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Геном прокариот/Материалы:NC 008789

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   LOCUS       NC_008789            2678452 bp    DNA     circular BCT 13-JAN-2007
   DEFINITION  Halorhodospira halophila SL1, complete genome.
   ACCESSION   NC_008789
   VERSION     NC_008789.1  GI:121996810
   KEYWORDS    .
   SOURCE      Halorhodospira halophila SL1
     ORGANISM  Halorhodospira halophila SL1
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Ectothiorhodospiraceae; Halorhodospira.
   REFERENCE   1  (bases 1 to 2678452)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Halorhodospira halophila SL1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2678452)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2678452)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000544.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000187
               Source DNA and bacteria available from Wouter Hoff
               (whoff@midway.uchicago.edu)
               Contacts: Wouter Hoff (whoff@midway.uchicago.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
22358 22431 + 74 121996810 Hhal_R0001 - 19 Cys tRNA
22494 22578 + 85 121996810 Hhal_R0002 - 15 Leu tRNA
119800 119876 - 77 121996810 Hhal_R0003 - 04 Glu tRNA
234447 234536 - 90 121996810 Hhal_R0004 - 08 Ser tRNA
267061 267178 - 118 121996810 Hhal_R0005 - SRP RNA
267185 267272 - 88 121996810 Hhal_R0006 - 08 Ser tRNA
376737 376853 - 117 121996810 Hhal_R0007 - 5S ribosomal RNA
376939 379842 - 2904 121996810 Hhal_R0008 - 23S ribosomal RNA
380025 381562 - 1538 121996810 Hhal_R0009 - 16S ribosomal RNA
494451 494527 + 77 121996810 Hhal_R0010 - 13 Val tRNA
501892 501968 + 77 121996810 Hhal_R0011 - 03 Pro tRNA
614224 614298 + 75 121996810 Hhal_R0012 - 07 Asn tRNA
677797 677873 - 77 121996810 Hhal_R0013 - 06 Asp tRNA
677921 677996 - 76 121996810 Hhal_R0014 - 13 Val tRNA
684545 684634 - 90 121996810 Hhal_R0015 - 15 Leu tRNA
689998 690074 + 77 121996810 Hhal_R0016 - 03 Pro tRNA
690116 690192 + 77 121996810 Hhal_R0017 - 11 Arg tRNA
690228 690303 + 76 121996810 Hhal_R0018 - 09 His tRNA
690405 690480 + 76 121996810 Hhal_R0019 - 10 Lys tRNA
742426 742512 + 87 121996810 Hhal_R0020 - 15 Leu tRNA
760849 760923 + 75 121996810 Hhal_R0021 - 04 Glu tRNA
816303 816378 + 76 121996810 Hhal_R0022 - 02 Ala tRNA
824039 824115 - 77 121996810 Hhal_R0023 - 11 Arg tRNA
944492 944567 - 76 121996810 Hhal_R0024 - 20 Trp tRNA
945881 945956 - 76 121996810 Hhal_R0025 - 12 Thr tRNA
945995 946068 - 74 121996810 Hhal_R0026 - 01 Gly tRNA
946130 946214 - 85 121996810 Hhal_R0027 - 18 Tyr tRNA
946263 946338 - 76 121996810 Hhal_R0028 - 12 Thr tRNA
948747 948863 - 117 121996810 Hhal_R0029 - 5S ribosomal RNA
948948 951851 - 2904 121996810 Hhal_R0030 - 23S ribosomal RNA
952021 952096 - 76 121996810 Hhal_R0031 - 02 Ala tRNA
952108 952184 - 77 121996810 Hhal_R0032 - 14 Ile tRNA
952248 953785 - 1538 121996810 Hhal_R0033 - 16S ribosomal RNA
1058093 1058169 - 77 121996810 Hhal_R0034 - 16 Met tRNA
1062168 1062242 - 75 121996810 Hhal_R0035 - 05 Gln tRNA
1194816 1194891 + 76 121996810 Hhal_R0036 - 16 Met tRNA
1237862 1237938 - 77 121996810 Hhal_R0037 - 11 Arg tRNA
1242463 1242538 + 76 121996810 Hhal_R0038 - 17 Phe tRNA
1386854 1386929 - 76 121996810 Hhal_R0039 - 02 Ala tRNA
1388532 1388606 + 75 121996810 Hhal_R0040 - 13 Val tRNA
1605457 1605810 + 354 121996810 Hhal_R0042 - tmRNA
1721851 1721927 - 77 121996810 Hhal_R0043 - 16 Met tRNA
1803569 1803645 - 77 121996810 Hhal_R0044 - 11 Arg tRNA
1803697 1803786 - 90 121996810 Hhal_R0045 - 08 Ser tRNA
1877309 1877394 + 86 121996810 Hhal_R0046 - 15 Leu tRNA
1924613 1924689 - 77 121996810 Hhal_R0047 - 16 Met tRNA
1939575 1939659 - 85 121996810 Hhal_R0048 - 15 Leu tRNA
1998217 1998292 + 76 121996810 Hhal_R0049 - 12 Thr tRNA
2020663 2020739 - 77 121996810 Hhal_R0050 - 03 Pro tRNA
2046979 2047067 + 89 121996810 Hhal_R0051 - 08 Ser tRNA
2280907 2280980 - 74 121996810 Hhal_R0052 - 05 Gln tRNA
2306516 2306817 + 302 121996810 Hhal_R0053 - RnaseP RNA
2348651 2348725 - 75 121996810 Hhal_R0054 - 01 Gly tRNA
2433936 2434008 + 73 121996810 Hhal_R0055 - 10 Lys tRNA
2637699 2637772 + 74 121996810 Hhal_R0057 - 01 Gly tRNA