Геном прокариот/Материалы:NC 009437

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009437            2970275 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Caldicellulosiruptor saccharolyticus DSM 8903, complete genome.
   ACCESSION   NC_009437
   VERSION     NC_009437.1  GI:146295085
   KEYWORDS    .
   SOURCE      Caldicellulosiruptor saccharolyticus DSM 8903
     ORGANISM  Caldicellulosiruptor saccharolyticus DSM 8903
               Bacteria; Firmicutes; Clostridia; Clostridiales;
               Syntrophomonadaceae; Caldicellulosiruptor.
   REFERENCE   1  (bases 1 to 2970275)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., van de Werken,H.J.G.,
               Verhaart,M.R.A., VanFossen,A.L., Lewis,D.L., Nichols,J.D.,
               Goorissen,H.P., van Niel,E.W.J., Stams,F.J.M., Willquist,K.U.,
               Ward,D.E., van der Oost,J., Kelly,R.M., Kengen,S.M.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Genome sequence of the thermophilic hydrogen-producing bacterium
               Caldicellulosiruptor saccharolyticus DSM 8903
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2970275)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2970275)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000679.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000186
               Source DNA available from Robert M Kelly (rmkelly@eos.ncsu.edu)
               Bacteria available from DSMZ: DSM 8903
               Contacts: Robert M Kelly (rmkelly@eos.ncsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additinal note: There are an unresolved number of A's at location
               913,462.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
284251	285806	+	1556	146295085	Csac_R0001	-	16S ribosomal RNA
285859	285934	+	76	146295085	Csac_R0002	-	^{02 Ala tRNA}
285944	286020	+	77	146295085	Csac_R0003	-	^{14 Ile tRNA}
286093	289056	+	2964	146295085	Csac_R0004	-	23S ribosomal RNA
289124	289239	+	116	146295085	Csac_R0005	-	5S ribosomal RNA
330732	330824	-	93	146295085	Csac_R0006	-	^{08 Ser tRNA}
486454	488011	+	1558	146295085	Csac_R0007	-	16S ribosomal RNA
488147	491112	+	2966	146295085	Csac_R0008	-	23S ribosomal RNA
491189	491304	+	116	146295085	Csac_R0009	-	5S ribosomal RNA
517256	517343	+	88	146295085	Csac_R0010	-	^{15 Leu tRNA}
605388	605464	+	77	146295085	Csac_R0011	-	^{03 Pro tRNA}
605560	605644	+	85	146295085	Csac_R0012	-	^{18 Tyr tRNA}
605662	605737	+	76	146295085	Csac_R0013	-	^{12 Thr tRNA}
605764	605839	+	76	146295085	Csac_R0014	-	^{10 Lys tRNA}
605848	605924	+	77	146295085	Csac_R0015	-	^{11 Arg tRNA}
850051	850137	+	87	146295085	Csac_R0016	-	SRP RNA; RNA component of signal recognition particle
861334	861425	+	92	146295085	Csac_R0017	-	^{08 Ser tRNA}
1013590	1013667	-	78	146295085	Csac_R0018	-	^{03 Pro tRNA}
1020428	1020503	+	76	146295085	Csac_R0019	-	^{13 Val tRNA}
1020512	1020588	+	77	146295085	Csac_R0020	-	^{06 Asp tRNA}
1020600	1020675	+	76	146295085	Csac_R0021	-	^{17 Phe tRNA}
1020694	1020769	+	76	146295085	Csac_R0022	-	^{01 Gly tRNA}
1020792	1020866	+	75	146295085	Csac_R0023	-	^{19 Cys tRNA}
1143722	1143797	-	76	146295085	Csac_R0024	-	^{11 Arg tRNA}
1244819	1245183	-	365	146295085	Csac_R0025	-	tmRNA
1389177	1389269	-	93	146295085	Csac_R0026	-	^{08 Ser tRNA}
1400474	1400550	+	77	146295085	Csac_R0027	-	^{09 His tRNA}
1400565	1400640	+	76	146295085	Csac_R0028	-	^{05 Gln tRNA}
1405841	1405916	+	76	146295085	Csac_R0029	-	^{10 Lys tRNA}
1617865	1617941	-	77	146295085	Csac_R0030	-	^{11 Arg tRNA}
1813559	1813632	+	74	146295085	Csac_R0031	-	^{01 Gly tRNA}
1891247	1891325	-	79	146295085	Csac_R0032	-	^{03 Pro tRNA}
1912700	1912776	-	77	146295085	Csac_R0033	-	^{13 Val tRNA}
2241920	2241994	+	75	146295085	Csac_R0034	-	^{12 Thr tRNA}
2263873	2264171	-	299	146295085	Csac_R0035	-	bacterial RNase P
2318657	2318743	-	87	146295085	Csac_R0036	-	^{15 Leu tRNA}
2323865	2323939	-	75	146295085	Csac_R0037	-	^{04 Glu tRNA}
2323969	2324045	-	77	146295085	Csac_R0038	-	^{16 Met tRNA}
2324066	2324141	-	76	146295085	Csac_R0039	-	^{16 Met tRNA}
2324147	2324236	-	90	146295085	Csac_R0040	-	^{15 Leu tRNA}
2324293	2324377	-	85	146295085	Csac_R0041	-	^{15 Leu tRNA}
2350660	2350736	-	77	146295085	Csac_R0042	-	^{12 Thr tRNA}
2350786	2350859	-	74	146295085	Csac_R0043	-	^{01 Gly tRNA}
2353809	2353899	-	91	146295085	Csac_R0044	-	^{08 Ser tRNA}
2375147	2375262	-	116	146295085	Csac_R0045	-	5S ribosomal RNA
2375335	2378297	-	2963	146295085	Csac_R0046	-	23S ribosomal RNA
2378371	2378447	-	77	146295085	Csac_R0047	-	^{14 Ile tRNA}
2378454	2378529	-	76	146295085	Csac_R0048	-	^{02 Ala tRNA}
2378593	2380149	-	1557	146295085	Csac_R0049	-	16S ribosomal RNA
2390093	2390168	-	76	146295085	Csac_R0050	-	^{04 Glu tRNA}
2390173	2390246	-	74	146295085	Csac_R0051	-	^{05 Gln tRNA}
2742575	2742649	-	75	146295085	Csac_R0052	-	^{04 Glu tRNA}
2742673	2742748	-	76	146295085	Csac_R0053	-	^{10 Lys tRNA}
2876559	2876634	-	76	146295085	Csac_R0054	-	^{16 Met tRNA}
2876644	2876718	-	75	146295085	Csac_R0055	-	^{07 Asn tRNA}
2884397	2884484	+	88	146295085	Csac_R0056	-	^{15 Leu tRNA}
2884554	2884630	+	77	146295085	Csac_R0057	-	^{11 Arg tRNA}
2938708	2938783	+	76	146295085	Csac_R0058	-	^{20 Trp tRNA}