Материалы:NC 002695

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   LOCUS       NC_002695            5498450 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Escherichia coli O157:H7 str. Sakai, complete genome.
   ACCESSION   NC_002695
   VERSION     NC_002695.1  GI:15829254
   KEYWORDS    .
   SOURCE      Escherichia coli O157:H7 str. Sakai
     ORGANISM  Escherichia coli O157:H7 str. Sakai
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Escherichia.
   REFERENCE   1  (sites)
     AUTHORS   Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K.,
               Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T.,
               Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C.,
               Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and
               Shinagawa,H.
     TITLE     Complete genome sequence of enterohemorrhagic Escherichia coli
               O157:H7 and genomic comparison with a laboratory strain K-12
     JOURNAL   DNA Res. 8 (1), 11-22 (2001)
      PUBMED   11258796
     REMARK    Erratum:[DNA Res 2001 Apr 27;8(2):96]
   REFERENCE   2  (sites)
     AUTHORS   Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S.,
               Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Abe,H., Iida,T.,
               Yamamoto,K., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and
               Shinagawa,H.
     TITLE     Complete nucleotide sequence of the prophage VT1-Sakai carrying the
               Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli
               O157:H7 strain derived from the Sakai outbreak
     JOURNAL   Gene 258 (1-2), 127-139 (2000)
      PUBMED   11111050
   REFERENCE   3  (sites)
     AUTHORS   Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M.,
               Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and
               Hayashi,T.
     TITLE     Comparative analysis of the whole set of rRNA operons between an
               enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an
               Escherichia coli K-12 strain MG1655
     JOURNAL   Syst. Appl. Microbiol. 23 (3), 315-324 (2000)
      PUBMED   11108008
   REFERENCE   4  (sites)
     AUTHORS   Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S.,
               Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T.,
               Yamamoto,K., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T.,
               Sasakawa,C. and Shinagawa,H.
     TITLE     Complete nucleotide sequence of the prophage VT2-Sakai carrying the
               verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7
               derived from the Sakai outbreak
     JOURNAL   Genes Genet. Syst. 74 (5), 227-239 (1999)
      PUBMED   10734605
   REFERENCE   5  (bases 1 to 5498450)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   6  (bases 1 to 5498450)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUN-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BA000007.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
227102 228643 + 1542 15829254 ECs5366 - 16S ribosomal RNA
228712 228788 + 77 15829254 ECs5367 - 14 Ile tRNA
228831 228906 + 76 15829254 ECs5368 - 02 Ala tRNA
229090 231992 + 2903 15829254 ECs5369 - 23S ribosomal RNA
232085 232204 + 120 15829254 ECs5370 - 5S ribosomal RNA
232257 232333 + 77 15829254 ECs5371 - 06 Asp tRNA
240481 240557 + 77 15829254 ECs5372 - 06 Asp tRNA
299982 300057 + 76 15829254 ECs5373 - 12 Thr tRNA
542513 542626 + 114 15829254 ECs5378 - 4.5S RNA
657182 657258 + 77 15829254 ECs5379 - 11 Arg tRNA
776591 776665 - 75 15829254 ECs5384 - 05 Gln tRNA
776703 776777 - 75 15829254 ECs5385 - 05 Gln tRNA
776826 776902 - 77 15829254 ECs5386 - 16 Met tRNA
776918 776992 - 75 15829254 ECs5387 - 05 Gln tRNA
777027 777101 - 75 15829254 ECs5388 - 05 Gln tRNA
777125 777209 - 85 15829254 ECs5389 - 15 Leu tRNA
777220 777296 - 77 15829254 ECs5390 - 16 Met tRNA
864979 865054 + 76 15829254 ECs5392 - 10 Lys tRNA
865090 865165 + 76 15829254 ECs5393 - 13 Val tRNA
865168 865243 + 76 15829254 ECs5394 - 10 Lys tRNA
865295 865370 + 76 15829254 ECs5395 - 13 Val tRNA
865374 865449 + 76 15829254 ECs5396 - 10 Lys tRNA
865596 865671 + 76 15829254 ECs5397 - 10 Lys tRNA
1056961 1057048 - 88 15829254 ECs5401 - 08 Ser tRNA
1165731 1165783 - 53 15829254 ECs5402 - DicF antisense RNA
1179418 1179493 + 76 15829254 ECs5403 - 14 Ile tRNA
1179501 1179577 + 77 15829254 ECs5404 - 11 Arg tRNA
1179591 1179667 + 77 15829254 ECs5405 - 11 Arg tRNA
1210746 1210833 - 88 15829254 ECs5407 - 08 Ser tRNA
1266623 1266698 + 76 15829254 ECs5408 - 14 Ile tRNA
1266708 1266784 + 77 15829254 ECs5409 - 11 Arg tRNA
1266798 1266874 + 77 15829254 ECs5410 - 11 Arg tRNA
1456705 1456792 - 88 15829254 ECs5416 - 08 Ser tRNA
1732289 1732373 - 85 15829254 ECs5424 - 18 Tyr tRNA
1732583 1732667 - 85 15829254 ECs5425 - 18 Tyr tRNA
1762085 1762135 - 51 15829254 ECs5427 - DicF
1773942 1774017 + 76 15829254 ECs5429 - 14 Ile tRNA
1774098 1774174 + 77 15829254 ECs5430 - 11 Arg tRNA
1940568 1940643 + 76 15829254 ECs5434 - 14 Ile tRNA
1940651 1940730 + 80 15829254 ECs5435 - Xaa tRNA
1940744 1940820 + 77 15829254 ECs5436 - 11 Arg tRNA
2189515 2189591 - 77 15829254 ECs5447 - 11 Arg tRNA
2189605 2189684 - 80 15829254 ECs5448 - Xaa tRNA
2189692 2189767 - 76 15829254 ECs5449 - 14 Ile tRNA
2201444 2201496 + 53 15829254 ECs5450 - DicF
2240486 2240562 - 77 15829254 ECs5453 - 11 Arg tRNA
2240576 2240652 - 77 15829254 ECs5454 - 11 Arg tRNA
2240660 2240735 - 76 15829254 ECs5455 - 14 Ile tRNA
2250670 2250722 + 53 15829254 ECs5459 - DicF antisense RNA
2346146 2346222 + 77 15829254 ECs5461 - 13 Val tRNA
2346227 2346303 + 77 15829254 ECs5462 - 13 Val tRNA
2614087 2614173 - 87 15829254 ECs5466 - 15 Leu tRNA
2614186 2614259 - 74 15829254 ECs5467 - 19 Cys tRNA
2614313 2614388 - 76 15829254 ECs5468 - 01 Gly tRNA
2649773 2649859 - 87 15829254 ECs5469 - anti-sense RNA silencer of rcsA gene
2697756 2697832 - 77 15829254 ECs5471 - 11 Arg tRNA
2697846 2697922 - 77 15829254 ECs5472 - 11 Arg tRNA
2697930 2698005 - 76 15829254 ECs5473 - 14 Ile tRNA
2712036 2712125 - 90 15829254 ECs5474 - 08 Ser tRNA
2713117 2713192 + 76 15829254 ECs5475 - 07 Asn tRNA
2727498 2727573 - 76 15829254 ECs5476 - 07 Asn tRNA
2729322 2729397 + 76 15829254 ECs5477 - 07 Asn tRNA
2731730 2731805 + 76 15829254 ECs5478 - 07 Asn tRNA
3021141 3021217 + 77 15829254 ECs5483 - 03 Pro tRNA
3046071 3046163 + 93 15829254 ECs5485 - MicF
3192908 3192982 + 75 15829254 ECs5488 - 11 Arg tRNA
3244824 3244899 - 76 15829254 ECs5489 - 02 Ala tRNA
3244939 3245014 - 76 15829254 ECs5490 - 02 Ala tRNA
3249460 3249535 + 76 15829254 ECs5491 - 13 Val tRNA
3249580 3249655 + 76 15829254 ECs5492 - 13 Val tRNA
3249702 3249777 + 76 15829254 ECs5493 - 13 Val tRNA
3249782 3249857 + 76 15829254 ECs5494 - 10 Lys tRNA
3446266 3446385 - 120 15829254 ECs5499 - 5S ribosomal RNA
3446478 3449380 - 2903 15829254 ECs5500 - 23S ribosomal RNA
3449574 3449649 - 76 15829254 ECs5501 - 04 Glu tRNA
3449735 3451276 - 1542 15829254 ECs5502 - 16S ribosomal RNA
3475507 3475962 + 456 15829254 ECs5503 - tmRNA
3507947 3508022 - 76 15829254 ECs5504 - 14 Ile tRNA
3541942 3542018 - 77 15829254 ECs5505 - 11 Arg tRNA
3542121 3542197 - 77 15829254 ECs5506 - 11 Arg tRNA
3542260 3542336 - 77 15829254 ECs5507 - 11 Arg tRNA
3542401 3542477 - 77 15829254 ECs5508 - 11 Arg tRNA
3542481 3542573 - 93 15829254 ECs5509 - 08 Ser tRNA
3646556 3646924 - 369 15829254 ECs5510 - CsrB
3665096 3665208 + 113 15829254 ECs5511 - GcvB
3669787 3669863 + 77 15829254 ECs5512 - 16 Met tRNA
3669897 3669973 + 77 15829254 ECs5513 - 16 Met tRNA
3670007 3670083 + 77 15829254 ECs5514 - 16 Met tRNA
3737314 3737387 - 74 15829254 ECs5515 - 01 Gly tRNA
3793112 3793295 + 184 15829254 ECs5516 - 6S RNA
3851960 3852035 + 76 15829254 ECs5517 - 17 Phe tRNA
3955129 3955204 + 76 15829254 ECs5519 - 14 Ile tRNA
4009451 4009827 - 377 15829254 ECs5520 - Rnase P RNA
4060711 4060787 - 77 15829254 ECs5521 - 16 Met tRNA
4064570 4064656 - 87 15829254 ECs5522 - 15 Leu tRNA
4158428 4158547 - 120 15829254 ECs5523 - 5S ribosomal RNA
4158585 4158660 - 76 15829254 ECs5524 - 12 Thr tRNA
4158673 4158792 - 120 15829254 ECs5525 - 5S ribosomal RNA
4158885 4161787 - 2903 15829254 ECs5526 - 23S ribosomal RNA
4161971 4162046 - 76 15829254 ECs5527 - 02 Ala tRNA
4162089 4162165 - 77 15829254 ECs5528 - 14 Ile tRNA
4162234 4163775 - 1542 15829254 ECs5529 - 16S ribosomal RNA
4450439 4450515 - 77 15829254 ECs5535 - 03 Pro tRNA
4580769 4580863 + 95 15829254 ECs5538 - Sec tRNA
4735252 4736793 + 1542 15829254 ECs5543 - 16S ribosomal RNA
4736879 4736954 + 76 15829254 ECs5544 - 04 Glu tRNA
4737148 4740052 + 2905 15829254 ECs5545 - 23S ribosomal RNA
4740145 4740264 + 120 15829254 ECs5546 - 5S ribosomal RNA
4740317 4740392 + 76 15829254 ECs5547 - 06 Asp tRNA
4740401 4740476 + 76 15829254 ECs5548 - 20 Trp tRNA
4775781 4775857 + 77 15829254 ECs5550 - 11 Arg tRNA
4775916 4775991 + 76 15829254 ECs5551 - 09 His tRNA
4776012 4776098 + 87 15829254 ECs5552 - 15 Leu tRNA
4776142 4776215 + 74 15829254 ECs5553 - Xaa tRNA
4776238 4776324 + 87 15829254 ECs5554 - 15 Leu tRNA
4776367 4776442 + 76 15829254 ECs5555 - 03 Pro tRNA
4831654 4833195 + 1542 15829254 ECs5557 - 16S ribosomal RNA
4833264 4833340 + 77 15829254 ECs5558 - 14 Ile tRNA
4833383 4833458 + 76 15829254 ECs5559 - 02 Ala tRNA
4833642 4836546 + 2905 15829254 ECs5560 - 23S ribosomal RNA
4836639 4836758 + 120 15829254 ECs5561 - 5S ribosomal RNA
4845852 4845960 + 109 15829254 ECs5563 - Spot 42 RNA
4964922 4965031 - 110 15829254 ECs5566 - OxyS RNA
4975927 4977468 + 1542 15829254 ECs5567 - 16S ribosomal RNA
4977554 4977629 + 76 15829254 ECs5568 - 04 Glu tRNA
4977823 4980727 + 2905 15829254 ECs5569 - 23S ribosomal RNA
4980820 4980939 + 120 15829254 ECs5570 - 5S ribosomal RNA
4984405 4984480 + 76 15829254 ECs5571 - 12 Thr tRNA
4984489 4984573 + 85 15829254 ECs5572 - 18 Tyr tRNA
4984690 4984764 + 75 15829254 ECs5573 - 01 Gly tRNA
4984771 4984846 + 76 15829254 ECs5574 - 12 Thr tRNA
5016953 5018494 + 1542 15829254 ECs5576 - 16S ribosomal RNA
5018580 5018655 + 76 15829254 ECs5577 - 04 Glu tRNA
5018849 5021753 + 2905 15829254 ECs5578 - 23S ribosomal RNA
5021846 5021965 + 120 15829254 ECs5579 - 5S ribosomal RNA
5217002 5217077 - 76 15829254 ECs5585 - 17 Phe tRNA
5246085 5246160 + 76 15829254 ECs5587 - 01 Gly tRNA
5246197 5246272 + 76 15829254 ECs5588 - 01 Gly tRNA
5246308 5246383 + 76 15829254 ECs5589 - 01 Gly tRNA
5346999 5347083 + 85 15829254 ECs5590 - 15 Leu tRNA
5464439 5464525 - 87 15829254 ECs5594 - 15 Leu tRNA