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Геном прокариот/Материалы:NC 008786

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   LOCUS       NC_008786            5566749 bp    DNA     circular BCT 11-JAN-2007
   DEFINITION  Verminephrobacter eiseniae EF01-2, complete genome.
   ACCESSION   NC_008786
   VERSION     NC_008786.1  GI:121607004
   KEYWORDS    .
   SOURCE      Verminephrobacter eiseniae EF01-2
     ORGANISM  Verminephrobacter eiseniae EF01-2
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Verminephrobacter.
   REFERENCE   1  (bases 1 to 5566749)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Verminephrobacter eiseniae
               EF01-2
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5566749)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5566749)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000542.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001428
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
528385 528461 - 77 121607004 Veis_R0001 - 16 Met tRNA
578922 579022 + 101 121607004 Veis_R0002 - SRP RNA
738694 738785 + 92 121607004 Veis_R0003 - 15 Leu tRNA
1025203 1025315 - 113 121607004 Veis_R0004 - 5S ribosomal RNA
1025434 1028318 - 2885 121607004 Veis_R0005 - 23S ribosomal RNA
1028601 1028676 - 76 121607004 Veis_R0006 - 02 Ala tRNA
1028713 1028789 - 77 121607004 Veis_R0007 - 14 Ile tRNA
1028876 1030402 - 1527 121607004 Veis_R0008 - 16S ribosomal RNA
1065733 1065809 - 77 121607004 Veis_R0009 - 05 Gln tRNA
1127458 1127533 + 76 121607004 Veis_R0010 - 10 Lys tRNA
1139359 1139443 - 85 121607004 Veis_R0011 - 15 Leu tRNA
1169986 1170062 - 77 121607004 Veis_R0012 - 16 Met tRNA
1580034 1580118 - 85 121607004 Veis_R0013 - 15 Leu tRNA
1760583 1760658 - 76 121607004 Veis_R0014 - 10 Lys tRNA
1920799 1920888 - 90 121607004 Veis_R0015 - 08 Ser tRNA
1980681 1982207 + 1527 121607004 Veis_R0016 - 16S ribosomal RNA
1982294 1982370 + 77 121607004 Veis_R0017 - 14 Ile tRNA
1982407 1982482 + 76 121607004 Veis_R0018 - 02 Ala tRNA
1982765 1985649 + 2885 121607004 Veis_R0019 - 23S ribosomal RNA
1985768 1985880 + 113 121607004 Veis_R0020 - 5S ribosomal RNA
2015009 2015085 - 77 121607004 Veis_R0021 - 03 Pro tRNA
2076006 2076082 - 77 121607004 Veis_R0022 - 11 Arg tRNA
2120629 2120895 - 267 121607004 Veis_R0023 - RNase P
2557341 2557416 + 76 121607004 Veis_R0024 - 11 Arg tRNA
2557498 2557583 + 86 121607004 Veis_R0025 - 18 Tyr tRNA
2557626 2557699 + 74 121607004 Veis_R0026 - 01 Gly tRNA
2557778 2557852 + 75 121607004 Veis_R0027 - 12 Thr tRNA
2559134 2559209 + 76 121607004 Veis_R0028 - 20 Trp tRNA
2609490 2609566 - 77 121607004 Veis_R0029 - 16 Met tRNA
2691773 2691847 + 75 121607004 Veis_R0030 - 13 Val tRNA
3038919 3038994 - 76 121607004 Veis_R0031 - 09 His tRNA
3041148 3041223 - 76 121607004 Veis_R0032 - 13 Val tRNA
3162439 3162523 - 85 121607004 Veis_R0033 - 15 Leu tRNA
3232613 3232689 + 77 121607004 Veis_R0034 - 11 Arg tRNA
3398621 3398694 - 74 121607004 Veis_R0035 - 01 Gly tRNA
3447533 3447609 + 77 121607004 Veis_R0036 - 03 Pro tRNA
3461616 3461999 - 384 121607004 Veis_R0037 - tmRNA
3516298 3516410 - 113 121607004 Veis_R0038 - 5S ribosomal RNA
3516529 3519413 - 2885 121607004 Veis_R0039 - 23S ribosomal RNA
3519696 3519771 - 76 121607004 Veis_R0040 - 02 Ala tRNA
3519808 3519884 - 77 121607004 Veis_R0041 - 14 Ile tRNA
3519971 3521497 - 1527 121607004 Veis_R0042 - 16S ribosomal RNA
3550399 3550474 + 76 121607004 Veis_R0043 - 12 Thr tRNA
3741704 3741780 - 77 121607004 Veis_R0044 - 06 Asp tRNA
3741833 3741908 - 76 121607004 Veis_R0045 - 04 Glu tRNA
3741960 3742035 - 76 121607004 Veis_R0046 - 02 Ala tRNA
3873822 3873911 + 90 121607004 Veis_R0047 - 08 Ser tRNA
3997033 3997108 + 76 121607004 Veis_R0048 - 07 Asn tRNA
4006953 4007028 + 76 121607004 Veis_R0049 - 07 Asn tRNA
4038941 4039030 + 90 121607004 Veis_R0050 - 08 Ser tRNA
4306301 4306377 + 77 121607004 Veis_R0052 - 03 Pro tRNA
4319281 4319356 - 76 121607004 Veis_R0053 - 12 Thr tRNA
4815696 4815772 + 77 121607004 Veis_R0054 - 13 Val tRNA
4818443 4818529 + 87 121607004 Veis_R0055 - 15 Leu tRNA
4824630 4824705 + 76 121607004 Veis_R0056 - 01 Gly tRNA
4824765 4824835 + 71 121607004 Veis_R0057 - 19 Cys tRNA
5037284 5037358 + 75 121607004 Veis_R0058 - 11 Arg tRNA
5205301 5205376 - 76 121607004 Veis_R0059 - 17 Phe tRNA
5461155 5461247 + 93 121607004 Veis_R0060 - 08 Ser tRNA