Геном прокариот/Материалы:NC 009089
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Базовый уровень статей |
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LOCUS NC_009089 4290252 bp DNA circular BCT 14-AUG-2007
DEFINITION Clostridium difficile 630, complete genome.
ACCESSION NC_009089
VERSION NC_009089.1 GI:126697566
KEYWORDS complete genome.
SOURCE Clostridium difficile 630
ORGANISM Clostridium difficile 630
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Clostridium.
REFERENCE 1
AUTHORS Sebaihia,M., Wren,B.W., Mullany,P., Fairweather,N.F., Minton,N.,
Stabler,R., Thomson,N.R., Roberts,A.P., Cerdeno-Tarraga,A.M.,
Wang,H., Holden,M.T., Wright,A., Churcher,C., Quail,M.A., Baker,S.,
Bason,N., Brooks,K., Chillingworth,T., Cronin,A., Davis,P.,
Dowd,L., Fraser,A., Feltwell,T., Hance,Z., Holroyd,S., Jagels,K.,
Moule,S., Mungall,K., Price,C., Rabbinowitsch,E., Sharp,S.,
Simmonds,M., Stevens,K., Unwin,L., Whithead,S., Dupuy,B.,
Dougan,G., Barrell,B. and Parkhill,J.
TITLE The multidrug-resistant human pathogen Clostridium difficile has a
highly mobile, mosaic genome
JOURNAL Nat. Genet. 38 (7), 779-786 (2006)
PUBMED 16804543
REFERENCE 2
AUTHORS Sebaihia,M.
TITLE The multidrug resistant human pathogen Clostridium difficile has a
highly mobile, mosaic genome
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4290252)
AUTHORS Sebaihia,M.
TITLE Direct Submission
JOURNAL Submitted (19-DEC-2005) Sebaihia M., Sulston Laboratories, Wellcome
Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton,
Cambridge, CB10 1SA, UNITED KINGDOM
REFERENCE 4 (bases 1 to 4290252)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (21-JAN-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AM180355.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 10812 | 12318 | + | 1507 | 126697566 | CDr001 | - | 16S ribosomal RNA |
| 12372 | 12444 | + | 73 | 126697566 | CDt001 | - | Anticodon: TGC |
| 12822 | 15720 | + | 2899 | 126697566 | CDr002 | - | 23S ribosomal RNA |
| 15839 | 15968 | + | 130 | 126697566 | CDr003 | - | 5S ribosomal RNA |
| 17634 | 17855 | + | 222 | 126697566 | CDs001 | - | |
| 20000 | 20088 | + | 89 | 126697566 | CDt002 | - | Anticodon: GGA |
| 20243 | 20343 | + | 101 | 126697566 | CDs002 | - | |
| 25267 | 26773 | + | 1507 | 126697566 | CDr004 | - | 16S ribosomal RNA |
| 27034 | 29932 | + | 2899 | 126697566 | CDr005 | - | 23S ribosomal RNA |
| 30115 | 30233 | + | 119 | 126697566 | CDr006 | - | 5S ribosomal RNA |
| 30237 | 30308 | + | 72 | 126697566 | CDt003 | - | Anticodon: GTT |
| 30318 | 30403 | + | 86 | 126697566 | CDt004 | - | Anticodon: TAA |
| 30419 | 30491 | + | 73 | 126697566 | CDt005 | - | Anticodon: CAT |
| 30502 | 30573 | + | 72 | 126697566 | CDt006 | - | Anticodon: TTC |
| 30586 | 30656 | + | 71 | 126697566 | CDt007 | - | Anticodon: TCC |
| 30665 | 30737 | + | 73 | 126697566 | CDt008 | - | Anticodon: TAC |
| 30746 | 30819 | + | 74 | 126697566 | CDt009 | - | Anticodon: GTC |
| 30832 | 30903 | + | 72 | 126697566 | CDt010 | - | Anticodon: TGT |
| 30921 | 31002 | + | 82 | 126697566 | CDt011 | - | Anticodon: GTA |
| 31015 | 31095 | + | 81 | 126697566 | CDt012 | - | Anticodon: TAG |
| 31128 | 31201 | + | 74 | 126697566 | CDt013 | - | Anticodon: TCT |
| 31212 | 31284 | + | 73 | 126697566 | CDt014 | - | Anticodon: TTG |
| 31375 | 31460 | + | 86 | 126697566 | CDt015 | - | Anticodon: TGA |
| 31467 | 31539 | + | 73 | 126697566 | CDt016 | - | Anticodon: GAA |
| 31549 | 31622 | + | 74 | 126697566 | CDt017 | - | Anticodon: CAT |
| 31637 | 31710 | + | 74 | 126697566 | CDt018 | - | Anticodon: CAT |
| 31737 | 31810 | + | 74 | 126697566 | CDt019 | - | Anticodon: TGG |
| 31821 | 31894 | + | 74 | 126697566 | CDt020 | - | Anticodon: GTG |
| 31906 | 31978 | + | 73 | 126697566 | CDt021 | - | Anticodon: TTT |
| 31989 | 32059 | + | 71 | 126697566 | CDt022 | - | Anticodon: GCA |
| 32069 | 32140 | + | 72 | 126697566 | CDt023 | - | Anticodon: GTT |
| 32149 | 32234 | + | 86 | 126697566 | CDt024 | - | Anticodon: TAA |
| 32250 | 32322 | + | 73 | 126697566 | CDt025 | - | Anticodon: CAT |
| 32333 | 32404 | + | 72 | 126697566 | CDt026 | - | Anticodon: TTC |
| 32417 | 32487 | + | 71 | 126697566 | CDt027 | - | Anticodon: TCC |
| 32496 | 32568 | + | 73 | 126697566 | CDt028 | - | Anticodon: TAC |
| 32577 | 32650 | + | 74 | 126697566 | CDt029 | - | Anticodon: GTC |
| 32663 | 32734 | + | 72 | 126697566 | CDt030 | - | Anticodon: TGT |
| 32752 | 32833 | + | 82 | 126697566 | CDt031 | - | Anticodon: GTA |
| 32846 | 32926 | + | 81 | 126697566 | CDt032 | - | Anticodon: TAG |
| 32953 | 33024 | + | 72 | 126697566 | CDt033 | - | Anticodon: GCC |
| 33052 | 33125 | + | 74 | 126697566 | CDt034 | - | Anticodon: TCT |
| 33138 | 33210 | + | 73 | 126697566 | CDt035 | - | Anticodon: TTG |
| 33222 | 33294 | + | 73 | 126697566 | CDt036 | - | Anticodon: TTT |
| 33300 | 33385 | + | 86 | 126697566 | CDt037 | - | Anticodon: TGA |
| 33392 | 33464 | + | 73 | 126697566 | CDt038 | - | Anticodon: GAA |
| 33474 | 33547 | + | 74 | 126697566 | CDt039 | - | Anticodon: CAT |
| 33562 | 33635 | + | 74 | 126697566 | CDt040 | - | Anticodon: CAT |
| 33656 | 33729 | + | 74 | 126697566 | CDt041 | - | Anticodon: GTG |
| 33741 | 33813 | + | 73 | 126697566 | CDt042 | - | Anticodon: TTT |
| 33824 | 33894 | + | 71 | 126697566 | CDt043 | - | Anticodon: GCA |
| 33905 | 33978 | + | 74 | 126697566 | CDt044 | - | Anticodon: ACG |
| 33994 | 34066 | + | 73 | 126697566 | CDt045 | - | Anticodon: TAC |
| 73019 | 73242 | + | 224 | 126697566 | CDs003 | - | |
| 124152 | 125658 | + | 1507 | 126697566 | CDr007 | - | 16S ribosomal RNA |
| 125712 | 125784 | + | 73 | 126697566 | CDt046 | - | Anticodon: TGC |
| 126161 | 129059 | + | 2899 | 126697566 | CDr008 | - | 23S ribosomal RNA |
| 129193 | 129311 | + | 119 | 126697566 | CDr009 | - | 5S ribosomal RNA |
| 129315 | 129386 | + | 72 | 126697566 | CDt047 | - | Anticodon: GTT |
| 129394 | 129465 | + | 72 | 126697566 | CDt048 | - | Anticodon: TTC |
| 129474 | 129546 | + | 73 | 126697566 | CDt049 | - | Anticodon: TAC |
| 129555 | 129628 | + | 74 | 126697566 | CDt050 | - | Anticodon: GTC |
| 129642 | 129713 | + | 72 | 126697566 | CDt051 | - | Anticodon: TGT |
| 129731 | 129812 | + | 82 | 126697566 | CDt052 | - | Anticodon: GTA |
| 129825 | 129895 | + | 71 | 126697566 | CDt053 | - | Anticodon: TCC |
| 129909 | 129982 | + | 74 | 126697566 | CDt054 | - | Anticodon: TCT |
| 129995 | 130067 | + | 73 | 126697566 | CDt055 | - | Anticodon: TTG |
| 130082 | 130154 | + | 73 | 126697566 | CDt056 | - | Anticodon: TTT |
| 130160 | 130245 | + | 86 | 126697566 | CDt057 | - | Anticodon: TGA |
| 130266 | 130353 | + | 88 | 126697566 | CDt058 | - | Anticodon: GCT |
| 130365 | 130438 | + | 74 | 126697566 | CDt059 | - | Anticodon: TGG |
| 130527 | 130599 | + | 73 | 126697566 | CDt060 | - | Anticodon: CCA |
| 130663 | 130736 | + | 74 | 126697566 | CDt061 | - | Anticodon: TGG |
| 130746 | 130819 | + | 74 | 126697566 | CDt062 | - | Anticodon: GAT |
| 130826 | 130898 | + | 73 | 126697566 | CDt063 | - | Anticodon: GAA |
| 130909 | 130982 | + | 74 | 126697566 | CDt064 | - | Anticodon: CAT |
| 131099 | 132605 | + | 1507 | 126697566 | CDr010 | - | 16S ribosomal RNA |
| 132659 | 132731 | + | 73 | 126697566 | CDt065 | - | Anticodon: TGC |
| 133108 | 136006 | + | 2899 | 126697566 | CDr011 | - | 23S ribosomal RNA |
| 136134 | 136253 | + | 120 | 126697566 | CDr012 | - | 5S ribosomal RNA |
| 141709 | 143215 | + | 1507 | 126697566 | CDr013 | - | 16S ribosomal RNA |
| 143269 | 143341 | + | 73 | 126697566 | CDt066 | - | Anticodon: TGC |
| 143657 | 146555 | + | 2899 | 126697566 | CDr014 | - | 23S ribosomal RNA |
| 146758 | 146877 | + | 120 | 126697566 | CDr015 | - | 5S ribosomal RNA |
| 146879 | 146964 | + | 86 | 126697566 | CDt067 | - | Anticodon: TAA |
| 146979 | 147052 | + | 74 | 126697566 | CDt068 | - | Anticodon: CAT |
| 147164 | 148670 | + | 1507 | 126697566 | CDr016 | - | 16S ribosomal RNA |
| 148724 | 148796 | + | 73 | 126697566 | CDt069 | - | Anticodon: TGC |
| 149051 | 151949 | + | 2899 | 126697566 | CDr017 | - | 23S ribosomal RNA |
| 152068 | 152197 | + | 130 | 126697566 | CDr018 | - | 5S ribosomal RNA |
| 152201 | 152272 | + | 72 | 126697566 | CDt070 | - | Anticodon: GTT |
| 152281 | 152366 | + | 86 | 126697566 | CDt071 | - | Anticodon: TAA |
| 152382 | 152454 | + | 73 | 126697566 | CDt072 | - | Anticodon: CAT |
| 152465 | 152536 | + | 72 | 126697566 | CDt073 | - | Anticodon: TTC |
| 152554 | 152624 | + | 71 | 126697566 | CDt074 | - | Anticodon: TCC |
| 152633 | 152705 | + | 73 | 126697566 | CDt075 | - | Anticodon: TAC |
| 152714 | 152787 | + | 74 | 126697566 | CDt076 | - | Anticodon: GTC |
| 152801 | 152872 | + | 72 | 126697566 | CDt077 | - | Anticodon: GCC |
| 152885 | 152958 | + | 74 | 126697566 | CDt078 | - | Anticodon: TCT |
| 163160 | 163327 | + | 168 | 126697566 | CDs004 | - | |
| 174147 | 174250 | + | 104 | 126697566 | CDs005 | - | |
| 196732 | 196849 | + | 118 | 126697566 | CDs006 | - | |
| 256217 | 256319 | + | 103 | 126697566 | CDs007 | - | |
| 377339 | 378845 | + | 1507 | 126697566 | CDr019 | - | 16S ribosomal RNA |
| 379066 | 381964 | + | 2899 | 126697566 | CDr020 | - | 23S ribosomal RNA |
| 382093 | 382212 | + | 120 | 126697566 | CDr021 | - | 5S ribosomal RNA |
| 391011 | 391203 | + | 193 | 126697566 | CDs008 | - | |
| 596106 | 596592 | + | 487 | 126697566 | CDs009 | - | |
| 596597 | 596675 | + | 79 | 126697566 | CDs010 | - | |
| 596684 | 596734 | + | 51 | 126697566 | CDs011 | - | |
| 598650 | 598660 | + | 11 | 126697566 | CDs012 | - | |
| 598662 | 598746 | + | 85 | 126697566 | CDs013 | - | |
| 598664 | 598697 | + | 34 | 126697566 | CDs014 | - | |
| 598701 | 598743 | + | 43 | 126697566 | CDs015 | - | |
| 683173 | 683427 | + | 255 | 126697566 | CDs016 | - | |
| 727944 | 728413 | + | 470 | 126697566 | CDs017 | - | |
| 849440 | 849690 | + | 251 | 126697566 | CDs018 | - | |
| 907922 | 908009 | + | 88 | 126697566 | CDt079 | - | Anticodon: GCT |
| 917371 | 917598 | + | 228 | 126697566 | CDs019 | - | |
| 990470 | 990939 | + | 470 | 126697566 | CDs020 | - | |
| 1152624 | 1152886 | + | 263 | 126697566 | CDs021 | - | |
| 1209213 | 1210719 | + | 1507 | 126697566 | CDr022 | - | 16S ribosomal RNA |
| 1211104 | 1214003 | + | 2900 | 126697566 | CDr023 | - | 23S ribosomal RNA |
| 1214096 | 1214166 | + | 71 | 126697566 | CDt080 | - | Anticodon: TCC |
| 1214179 | 1214298 | + | 120 | 126697566 | CDr024 | - | 5S ribosomal RNA |
| 1326335 | 1326419 | - | 85 | 126697566 | CDt081 | - | Anticodon: CAA |
| 1364065 | 1364171 | + | 107 | 126697566 | CDs022 | - | |
| 1488489 | 1488742 | + | 254 | 126697566 | CDs023 | - | |
| 1521545 | 1522014 | + | 470 | 126697566 | CDs024 | - | |
| 1724139 | 1724245 | + | 107 | 126697566 | CDs025 | - | |
| 1736753 | 1737222 | + | 470 | 126697566 | CDs026 | - | |
| 1762889 | 1763157 | + | 269 | 126697566 | CDs027 | - | |
| 1810573 | 1810861 | + | 289 | 126697566 | CDs028 | - | |
| 1818880 | 1819348 | + | 469 | 126697566 | CDs029 | - | |
| 1830948 | 1831204 | + | 257 | 126697566 | CDs030 | - | |
| 1831254 | 1831505 | + | 252 | 126697566 | CDs031 | - | |
| 1854584 | 1854677 | + | 94 | 126697566 | CDs032 | - | |
| 1917499 | 1917604 | - | 106 | 126697566 | CDs033 | - | |
| 1918846 | 1919022 | + | 177 | 126697566 | CDs034 | - | |
| 1921006 | 1921086 | + | 81 | 126697566 | CDt082 | - | Anticodon: TAG |
| 1930135 | 1930604 | + | 470 | 126697566 | CDs035 | - | |
| 1973231 | 1973352 | - | 122 | 126697566 | CDs036 | - | |
| 1976113 | 1976224 | + | 112 | 126697566 | CDs037 | - | |
| 1992919 | 1993388 | + | 470 | 126697566 | CDs038 | - | |
| 2055462 | 2055740 | + | 279 | 126697566 | CDs039 | - | |
| 2066659 | 2066883 | + | 225 | 126697566 | CDs040 | - | |
| 2102880 | 2103349 | + | 470 | 126697566 | CDs041 | - | |
| 2110692 | 2110794 | + | 103 | 126697566 | CDs042 | - | |
| 2285202 | 2285301 | - | 100 | 126697566 | CDs043 | - | |
| 2294385 | 2294663 | - | 279 | 126697566 | CDs044 | - | |
| 2347170 | 2347400 | - | 231 | 126697566 | CDs045 | - | |
| 2368975 | 2369143 | - | 169 | 126697566 | CDs046 | - | |
| 2436110 | 2436208 | - | 99 | 126697566 | CDs047 | - | |
| 2451328 | 2451572 | + | 245 | 126697566 | CDs048 | - | |
| 2598418 | 2598668 | - | 251 | 126697566 | CDs049 | - | |
| 2694683 | 2694785 | - | 103 | 126697566 | CDs050 | - | |
| 2886067 | 2886295 | - | 229 | 126697566 | CDs051 | - | |
| 2915733 | 2915947 | - | 215 | 126697566 | CDs052 | - | |
| 2954861 | 2955331 | - | 471 | 126697566 | CDs053 | - | |
| 3017752 | 3018007 | - | 256 | 126697566 | CDs054 | - | |
| 3027704 | 3027953 | - | 250 | 126697566 | CDs055 | - | |
| 3114793 | 3115065 | - | 273 | 126697566 | CDs056 | - | |
| 3148001 | 3148211 | - | 211 | 126697566 | CDs057 | - | |
| 3149218 | 3149289 | - | 72 | 126697566 | CDt083 | - | Anticodon: TGT |
| 3149385 | 3152283 | - | 2899 | 126697566 | CDr025 | - | 23S ribosomal RNA |
| 3152566 | 3154072 | - | 1507 | 126697566 | CDr026 | - | 16S ribosomal RNA |
| 3484931 | 3485112 | - | 182 | 126697566 | CDs058 | - | |
| 3607770 | 3607949 | - | 180 | 126697566 | CDs059 | - | |
| 3687389 | 3687738 | - | 350 | 126697566 | CDs060 | - | |
| 3773053 | 3773227 | + | 175 | 126697566 | CDs061 | - | |
| 3800624 | 3801050 | - | 427 | 126697566 | CDs062 | - | |
| 3800718 | 3800825 | - | 108 | 126697566 | CDs063 | - | |
| 3861645 | 3861760 | + | 116 | 126697566 | CDs064 | - | |
| 4004287 | 4004406 | - | 120 | 126697566 | CDr027 | - | 5S ribosomal RNA |
| 4004533 | 4007432 | - | 2900 | 126697566 | CDr028 | - | 23S ribosomal RNA |
| 4007692 | 4009197 | - | 1506 | 126697566 | CDr029 | - | 16S ribosomal RNA |
| 4027376 | 4027555 | - | 180 | 126697566 | CDs065 | - | |
| 4136360 | 4136623 | - | 264 | 126697566 | CDs066 | - | |
| 4146943 | 4147062 | - | 120 | 126697566 | CDr030 | - | 5S ribosomal RNA |
| 4147189 | 4150087 | - | 2899 | 126697566 | CDr031 | - | 23S ribosomal RNA |
| 4150397 | 4151903 | - | 1507 | 126697566 | CDr032 | - | 16S ribosomal RNA |
| 4265536 | 4265607 | - | 72 | 126697566 | CDt084 | - | Anticodon: TGT |
| 4265644 | 4265716 | - | 73 | 126697566 | CDt085 | - | Anticodon: TAC |
| 4265724 | 4265795 | - | 72 | 126697566 | CDt086 | - | Anticodon: TTC |
| 4265805 | 4265877 | - | 73 | 126697566 | CDt087 | - | Anticodon: TTT |