Геном прокариот/Материалы:NC 009256

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009256            3652814 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Burkholderia vietnamiensis G4 chromosome 1, complete sequence.
   ACCESSION   NC_009256
   VERSION     NC_009256.1  GI:134294128
   KEYWORDS    .
   SOURCE      Burkholderia vietnamiensis G4
     ORGANISM  Burkholderia vietnamiensis G4
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3652814)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Burkholderia vietnamiensis G4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3652814)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3652814)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000614.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436384
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
26895	27006	-	112	134294128	Bcep1808_R0001	-	5S ribosomal RNA
27164	30045	-	2882	134294128	Bcep1808_R0002	-	23S ribosomal RNA
30429	31954	-	1526	134294128	Bcep1808_R0003	-	16S ribosomal RNA
37863	37939	+	77	134294128	Bcep1808_R0004	-	^{13 Val tRNA}
180785	180860	+	76	134294128	Bcep1808_R0005	-	^{11 Arg tRNA}
278838	278913	+	76	134294128	Bcep1808_R0006	-	^{02 Ala tRNA}
346867	348392	+	1526	134294128	Bcep1808_R0007	-	16S ribosomal RNA
348457	348533	+	77	134294128	Bcep1808_R0008	-	^{14 Ile tRNA}
348572	348647	+	76	134294128	Bcep1808_R0009	-	^{02 Ala tRNA}
348932	351813	+	2882	134294128	Bcep1808_R0010	-	23S ribosomal RNA
351970	352081	+	112	134294128	Bcep1808_R0011	-	5S ribosomal RNA
354801	354886	+	86	134294128	Bcep1808_R0012	-	^{18 Tyr tRNA}
354930	355003	+	74	134294128	Bcep1808_R0013	-	^{01 Gly tRNA}
355028	355102	+	75	134294128	Bcep1808_R0014	-	^{12 Thr tRNA}
356418	356493	+	76	134294128	Bcep1808_R0015	-	^{20 Trp tRNA}
456561	456636	+	76	134294128	Bcep1808_R0016	-	^{12 Thr tRNA}
565941	567466	+	1526	134294128	Bcep1808_R0017	-	16S ribosomal RNA
567530	567606	+	77	134294128	Bcep1808_R0018	-	^{14 Ile tRNA}
567696	567771	+	76	134294128	Bcep1808_R0019	-	^{02 Ala tRNA}
568057	570938	+	2882	134294128	Bcep1808_R0020	-	23S ribosomal RNA
571096	571207	+	112	134294128	Bcep1808_R0021	-	5S ribosomal RNA
612849	612925	-	77	134294128	Bcep1808_R0022	-	^{03 Pro tRNA}
708084	708430	+	347	134294128	Bcep1808_R0023	-	RNase P
808411	808486	-	76	134294128	Bcep1808_R0024	-	^{10 Lys tRNA}
932185	932259	-	75	134294128	Bcep1808_R0025	-	^{01 Gly tRNA}
977698	977788	+	91	134294128	Bcep1808_R0026	-	^{08 Ser tRNA}
992248	992335	-	88	134294128	Bcep1808_R0027	-	^{08 Ser tRNA}
999676	999752	-	77	134294128	Bcep1808_R0028	-	^{11 Arg tRNA}
999814	999890	-	77	134294128	Bcep1808_R0029	-	^{11 Arg tRNA}
999956	1000032	-	77	134294128	Bcep1808_R0030	-	^{11 Arg tRNA}
1012354	1012429	-	76	134294128	Bcep1808_R0031	-	^{12 Thr tRNA}
1042237	1042603	-	367	134294128	Bcep1808_R0032	-	tmRNA
1103548	1103623	-	76	134294128	Bcep1808_R0033	-	^{07 Asn tRNA}
1103698	1103773	-	76	134294128	Bcep1808_R0034	-	^{07 Asn tRNA}
1149882	1149957	+	76	134294128	Bcep1808_R0035	-	^{01 Gly tRNA}
1150009	1150084	+	76	134294128	Bcep1808_R0036	-	^{01 Gly tRNA}
1150136	1150211	+	76	134294128	Bcep1808_R0037	-	^{01 Gly tRNA}
1150312	1150385	+	74	134294128	Bcep1808_R0038	-	^{19 Cys tRNA}
1375382	1375458	-	77	134294128	Bcep1808_R0039	-	^{03 Pro tRNA}
1384681	1384757	+	77	134294128	Bcep1808_R0040	-	^{11 Arg tRNA}
1546428	1546504	+	77	134294128	Bcep1808_R0041	-	^{13 Val tRNA}
1558082	1558158	+	77	134294128	Bcep1808_R0042	-	^{03 Pro tRNA}
1628581	1628667	-	87	134294128	Bcep1808_R0043	-	^{15 Leu tRNA}
1628927	1629013	-	87	134294128	Bcep1808_R0044	-	^{15 Leu tRNA}
1629240	1629326	-	87	134294128	Bcep1808_R0045	-	^{15 Leu tRNA}
1642058	1642134	-	77	134294128	Bcep1808_R0046	-	^{16 Met tRNA}
1650361	1650436	+	76	134294128	Bcep1808_R0047	-	^{09 His tRNA}
1910539	1910641	-	103	134294128	Bcep1808_R0048	-	SRP RNA; RNA component of signal recognition particle
2018385	2018461	-	77	134294128	Bcep1808_R0049	-	^{06 Asp tRNA}
2018485	2018560	-	76	134294128	Bcep1808_R0050	-	^{13 Val tRNA}
2028973	2029059	-	87	134294128	Bcep1808_R0051	-	^{15 Leu tRNA}
2141554	2141630	-	77	134294128	Bcep1808_R0052	-	^{06 Asp tRNA}
2141704	2141779	-	76	134294128	Bcep1808_R0053	-	^{04 Glu tRNA}
2141845	2141921	-	77	134294128	Bcep1808_R0054	-	^{06 Asp tRNA}
2142001	2142076	-	76	134294128	Bcep1808_R0055	-	^{04 Glu tRNA}
2142140	2142216	-	77	134294128	Bcep1808_R0056	-	^{06 Asp tRNA}
2142298	2142373	-	76	134294128	Bcep1808_R0057	-	^{04 Glu tRNA}
2142511	2142586	-	76	134294128	Bcep1808_R0058	-	^{02 Ala tRNA}
2160575	2160668	-	94	134294128	Bcep1808_R0059	-	^{08 Ser tRNA}
2468153	2468229	-	77	134294128	Bcep1808_R0060	-	^{16 Met tRNA}
2486762	2486836	+	75	134294128	Bcep1808_R0061	-	^{13 Val tRNA}
2487327	2487403	-	77	134294128	Bcep1808_R0062	-	^{16 Met tRNA}
2517095	2517185	+	91	134294128	Bcep1808_R0063	-	^{08 Ser tRNA}
2556574	2556685	-	112	134294128	Bcep1808_R0064	-	5S ribosomal RNA
2556843	2559724	-	2882	134294128	Bcep1808_R0065	-	23S ribosomal RNA
2560001	2560076	-	76	134294128	Bcep1808_R0066	-	^{02 Ala tRNA}
2560115	2560191	-	77	134294128	Bcep1808_R0067	-	^{14 Ile tRNA}
2560255	2561780	-	1526	134294128	Bcep1808_R0068	-	16S ribosomal RNA
2592529	2592613	-	85	134294128	Bcep1808_R0069	-	^{15 Leu tRNA}
2721372	2721446	+	75	134294128	Bcep1808_R0070	-	^{11 Arg tRNA}
2737268	2737344	+	77	134294128	Bcep1808_R0071	-	^{16 Met tRNA}
2835978	2836062	+	85	134294128	Bcep1808_R0072	-	^{15 Leu tRNA}
3062423	3062499	+	77	134294128	Bcep1808_R0073	-	^{16 Met tRNA}
3220371	3220447	+	77	134294128	Bcep1808_R0074	-	^{05 Gln tRNA}
3616383	3616458	-	76	134294128	Bcep1808_R0075	-	^{17 Phe tRNA}
3633883	3633958	+	76	134294128	Bcep1808_R0076	-	^{10 Lys tRNA}