Геном прокариот/Материалы:NC 009483
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Базовый уровень статей |
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LOCUS NC_009483 5136364 bp DNA circular BCT 14-AUG-2007
DEFINITION Geobacter uraniumreducens Rf4, complete genome.
ACCESSION NC_009483
VERSION NC_009483.1 GI:148262085
KEYWORDS .
SOURCE Geobacter uraniumreducens Rf4
ORGANISM Geobacter uraniumreducens Rf4
Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
Geobacteraceae; Geobacter.
REFERENCE 1 (bases 1 to 5136364)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,
Aklujkar,M., Lovley,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Geobacter uraniumreducens Rf4
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5136364)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5136364)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,
Aklujkar,M., Lovley,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000698.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000183
Source DNA and bacteria available from Evgenya Shelobolina
(zhenya@wisc.edu)
Contacts: Evgenya Shelobolina (zhenya@wisc.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 65614 | 65701 | + | 88 | 148262085 | Gura_R0001 | - | 08 Ser tRNA |
| 179974 | 180049 | - | 76 | 148262085 | Gura_R0002 | - | 02 Ala tRNA |
| 348560 | 348645 | + | 86 | 148262085 | Gura_R0003 | - | 08 Ser tRNA |
| 348722 | 348814 | + | 93 | 148262085 | Gura_R0004 | - | 08 Ser tRNA |
| 349356 | 349432 | + | 77 | 148262085 | Gura_R0005 | - | 11 Arg tRNA |
| 349504 | 349580 | + | 77 | 148262085 | Gura_R0006 | - | 11 Arg tRNA |
| 402849 | 402924 | - | 76 | 148262085 | Gura_R0007 | - | 17 Phe tRNA |
| 792083 | 792158 | + | 76 | 148262085 | Gura_R0008 | - | 10 Lys tRNA |
| 792160 | 792237 | + | 78 | 148262085 | Gura_R0009 | - | 04 Glu tRNA |
| 1255031 | 1255106 | + | 76 | 148262085 | Gura_R0010 | - | 12 Thr tRNA |
| 1255134 | 1255218 | + | 85 | 148262085 | Gura_R0011 | - | 18 Tyr tRNA |
| 1255330 | 1255406 | + | 77 | 148262085 | Gura_R0012 | - | 01 Gly tRNA |
| 1255420 | 1255495 | + | 76 | 148262085 | Gura_R0013 | - | 12 Thr tRNA |
| 1256994 | 1257070 | + | 77 | 148262085 | Gura_R0014 | - | 20 Trp tRNA |
| 1302601 | 1304163 | + | 1563 | 148262085 | Gura_R0015 | - | 16S ribosomal RNA |
| 1304346 | 1304422 | + | 77 | 148262085 | Gura_R0016 | - | 14 Ile tRNA |
| 1304506 | 1304581 | + | 76 | 148262085 | Gura_R0017 | - | 02 Ala tRNA |
| 1304764 | 1307747 | + | 2984 | 148262085 | Gura_R0018 | - | 23S ribosomal RNA |
| 1307909 | 1308040 | + | 132 | 148262085 | Gura_R0019 | - | 5S ribosomal RNA |
| 1701179 | 1701265 | + | 87 | 148262085 | Gura_R0020 | - | 15 Leu tRNA |
| 2223058 | 2223134 | + | 77 | 148262085 | Gura_R0021 | - | 06 Asp tRNA |
| 2223142 | 2223217 | + | 76 | 148262085 | Gura_R0022 | - | 13 Val tRNA |
| 2223289 | 2223365 | + | 77 | 148262085 | Gura_R0023 | - | 06 Asp tRNA |
| 2363728 | 2363802 | - | 75 | 148262085 | Gura_R0024 | - | 13 Val tRNA |
| 2407900 | 2407986 | - | 87 | 148262085 | Gura_R0025 | - | 15 Leu tRNA |
| 2409019 | 2409105 | - | 87 | 148262085 | Gura_R0026 | - | 15 Leu tRNA |
| 2440775 | 2441125 | + | 351 | 148262085 | Gura_R0027 | - | tmRNA |
| 2511536 | 2511611 | - | 76 | 148262085 | Gura_R0028 | - | 02 Ala tRNA |
| 2511744 | 2511830 | + | 87 | 148262085 | Gura_R0029 | - | 15 Leu tRNA |
| 2581140 | 2581214 | - | 75 | 148262085 | Gura_R0030 | - | 01 Gly tRNA |
| 2597086 | 2597160 | - | 75 | 148262085 | Gura_R0031 | - | 04 Glu tRNA |
| 2597262 | 2597335 | - | 74 | 148262085 | Gura_R0032 | - | 05 Gln tRNA |
| 2618934 | 2619018 | - | 85 | 148262085 | Gura_R0033 | - | 15 Leu tRNA |
| 2619073 | 2619148 | - | 76 | 148262085 | Gura_R0034 | - | 09 His tRNA |
| 2619162 | 2619238 | - | 77 | 148262085 | Gura_R0035 | - | 11 Arg tRNA |
| 2619246 | 2619323 | - | 78 | 148262085 | Gura_R0036 | - | 03 Pro tRNA |
| 2871871 | 2871945 | - | 75 | 148262085 | Gura_R0037 | - | 19 Cys tRNA |
| 2956539 | 2956615 | - | 77 | 148262085 | Gura_R0038 | - | 11 Arg tRNA |
| 3046756 | 3046832 | - | 77 | 148262085 | Gura_R0039 | - | 03 Pro tRNA |
| 3104664 | 3104738 | - | 75 | 148262085 | Gura_R0040 | - | 13 Val tRNA |
| 3183675 | 3183751 | - | 77 | 148262085 | Gura_R0041 | - | 16 Met tRNA |
| 3256431 | 3256507 | - | 77 | 148262085 | Gura_R0042 | - | 16 Met tRNA |
| 3687251 | 3687325 | - | 75 | 148262085 | Gura_R0043 | - | 01 Gly tRNA |
| 3813193 | 3813324 | - | 132 | 148262085 | Gura_R0044 | - | 5S ribosomal RNA |
| 3813486 | 3816469 | - | 2984 | 148262085 | Gura_R0045 | - | 23S ribosomal RNA |
| 3816651 | 3816726 | - | 76 | 148262085 | Gura_R0046 | - | 02 Ala tRNA |
| 3816810 | 3816886 | - | 77 | 148262085 | Gura_R0047 | - | 14 Ile tRNA |
| 3817070 | 3818632 | - | 1563 | 148262085 | Gura_R0048 | - | 16S ribosomal RNA |
| 3999819 | 3999895 | + | 77 | 148262085 | Gura_R0049 | - | 11 Arg tRNA |
| 4043694 | 4043787 | + | 94 | 148262085 | Gura_R0050 | - | Sec tRNA |
| 4309698 | 4309772 | - | 75 | 148262085 | Gura_R0051 | - | 05 Gln tRNA |
| 4502814 | 4502889 | + | 76 | 148262085 | Gura_R0052 | - | 12 Thr tRNA |
| 4631037 | 4631362 | - | 326 | 148262085 | Gura_R0053 | - | RNase P |
| 4633430 | 4633506 | - | 77 | 148262085 | Gura_R0054 | - | 16 Met tRNA |
| 4943597 | 4943673 | - | 77 | 148262085 | Gura_R0055 | - | 03 Pro tRNA |
| 5002703 | 5002793 | + | 91 | 148262085 | Gura_R0056 | - | 08 Ser tRNA |
| 5002839 | 5002962 | + | 124 | 148262085 | Gura_R0057 | - | SRP RNA; RNA component of signal recognition particle |
| 5031564 | 5031639 | + | 76 | 148262085 | Gura_R0058 | - | 07 Asn tRNA |