 121592436 Ajs_R0053 - 17 Phe tRNA
4150130 4150205 - 76 121592436 Ajs_R0054 - 20 Trp tRNA
4151487 4151561 - 75 121592436 Ajs_R0055 - 12 Thr tRNA
4151603 4151676 - 74 121592436 Ajs_R0056 - 01 Gly tRNA
4151725 4151810 - 86 121592436 Ajs_R0057 - 18 Tyr tRNA
4153495 4153607 - 113 121592436 Ajs_R0058 - 5S ribosomal RNA
4153725 4156603 - 2879 121592436 Ajs_R0059 - 23S ribosomal RNA
4156943 4157018 - 76 121592436 Ajs_R0060 - 02 Ala tRNA
4157053 4157129 - 77 121592436 Ajs_R0061 - 14 Ile tRNA
4157211 4158732 - 1522 121592436 Ajs_R0062 - 16S ribosomal RNA
4301742 4301818 - 77 121592436 Ajs_R0064 - 11 Arg tRNA