Материалы:NC 003197

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   LOCUS       NC_003197            4857432 bp    DNA     circular BCT 13-APR-2007
   DEFINITION  Salmonella typhimurium LT2, complete genome.
   ACCESSION   NC_003197
   VERSION     NC_003197.1  GI:16763390
   KEYWORDS    .
   SOURCE      Salmonella typhimurium LT2
     ORGANISM  Salmonella typhimurium LT2
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Salmonella.
   REFERENCE   1  (bases 1 to 4857432)
     AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
               Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
               Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
               Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
               Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
     TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
               LT2
     JOURNAL   Nature 413 (6858), 852-856 (2001)
      PUBMED   11677609
   REFERENCE   2  (bases 1 to 4857432)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4857432)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE006468.
               COMPLETENESS: full length.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to original submitter provided annotation; tRNA
               sequences predicted using tRNAscan-SE 1.21.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
289189 290732 + 1544 16763390 STM0249 - 16S ribosomal RNA
290800 290873 + 74 16763390 STM0250 - 14 Ile tRNA
290976 291051 + 76 16763390 STM0251 - 02 Ala tRNA
291244 294336 + 3093 16763390 STM0252 - 23S ribosomal RNA
294519 294640 + 122 16763390 STM0253 - 5S ribosomal RNA
294838 294911 + 74 16763390 STM0254 - 13 Val tRNA
304277 304350 + 74 16763390 STM0265 - Sec tRNA
368806 368878 + 73 16763390 STM0323 - 12 Thr tRNA
524424 524539 + 116 16763390 STM0467 - 4.5S ribosomal RNA
613567 613640 + 74 16763390 STM0553 - 11 Arg tRNA
617984 618056 + 73 16763390 STM05559.T1 -
738011 738082 - 72 16763390 STM0673 - 05 Gln tRNA
738129 738200 - 72 16763390 STM0674 - 05 Gln tRNA
738250 738323 - 74 16763390 STM0675 - 16 Met tRNA
738342 738413 - 72 16763390 STM0676 - 05 Gln tRNA
738452 738523 - 72 16763390 STM0677 - 05 Gln tRNA
738550 738631 - 82 16763390 STM0678 - 15 Leu tRNA
738643 738716 - 74 16763390 STM0679 - 16 Met tRNA
818775 818847 + 73 16763390 STM0751 - 10 Lys tRNA
818982 819054 + 73 16763390 STM0752 - 13 Val tRNA
819061 819133 + 73 16763390 STM0753 - 10 Lys tRNA
819186 819258 + 73 16763390 STM0754 - 10 Lys tRNA
819396 819468 + 73 16763390 STM0755 - 10 Lys tRNA
1027441 1027525 - 85 16763390 STM0949 - 08 Ser tRNA
1175321 1175405 + 85 16763390 STM1086 - 08 Ser tRNA
1224743 1224827 - 85 16763390 STM1134 - 08 Ser tRNA
1333209 1333282 + 74 16763390 STM1247 - Xaa tRNA
1345647 1345720 + 74 16763390 STM1262 - Xaa tRNA
1444831 1444937 - 107 16763390 STM1363 - regulatory RNA
1501640 1501713 - 74 16763390 STM1423 - 13 Val tRNA
1501727 1501800 - 74 16763390 STM1424 - 13 Val tRNA
1852570 1852651 + 82 16763390 STM1757 - 18 Tyr tRNA
1852683 1852825 + 143 16763390 STM1758 - regulatory RNA
1852859 1852940 + 82 16763390 STM1759 - 18 Tyr tRNA
2035366 2035449 - 84 16763390 STM1942 - 15 Leu tRNA
2035464 2035534 - 71 16763390 STM1943 - 19 Cys tRNA
2035590 2035662 - 73 16763390 STM1944 - 01 Gly tRNA
2068650 2068733 - 84 16763390 STM1985 - small regulatory RNA DsrA
2082177 2082263 - 87 16763390 STM2000 - 08 Ser tRNA
2083250 2083322 + 73 16763390 STM2002 - 07 Asn tRNA
2084220 2084292 + 73 16763390 STM2004 - 07 Asn tRNA
2094165 2094237 - 73 16763390 STM2012 - 07 Asn tRNA
2095995 2096067 + 73 16763390 STM2014 - 07 Asn tRNA
2330749 2330822 + 74 16763390 STM2229 - 03 Pro tRNA
2366830 2367005 - 176 16763390 STM2268 - regulatory RNA
2505822 2505893 + 72 16763390 STM2394 - 11 Arg tRNA
2528939 2529011 - 73 16763390 STM2411 - 02 Ala tRNA
2529057 2529129 - 73 16763390 STM2412 - 02 Ala tRNA
2531835 2531907 + 73 16763390 STM2416 - 13 Val tRNA
2531956 2532028 + 73 16763390 STM2417 - 13 Val tRNA
2532073 2532145 + 73 16763390 STM2418 - 13 Val tRNA
2532153 2532225 + 73 16763390 STM2419 - 10 Lys tRNA
2761647 2761720 - 74 16763390 STM2615 - Xaa tRNA
2796440 2796561 - 122 16763390 STM2656 - 5S ribosomal RNA
2796755 2799764 - 3010 16763390 STM2657 - 23S ribosomal RNA
2799958 2800030 - 73 16763390 STM2658 - Sec tRNA
2800118 2801660 - 1543 16763390 STM2659 - 16S ribosomal RNA
2844218 2844312 + 95 16763390 STM2693 - regulatory RNA
2969928 2970001 - 74 16763390 STM2821 - 11 Arg tRNA
2970198 2970271 - 74 16763390 STM2822 - 11 Arg tRNA
2970337 2970410 - 74 16763390 STM2823 - 11 Arg tRNA
2970476 2970549 - 74 16763390 STM2824 - 11 Arg tRNA
2970556 2970645 - 90 16763390 STM2825 - 08 Ser tRNA
3116696 3117050 - 355 16763390 STM2966 - regulatory RNA
3141064 3141137 + 74 16763390 STM2989 - 16 Met tRNA
3141170 3141243 + 74 16763390 STM2990 - 16 Met tRNA
3197425 3197495 - 71 16763390 STM3037 - 01 Gly tRNA
3276146 3276218 + 73 16763390 STM3116 - 17 Phe tRNA
3379004 3379076 + 73 16763390 STM3213 - 16 Met tRNA Неверная идентификация
3414803 3415179 + 377 16763390 STM3246 - regulatory RNA
3458506 3458579 - 74 16763390 STM3289 - 16 Met tRNA
3461755 3461838 - 84 16763390 STM3292 - 15 Leu tRNA
3566622 3566743 - 122 16763390 STM3393 - 5S ribosomal RNA
3566784 3566856 - 73 16763390 STM3394 - 12 Thr tRNA
3566867 3566988 - 122 16763390 STM3395 - 5S ribosomal RNA
3567078 3570071 - 2994 16763390 STM3396 - 23S ribosomal RNA
3570307 3570379 - 73 16763390 STM3397 - 05 Gln tRNA
3570463 3572006 - 1544 16763390 STM3398 - 16S ribosomal RNA
3820412 3820485 - 74 16763390 STM3634 - 03 Pro tRNA
3948576 3948666 + 91 16763390 STM3751 - Sec tRNA
4100132 4101675 + 1544 16763390 STM3889 - 16S ribosomal RNA
4101759 4101831 + 73 16763390 STM3890 - 20 Trp tRNA
4102028 4105021 + 2994 16763390 STM3891 - 23S ribosomal RNA
4105028 4105126 + 99 16763390 STM3893 - regulatory RNA
4105111 4105230 + 120 16763390 STM3894 - 5S ribosomal RNA
4105283 4105362 + 80 16763390 STM3895 - Sec tRNA
4105368 4105440 + 73 16763390 STM3896 - Xaa tRNA
4140908 4140981 + 74 16763390 STM3931 - 11 Arg tRNA
4141039 4141111 + 73 16763390 STM3932 - 09 His tRNA
4141135 4141218 + 84 16763390 STM3933 - 15 Leu tRNA
4141264 4141337 + 74 16763390 STM3934 - 03 Pro tRNA
4196059 4197600 + 1542 16763390 STM3988 - 16S ribosomal RNA
4197670 4197743 + 74 16763390 STM3989 - 14 Ile tRNA
4197858 4197930 + 73 16763390 STM3990 - 02 Ala tRNA
4198116 4201110 + 2995 16763390 STM3991 - 23S ribosomal RNA
4201302 4201423 + 122 16763390 STM3992 - 5S ribosomal RNA
4209066 4209131 + 66 16763390 STM4000 - spot 42 RNA
4351130 4352673 + 1544 16763390 STM4132 - 16S ribosomal RNA
4352741 4352814 + 74 16763390 STM4133 - 13 Val tRNA
4352929 4353001 + 73 16763390 STM4134 - 02 Ala tRNA
4353187 4356180 + 2994 16763390 STM4135 - 23S ribosomal RNA
4356373 4356493 + 121 16763390 STM4136 - 5S ribosomal RNA
4360046 4360118 + 73 16763390 STM4142 - 12 Thr tRNA
4360130 4360211 + 82 16763390 STM4143 - 18 Tyr tRNA
4360331 4360402 + 72 16763390 STM4144 - 01 Gly tRNA
4360412 4360484 + 73 16763390 STM4145 - 12 Thr tRNA
4394675 4396219 + 1545 16763390 STM4177 - 16S ribosomal RNA
4396303 4396375 + 73 16763390 STM4178 - Sec tRNA
4396611 4399604 + 2994 16763390 STM4179 - 23S ribosomal RNA
4399797 4399918 + 122 16763390 STM4180 - 5S ribosomal RNA
4566577 4566649 - 73 16763390 STM4321 - 17 Phe tRNA
4596412 4596484 + 73 16763390 STM4352 - 01 Gly tRNA
4596644 4596716 + 73 16763390 STM4353 - 01 Gly tRNA
4596876 4596948 + 73 16763390 STM4354 - 01 Gly tRNA
4730996 4731077 + 82 16763390 STM4487 - 15 Leu tRNA
4810613 4810696 - 84 16763390 STM4553 - 15 Leu tRNA
4810731 4810814 - 84 16763390 STM4554 - 15 Leu tRNA
4810845 4810928 - 84 16763390 STM4555 - 15 Leu tRNA