Материалы:NC 002516

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002516            6264404 bp    DNA     circular BCT 20-DEC-2006
   DEFINITION  Pseudomonas aeruginosa PAO1, complete genome.
   ACCESSION   NC_002516
   VERSION     NC_002516.2  GI:110645304
   KEYWORDS    .
   SOURCE      Pseudomonas aeruginosa PAO1
     ORGANISM  Pseudomonas aeruginosa PAO1
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 6264404)
     AUTHORS   Winsor,G.L., Lo,R., Sui,S.J., Ung,K.S., Huang,S., Cheng,D.,
               Ching,W.K., Hancock,R.E. and Brinkman,F.S.
     TITLE     Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating
               community-based, continually updated, genome annotation
     JOURNAL   Nucleic Acids Res. 33 (DATABASE ISSUE), D338-D343 (2005)
      PUBMED   15608211
   REFERENCE   2  (bases 1 to 6264404)
     AUTHORS   Stover,C.K., Pham,X.-Q.T., Erwin,A.L., Mizoguchi,S.D., Warrener,P.,
               Hickey,M.J., Brinkman,F.S.L., Hufnagle,W.O., Kowalik,D.J.,
               Lagrou,M., Garber,R.L., Goltry,L., Tolentino,E.,
               Westbrook-Wadman,S., Yuan,Y., Brody,L.L., Coulter,S.N.,
               Folger,K.R., Kas,A., Larbig,K., Lim,R.M., Smith,K.A., Spencer,D.H.,
               Wong,G.K.-S., Wu,Z., Paulsen,I.T., Reizer,J., Saier,M.H.,
               Hancock,R.E.W., Lory,S. and Olson,M.V.
     TITLE     Complete genome sequence of Pseudomonas aeruginosa PA01, an
               opportunistic pathogen
     JOURNAL   Nature 406 (6799), 959-964 (2000)
      PUBMED   10984043
   REFERENCE   3  (bases 1 to 6264404)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 6264404)
     AUTHORS   Stover,C.K., Pham,X.-Q.T., Erwin,A.L., Mizoguchi,S.D., Warrener,P.,
               Hickey,M.J., Brinkman,F.S.L., Hufnagle,W.O., Kowalik,D.J.,
               Lagrou,M., Garber,R.L., Goltry,L., Tolentino,E.,
               Westbrock-Wadman,S., Yuan,Y., Brody,L.L., Coulter,S.N.,
               Folger,K.R., Kas,A., Larbig,K., Lim,R.M., Smith,K.A., Spencer,D.H.,
               Wong,G.K.-S., Wu,Z., Paulsen,I.T., Reizer,J., Saier,M.H.,
               Hancock,R.E.W., Lory,S. and Olson,M.V.
     TITLE     Direct Submission
     JOURNAL   Submitted (16-MAY-2000) Department of Medicine and Genetics,
               University of Washington Genome Center, University Of Washington,
               Box 352145, Seattle, WA 98195, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE004091.
               On Jul 24, 2006 this sequence version replaced gi:15595198.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
298816	298892	-	77	110645304	PA0263.1	-	^{11 Arg tRNA}
586867	586990	+	124	110645304	PA0527.1	-	regulatory RNA RsmY
630434	630510	-	77	110645304	PA0574.1	-	^{16 Met tRNA}
722096	723631	+	1536	110645304	PA0668.1	-	16S ribosomal RNA
723696	723772	+	77	110645304	PA0668.2	-	^{14 Ile tRNA}
723801	723876	+	76	110645304	PA0668.3	-	^{02 Ala tRNA}
724103	726993	+	2891	110645304	PA0668.4	-	23S ribosomal RNA
727136	727255	+	120	110645304	PA0668.5	-	5S ribosomal RNA
797721	797794	-	74	110645304	PA0729.1	-	^{01 Gly tRNA}
901520	901872	-	353	110645304	PA0826.2	-	tmRNA
991260	991350	+	91	110645304	PA0905.1	-	^{08 Ser tRNA}
991468	991544	+	77	110645304	PA0905.2	-	^{11 Arg tRNA}
991656	991732	+	77	110645304	PA0905.3	-	^{11 Arg tRNA}
1007727	1007803	-	77	110645304	PA0922.1	-	^{16 Met tRNA}
1060356	1060431	+	76	110645304	PA0976.1	-	^{10 Lys tRNA}
1096867	1096956	+	90	110645304	PA1013.1	-	^{08 Ser tRNA}
1668840	1669799	+	960	110645304	PA1530.1	-	4.5S ribosomal RNA
1947320	1947396	+	77	110645304	PA1796.1	-	^{11 Arg tRNA}
1947448	1947523	+	76	110645304	PA1796.2	-	^{09 His tRNA}
1947578	1947662	+	85	110645304	PA1796.3	-	^{15 Leu tRNA}
1947729	1947804	+	76	110645304	PA1796.4	-	^{09 His tRNA}
1959083	1959159	+	77	110645304	PA1804.1	-	^{06 Asp tRNA}
2905965	2906051	-	87	110645304	PA2570.1	-	^{15 Leu tRNA}
2918603	2918676	-	74	110645304	PA2581.1	-	^{19 Cys tRNA}
2923222	2923297	-	76	110645304	PA2583.1	-	^{01 Gly tRNA}
2947583	2947672	-	90	110645304	PA2603.1	-	^{08 Ser tRNA}
3099306	3099382	-	77	110645304	PA2736.1	-	^{03 Pro tRNA}
3133449	3133525	-	77	110645304	PA2775.1	-	^{13 Val tRNA}
3173599	3173674	-	76	110645304	PA2819.1	-	^{01 Gly tRNA}
3173759	3173834	-	76	110645304	PA2819.2	-	^{01 Gly tRNA}
3173837	3173912	-	76	110645304	PA2819.3	-	^{04 Glu tRNA}
3206408	3206497	+	90	110645304	PA2852.1	-	^{08 Ser tRNA}
3395190	3395266	+	77	110645304	PA3031.1	-	^{03 Pro tRNA}
3475457	3475533	-	77	110645304	PA3094.1	-	^{06 Asp tRNA}
3475648	3475724	-	77	110645304	PA3094.2	-	^{06 Asp tRNA}
3475741	3475816	-	76	110645304	PA3094.3	-	^{13 Val tRNA}
3514723	3514798	-	76	110645304	PA3133.1	-	^{04 Glu tRNA}
3514845	3514920	-	76	110645304	PA3133.2	-	^{02 Ala tRNA}
3515014	3515089	-	76	110645304	PA3133.3	-	^{04 Glu tRNA}
3515138	3515213	-	76	110645304	PA3133.4	-	^{02 Ala tRNA}
3524012	3524087	+	76	110645304	PA3139.1	-	^{07 Asn tRNA}
3650722	3650798	-	77	110645304	PA3262.1	-	^{06 Asp tRNA}
3650815	3650890	-	76	110645304	PA3262.2	-	^{13 Val tRNA}
3778654	3778730	-	77	110645304	PA3368.1	-	^{11 Arg tRNA}
4057543	4057658	-	116	110645304	PA3621.1	-	regulatory RNA RsmZ
4281665	4281751	+	87	110645304	PA3824.1	-	^{15 Leu tRNA}
4784184	4784259	-	76	110645304	PA4276.1	-	^{20 Trp tRNA}
4785593	4785668	-	76	110645304	PA4277.1	-	^{12 Thr tRNA}
4785688	4785761	-	74	110645304	PA4277.2	-	^{01 Gly tRNA}
4785788	4785872	-	85	110645304	PA4277.3	-	^{18 Tyr tRNA}
4788574	4788693	-	120	110645304	PA4280.1	-	5S ribosomal RNA
4788836	4791724	-	2889	110645304	PA4280.2	-	23S ribosomal RNA
4791951	4792026	-	76	110645304	PA4280.3	-	^{02 Ala tRNA}
4792055	4792131	-	77	110645304	PA4280.4	-	^{14 Ile tRNA}
4792196	4793731	-	1536	110645304	PA4280.5	-	16S ribosomal RNA
5068932	5069007	-	76	110645304	PA4524.1	-	^{12 Thr tRNA}
5086925	5087000	-	76	110645304	PA4541.1	-	^{10 Lys tRNA}
5087011	5087087	-	77	110645304	PA4541.2	-	^{03 Pro tRNA}
5087097	5087172	-	76	110645304	PA4541.3	-	^{07 Asn tRNA}
5131082	5131155	+	74	110645304	PA4581.1	-	^{11 Arg tRNA}
5238277	5238351	+	75	110645304	PA4669.1	-	^{05 Gln tRNA}
5242026	5242102	+	77	110645304	PA4673.1	-	^{16 Met tRNA}
5264100	5264219	-	120	110645304	PA4690.1	-	5S ribosomal RNA
5264362	5267252	-	2891	110645304	PA4690.2	-	23S ribosomal RNA
5267479	5267554	-	76	110645304	PA4690.3	-	^{02 Ala tRNA}
5267583	5267659	-	77	110645304	PA4690.4	-	^{14 Ile tRNA}
5267724	5269259	-	1536	110645304	PA4690.5	-	16S ribosomal RNA
5283960	5284110	+	151	110645304	PA4704.1	-	regulatory RNA PrrF1
5284172	5284319	+	148	110645304	PA4704.2	-	regulatory RNA PrrF2
5332087	5332163	-	77	110645304	PA4746.1	-	^{16 Met tRNA}
5332254	5332339	-	86	110645304	PA4746.2	-	^{15 Leu tRNA}
5387766	5387857	-	92	110645304	PA4802.1	-	Sec tRNA
5541614	5541700	+	87	110645304	PA4937.1	-	^{15 Leu tRNA}
5541830	5541916	+	87	110645304	PA4937.2	-	^{15 Leu tRNA}
5798560	5798635	+	76	110645304	PA5149.1	-	^{17 Phe tRNA}
5809970	5810045	+	76	110645304	PA5160.1	-	^{12 Thr tRNA}
6039584	6039703	-	120	110645304	PA5369.1	-	5S ribosomal RNA
6039846	6042736	-	2891	110645304	PA5369.2	-	23S ribosomal RNA
6042963	6043038	-	76	110645304	PA5369.3	-	^{02 Ala tRNA}
6043067	6043143	-	77	110645304	PA5369.4	-	^{14 Ile tRNA}
6043208	6044743	-	1536	110645304	PA5369.5	-	16S ribosomal RNA