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Геном прокариот/Материалы:NC 009138

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   LOCUS       NC_009138            3424307 bp    DNA     circular BCT 26-MAR-2007
   DEFINITION  Herminiimonas arsenicoxydans, complete genome.
   ACCESSION   NC_009138
   VERSION     NC_009138.1  GI:134093294
   KEYWORDS    .
   SOURCE      Herminiimonas arsenicoxydans
     ORGANISM  Herminiimonas arsenicoxydans
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Oxalobacteraceae; Herminiimonas.
   REFERENCE   1  (bases 1 to 3424307)
     AUTHORS   Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E.,
               Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M.,
               Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M.,
               Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S.,
               Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,N.,
               Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van
               Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and
               Bertin,P.N.
     TITLE     A Tale of Two Oxidation States: Bacterial Colonization of
               Arsenic-Rich Environments
     JOURNAL   Plos Genet. (2007) In press
     REMARK    Annotation data relative to BLAST similarities, COG assignations,
               enzymatic function prediction (PRIAM software), TMHMM and SignalP
               predictions, and synteny results (Syntonizer software) are
               available in ArsenoScope database via the MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage. Each annotation includes a
               confidence level as follow: 1 : Function experimentally
               demonstrated in the studied organism 2a : Function of homologous
               gene experimentally demonstrated in an other organism 2b : Function
               of strongly homologous gene 3 : Function proposed based on presence
               of conserved amino acid motif, structural feature or limited
               homology 4 : Homologs of previously reported genes of unknown
               function 5 : No homology to any previously reported sequences 6 :
               Doubtful CDS 7 : Gene remnant
   REFERENCE   2  (bases 1 to 3424307)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3424307)
     AUTHORS   Genoscope.
     TITLE     Direct Submission
     JOURNAL   Submitted (12-MAR-2007) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
     REMARK    1: UMR7156 CNRS & Universite Louis Pasteur, Strasbourg, France 2:
               Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA &
               Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4:
               UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur,
               Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur,
               Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557
               CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9:
               UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis
               Pasteur, Strasbourg, France
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CU207211.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
30881 30982 + 102 134093294 HEARmisc_RNA_5 - THI
189743 189818 - 76 134093294 HEARtRNA45 - 17 Phe tRNA
202826 204361 + 1536 134093294 HEAR_16s_1 - ribosomal RNA 16s
204476 204552 + 77 134093294 HEARtRNA1 - 14 Ile tRNA
204573 204648 + 76 134093294 HEARtRNA2 - 02 Ala tRNA
204951 207824 + 2874 134093294 HEAR_23s_1 - ribosomal RNA 23s
207986 208103 + 118 134093294 HEAR_5s_1 - ribosomal RNA 5s
208366 208441 + 76 134093294 HEARtRNA3 - 12 Thr tRNA
328955 329062 + 108 134093294 HEARmisc_RNA_6 - THI
401229 401305 - 77 134093294 HEARtRNA44 - 16 Met tRNA
442449 442527 + 79 134093294 HEARtRNA4 - 16 Met tRNA
575061 576596 + 1536 134093294 HEAR_16s_2 - ribosomal RNA 16s
576711 576787 + 77 134093294 HEARtRNA5 - 14 Ile tRNA
576808 576883 + 76 134093294 HEARtRNA6 - 02 Ala tRNA
577186 580059 + 2874 134093294 HEAR_23s_2 - ribosomal RNA 23s
580220 580337 + 118 134093294 HEAR_5s_2 - ribosomal RNA 5s
595078 595154 + 77 134093294 HEARtRNA7 - 03 Pro tRNA
701789 701873 - 85 134093294 HEARtRNA43 - 15 Leu tRNA
922503 922578 - 76 134093294 HEARtRNA42 - 09 His tRNA
927702 927792 + 91 134093294 HEARtRNA8 - 08 Ser tRNA
943445 943547 - 103 134093294 HEARmisc_RNA_7 - THI
987457 987532 + 76 134093294 HEARtRNA9 - 02 Ala tRNA
987571 987646 + 76 134093294 HEARtRNA10 - 04 Glu tRNA
1004873 1004950 + 78 134093294 HEARmisc_RNA_3 - Intron_gpII
1036677 1036766 + 90 134093294 HEARtRNA11 - 08 Ser tRNA
1052801 1052902 + 102 134093294 HEARmisc_RNA_1 - putative SRP_bact
1192516 1192592 + 77 134093294 HEARtRNA12 - 03 Pro tRNA
1193456 1193532 - 77 134093294 HEARtRNA41 - 11 Arg tRNA
1295685 1295769 - 85 134093294 HEARtRNA40 - 15 Leu tRNA
1309047 1309140 + 94 134093294 HEARtRNA13 - 08 Ser tRNA
1758776 1758852 - 77 134093294 HEARtRNA39 - 06 Asp tRNA
1758888 1758963 - 76 134093294 HEARtRNA38 - 13 Val tRNA
1765723 1765809 - 87 134093294 HEARtRNA37 - 15 Leu tRNA
1806755 1806831 - 77 134093294 HEARtRNA36 - 03 Pro tRNA
1814879 1814955 - 77 134093294 HEARtRNA35 - 13 Val tRNA
1840117 1840201 - 85 134093294 HEARtRNA34 - 15 Leu tRNA
1880122 1880198 - 77 134093294 HEARtRNA33 - 11 Arg tRNA
1977415 1977501 - 87 134093294 HEARtRNA32 - 15 Leu tRNA
1977561 1977634 - 74 134093294 HEARtRNA31 - 19 Cys tRNA
2066139 2066214 - 76 134093294 HEARtRNA30 - 01 Gly tRNA
2097571 2097745 - 175 134093294 HEARmisc_RNA_4 - RFN
2123464 2123553 - 90 134093294 HEARtRNA29 - 08 Ser tRNA
2246882 2246957 + 76 134093294 HEARtRNA14 - 07 Asn tRNA
2302582 2302656 - 75 134093294 HEARtRNA28 - 13 Val tRNA
2385687 2385762 + 76 134093294 HEARtRNA15 - 10 Lys tRNA
2413748 2413824 - 77 134093294 HEARtRNA27 - 16 Met tRNA
2428705 2428779 + 75 134093294 HEARtRNA16 - 11 Arg tRNA
2665524 2665597 + 74 134093294 HEARtRNA17 - 01 Gly tRNA
2796781 2797042 - 262 134093294 HEARmisc_RNA_2 - RNaseP_bact_a
2869002 2869078 + 77 134093294 HEARtRNA18 - 05 Gln tRNA
3006051 3006126 - 76 134093294 HEARtRNA26 - 12 Thr tRNA
3136635 3136710 - 76 134093294 HEARtRNA25 - 20 Trp tRNA
3138084 3138158 - 75 134093294 HEARtRNA24 - 12 Thr tRNA
3138205 3138278 - 74 134093294 HEARtRNA23 - 01 Gly tRNA
3138324 3138409 - 86 134093294 HEARtRNA22 - 18 Tyr tRNA
3311308 3311383 - 76 134093294 HEARtRNA21 - 11 Arg tRNA
3320840 3320915 + 76 134093294 HEARtRNA19 - 13 Val tRNA
3320955 3321031 + 77 134093294 HEARtRNA20 - 06 Asp tRNA