Геном прокариот/Материалы:NC 009338

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009338            5619607 bp    DNA     circular BCT 17-APR-2007
   DEFINITION  Mycobacterium gilvum PYR-GCK, complete genome.
   ACCESSION   NC_009338
   VERSION     NC_009338.1  GI:145220606
   KEYWORDS    .
   SOURCE      Mycobacterium gilvum PYR-GCK
     ORGANISM  Mycobacterium gilvum PYR-GCK
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 5619607)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Mycobacterium gilvum PYR-GCK
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5619607)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5619607)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (09-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000656.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000377
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
288923	288996	+	74	145220606	Mflv_R0001	-	^{01 Gly tRNA}
831384	831466	-	83	145220606	Mflv_R0002	-	^{15 Leu tRNA}
846632	846707	-	76	145220606	Mflv_R0003	-	^{02 Ala tRNA}
846843	846916	-	74	145220606	Mflv_R0004	-	^{14 Ile tRNA}
1248988	1249077	+	90	145220606	Mflv_R0005	-	^{08 Ser tRNA}
1252964	1253052	+	89	145220606	Mflv_R0006	-	^{08 Ser tRNA}
1253100	1253172	+	73	145220606	Mflv_R0007	-	^{11 Arg tRNA}
1271357	1271447	+	91	145220606	Mflv_R0008	-	^{08 Ser tRNA}
1332484	1332569	-	86	145220606	Mflv_R0009	-	^{08 Ser tRNA}
1332666	1332758	+	93	145220606	Mflv_R0010	-	SRP RNA; RNA component of signal recognition particle
1417917	1417990	-	74	145220606	Mflv_R0011	-	^{03 Pro tRNA}
1455669	1455744	+	76	145220606	Mflv_R0012	-	^{12 Thr tRNA}
1652551	1652625	-	75	145220606	Mflv_R0013	-	^{12 Thr tRNA}
1739588	1739663	-	76	145220606	Mflv_R0014	-	^{10 Lys tRNA}
1739791	1739863	+	73	145220606	Mflv_R0015	-	^{04 Glu tRNA}
1739903	1739979	+	77	145220606	Mflv_R0016	-	^{06 Asp tRNA}
1740021	1740094	+	74	145220606	Mflv_R0017	-	^{17 Phe tRNA}
1884092	1884164	-	73	145220606	Mflv_R0018	-	^{11 Arg tRNA}
1980034	1980109	+	76	145220606	Mflv_R0019	-	^{02 Ala tRNA}
2022565	2022636	-	72	145220606	Mflv_R0020	-	^{05 Gln tRNA}
2054754	2054830	+	77	145220606	Mflv_R0021	-	^{15 Leu tRNA}
2386934	2387006	-	73	145220606	Mflv_R0022	-	^{11 Arg tRNA}
2414610	2416122	+	1513	145220606	Mflv_R0023	-	16S ribosomal RNA
2416551	2419710	+	3160	145220606	Mflv_R0024	-	23S ribosomal RNA
2419793	2419904	+	112	145220606	Mflv_R0025	-	5S ribosomal RNA
2463953	2464037	+	85	145220606	Mflv_R0026	-	^{15 Leu tRNA}
2652379	2652454	-	76	145220606	Mflv_R0027	-	^{10 Lys tRNA}
2653892	2653967	-	76	145220606	Mflv_R0028	-	^{09 His tRNA}
2674083	2674155	-	73	145220606	Mflv_R0029	-	^{11 Arg tRNA}
2704089	2704162	-	74	145220606	Mflv_R0030	-	^{01 Gly tRNA}
2704297	2704373	+	77	145220606	Mflv_R0031	-	^{03 Pro tRNA}
2866420	2866495	+	76	145220606	Mflv_R0032	-	^{07 Asn tRNA}
2878324	2878397	+	74	145220606	Mflv_R0033	-	^{16 Met tRNA}
2932311	2932385	+	75	145220606	Mflv_R0034	-	^{13 Val tRNA}
3066122	3066475	+	354	145220606	Mflv_R0035	-	RNase P RNA
3217675	3217760	-	86	145220606	Mflv_R0036	-	^{15 Leu tRNA}
3717086	3717159	-	74	145220606	Mflv_R0037	-	^{03 Pro tRNA}
3739301	3739412	-	112	145220606	Mflv_R0038	-	5S ribosomal RNA
3739495	3742653	-	3159	145220606	Mflv_R0039	-	23S ribosomal RNA
3743082	3744594	-	1513	145220606	Mflv_R0040	-	16S ribosomal RNA
3790949	3791019	-	71	145220606	Mflv_R0041	-	Xaa tRNA
3813229	3813305	+	77	145220606	Mflv_R0042	-	^{15 Leu tRNA}
4154724	4154795	-	72	145220606	Mflv_R0043	-	^{13 Val tRNA}
4155427	4155502	+	76	145220606	Mflv_R0044	-	^{01 Gly tRNA}
4155527	4155600	+	74	145220606	Mflv_R0045	-	^{19 Cys tRNA}
4155613	4155687	+	75	145220606	Mflv_R0046	-	^{13 Val tRNA}
4487808	4487883	-	76	145220606	Mflv_R0047	-	^{04 Glu tRNA}
4487946	4488020	-	75	145220606	Mflv_R0048	-	^{05 Gln tRNA}
4684643	4684718	-	76	145220606	Mflv_R0049	-	^{02 Ala tRNA}
4729388	4729753	+	366	145220606	Mflv_R0050	-	tmRNA
4948427	4948503	-	77	145220606	Mflv_R0051	-	^{16 Met tRNA}
5441926	5441998	-	73	145220606	Mflv_R0052	-	^{20 Trp tRNA}
5443890	5443963	-	74	145220606	Mflv_R0053	-	^{16 Met tRNA}
5444013	5444085	-	73	145220606	Mflv_R0054	-	^{12 Thr tRNA}
5596430	5596515	-	86	145220606	Mflv_R0055	-	^{18 Tyr tRNA}