Геном прокариот/Материалы:NC 009342

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009342            3314179 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Corynebacterium glutamicum R, complete genome.
   ACCESSION   NC_009342
   VERSION     NC_009342.1  GI:145294042
   KEYWORDS    .
   SOURCE      Corynebacterium glutamicum R
     ORGANISM  Corynebacterium glutamicum R
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Corynebacteriaceae; Corynebacterium.
   REFERENCE   1
     AUTHORS   Yukawa,H., Omumasaba,C.A., Nonaka,H., Kos,P., Okai,N., Suzuki,N.,
               Suda,M., Tsuge,Y., Watanabe,J., Ikeda,Y., Vertes,A.A. and Inui,M.
     TITLE     Comparative analysis of the Corynebacterium glutamicum group and
               complete genome sequence of strain R
     JOURNAL   Microbiology (Reading, Engl.) 153 (PT 4), 1042-1058 (2007)
      PUBMED   17379713
   REFERENCE   2
     AUTHORS   Inui,M., Suda,M., Okino,S., Nonaka,H., Puskas,L.G., Vertes,A.A. and
               Yukawa,H.
     TITLE     Transcriptional profiling of Corynebacterium glutamicum metabolism
               during organic acid productions under oxygen deprivation conditions
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 3314179)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 3314179)
     AUTHORS   Nonaka,H., Kos,P.B., Okai,N., Inui,M. and Yukawa,H.
     TITLE     Direct Submission
     JOURNAL   Submitted (10-AUG-2005) Masayuki Inui, Research Institute of
               Innovative Technology for the Earth (RITE), Microbiology research
               group; 9-2 Kizugawadai Kizu-cho, Soraku-gun, Kyoto 619-0292, Japan
               (E-mail:mmg-lab@rite.or.jp, Tel:81-774-75-2308, Fax:81-774-75-2321)
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AP009044.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
20471	20547	+	77	145294042	cgR_t01	-	^{14 Ile tRNA}
20559	20631	+	73	145294042	cgR_t02	-	^{02 Ala tRNA}
29083	29155	+	73	145294042	cgR_t03	-	^{02 Ala tRNA}
44267	44343	+	77	145294042	cgR_t04	-	^{14 Ile tRNA}
44355	44427	+	73	145294042	cgR_t05	-	^{02 Ala tRNA}
69124	69210	+	87	145294042	cgR_t06	-	^{15 Leu tRNA}
105305	106842	+	1538	145294042	cgR_r01	-	16S ribosomal RNA
107241	108736	+	1496	145294042	cgR_r02	-	23S ribosomal RNA
108846	110299	+	1454	145294042	cgR_r02	-	23S ribosomal RNA
110424	110544	+	121	145294042	cgR_r03	-	5S ribosomal RNA
311261	311348	+	88	145294042	cgR_t07	-	^{08 Ser tRNA}
322932	323020	+	89	145294042	cgR_t08	-	^{08 Ser tRNA}
323050	323122	+	73	145294042	cgR_t09	-	^{11 Arg tRNA}
327117	327192	+	76	145294042	cgR_t10	-	^{11 Arg tRNA}
329795	329885	+	91	145294042	cgR_t11	-	^{08 Ser tRNA}
340178	340265	-	88	145294042	cgR_t12	-	^{08 Ser tRNA}
397608	397684	-	77	145294042	cgR_t13	-	^{03 Pro tRNA}
434770	434845	+	76	145294042	cgR_t14	-	^{12 Thr tRNA}
635660	635745	+	86	145294042	cgR_t15	-	^{18 Tyr tRNA}
636351	636423	+	73	145294042	cgR_t16	-	^{12 Thr tRNA}
636676	636748	+	73	145294042	cgR_t17	-	^{12 Thr tRNA}
636787	636861	+	75	145294042	cgR_t18	-	^{16 Met tRNA}
636955	637030	+	76	145294042	cgR_t19	-	^{20 Trp tRNA}
992918	992994	+	77	145294042	cgR_t20	-	^{16 Met tRNA}
1012945	1013021	+	77	145294042	cgR_t21	-	^{16 Met tRNA}
1020717	1022254	+	1538	145294042	cgR_r04	-	16S ribosomal RNA
1022654	1024148	+	1495	145294042	cgR_r05	-	23S ribosomal RNA
1024258	1025711	+	1454	145294042	cgR_r05	-	23S ribosomal RNA
1025835	1025955	+	121	145294042	cgR_r06	-	5S ribosomal RNA
1061777	1061852	-	76	145294042	cgR_t22	-	^{11 Arg tRNA}
1168215	1168286	-	72	145294042	cgR_t23	-
1188487	1188563	+	77	145294042	cgR_t24	-	^{15 Leu tRNA}
1379041	1379113	-	73	145294042	cgR_t25	-	^{11 Arg tRNA}
1509288	1509359	+	72	145294042	cgR_t26	-	^{05 Gln tRNA}
1509398	1509470	+	73	145294042	cgR_t27	-	^{04 Glu tRNA}
1509537	1509608	+	72	145294042	cgR_t28	-	^{05 Gln tRNA}
1509647	1509719	+	73	145294042	cgR_t29	-	^{04 Glu tRNA}
1511270	1511345	+	76	145294042	cgR_t30	-	^{04 Glu tRNA}
1557374	1557450	-	77	145294042	cgR_t31	-	^{15 Leu tRNA}
1623746	1625283	+	1538	145294042	cgR_r07	-	16S ribosomal RNA
1625682	1627177	+	1496	145294042	cgR_r08	-	23S ribosomal RNA
1627210	1628740	+	1531	145294042	cgR_r08	-	23S ribosomal RNA
1628866	1628987	+	122	145294042	cgR_r09	-	5S ribosomal RNA
1659569	1659645	-	77	145294042	cgR_t32	-	^{03 Pro tRNA}
1751812	1751897	+	86	145294042	cgR_t33	-	^{15 Leu tRNA}
1751984	1752069	+	86	145294042	cgR_t34	-	^{15 Leu tRNA}
1914070	1914145	-	76	145294042	cgR_t35	-	^{01 Gly tRNA}
1914179	1914253	-	75	145294042	cgR_t36	-	^{13 Val tRNA}
1914287	1914359	-	73	145294042	cgR_t37	-	^{01 Gly tRNA}
1914707	1914781	+	75	145294042	cgR_t38	-	^{13 Val tRNA}
2108803	2108880	-	78	145294042	cgR_t39	-	^{15 Leu tRNA}
2339688	2339763	-	76	145294042	cgR_t40	-	^{13 Val tRNA}
2357091	2357167	-	77	145294042	cgR_t41	-	^{16 Met tRNA}
2358949	2359024	+	76	145294042	cgR_t42	-	^{07 Asn tRNA}
2359160	2359235	+	76	145294042	cgR_t43	-	^{07 Asn tRNA}
2544699	2544772	-	74	145294042	cgR_t44	-	^{03 Pro tRNA}
2547077	2547151	-	75	145294042	cgR_t45	-	^{01 Gly tRNA}
2596081	2596157	+	77	145294042	cgR_t46	-	^{11 Arg tRNA}
2598018	2598093	+	76	145294042	cgR_t47	-	^{09 His tRNA}
2623362	2623437	+	76	145294042	cgR_t48	-	^{10 Lys tRNA}
2623525	2623597	+	73	145294042	cgR_t49	-	^{10 Lys tRNA}
2654519	2654603	-	85	145294042	cgR_t50	-	^{15 Leu tRNA}
2687026	2687101	-	76	145294042	cgR_t51	-	^{02 Ala tRNA}
2698051	2698171	-	121	145294042	cgR_r10	-	5S ribosomal RNA
2698297	2699750	-	1454	145294042	cgR_r11	-	23S ribosomal RNA
2699860	2701355	-	1496	145294042	cgR_r11	-	23S ribosomal RNA
2701757	2703291	-	1535	145294042	cgR_r12	-	16S ribosomal RNA
2711621	2711741	-	121	145294042	cgR_r13	-	5S ribosomal RNA
2711867	2713320	-	1454	145294042	cgR_r14	-	23S ribosomal RNA
2713430	2714925	-	1496	145294042	cgR_r14	-	23S ribosomal RNA
2715327	2716861	-	1535	145294042	cgR_r15	-	16S ribosomal RNA
2723166	2723241	-	76	145294042	cgR_t52	-	^{17 Phe tRNA}
2723274	2723347	-	74	145294042	cgR_t53	-	^{06 Asp tRNA}
2726071	2726144	-	74	145294042	cgR_t54	-	^{06 Asp tRNA}
2726183	2726258	-	76	145294042	cgR_t55	-	^{04 Glu tRNA}
2728128	2728200	-	73	145294042	cgR_t56	-	^{10 Lys tRNA}
2794915	2794990	-	76	145294042	cgR_t57	-	^{12 Thr tRNA}
3031337	3031410	+	74	145294042	cgR_t58	-	^{01 Gly tRNA}
3171880	3172000	-	121	145294042	cgR_r16	-	5S ribosomal RNA
3172125	3173578	-	1454	145294042	cgR_r17	-	23S ribosomal RNA
3173688	3175183	-	1496	145294042	cgR_r17	-	23S ribosomal RNA
3175585	3177119	-	1535	145294042	cgR_r18	-	16S ribosomal RNA