Материалы:NC 004347

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   LOCUS       NC_004347            4969803 bp    DNA     circular BCT 20-JUN-2007
   DEFINITION  Shewanella oneidensis MR-1, complete genome.
   ACCESSION   NC_004347
   VERSION     NC_004347.1  GI:24371600
   KEYWORDS    .
   SOURCE      Shewanella oneidensis MR-1
     ORGANISM  Shewanella oneidensis MR-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4969803)
     AUTHORS   Daraselia,N., Dernovoy,D., Tian,Y., Borodovsky,M., Tatusov,R. and
               Tatusova,T.
     TITLE     Reannotation of Shewanella oneidensis genome
     JOURNAL   OMICS 7 (2), 171-175 (2003)
      PUBMED   14506846
   REFERENCE   2  (bases 1 to 4969803)
     AUTHORS   Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W.,
               Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R.,
               Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
               DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R.,
               Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J.,
               Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,
               Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T.,
               Smith,H., Venter,J., Nealson,K. and Fraser,C.
     TITLE     Genome sequence of the dissimilatory metal ion-reducing bacterium
               Shewanella oneidensis
     JOURNAL   Nat. Biotechnol. 20 (11), 1118-1123 (2002)
      PUBMED   12368813
   REFERENCE   3  (bases 1 to 4969803)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-OCT-2002) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4969803)
     AUTHORS   Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W.,
               Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R.,
               Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
               DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R.,
               Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J.,
               Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,
               Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T.,
               Smith,H., Venter,J., Nealson,K. and Fraser,C.
     TITLE     Direct Submission
     JOURNAL   Submitted (12-SEP-2002) The Institute for Genomic Research, 9712
               Medical Center Dr., Rockville, MD 20850, USA
   COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
               reference sequence was derived from AE014299.
               REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
               with comparison to orginal submitter provided annotation.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
46116	47644	+	1529	24371600	SO_r001	-	16S ribosomal RNA
47961	50853	+	2893	24371600	SO_r002	-	23S ribosomal RNA
51057	51176	+	120	24371600	SO_r003	-	5S ribosomal RNA
51211	51287	+	77	24371600	SO_t001	-	^{06 Asp tRNA}
117553	117643	-	91	24371600	SO_t002	-	Sec tRNA
216788	218316	+	1529	24371600	SO_r004	-	16S ribosomal RNA
218392	218468	+	77	24371600	SO_t003	-	^{14 Ile tRNA}
218607	218682	+	76	24371600	SO_t004	-	^{02 Ala tRNA}
218957	221849	+	2893	24371600	SO_r005	-	23S ribosomal RNA
222053	222172	+	120	24371600	SO_r006	-	5S ribosomal RNA
226804	226879	+	76	24371600	SO_t005	-	^{12 Thr tRNA}
226887	226971	+	85	24371600	SO_t006	-	^{18 Tyr tRNA}
227006	227079	+	74	24371600	SO_t007	-	^{01 Gly tRNA}
227089	227164	+	76	24371600	SO_t008	-	^{12 Thr tRNA}
269814	271342	+	1529	24371600	SO_r007	-	16S ribosomal RNA
271658	274551	+	2894	24371600	SO_r008	-	23S ribosomal RNA
274755	274874	+	120	24371600	SO_r009	-	5S ribosomal RNA
620170	620245	+	76	24371600	SO_t009	-	^{01 Gly tRNA}
620370	620445	+	76	24371600	SO_t010	-	^{01 Gly tRNA}
620568	620643	+	76	24371600	SO_t011	-	^{01 Gly tRNA}
620770	620845	+	76	24371600	SO_t012	-	^{01 Gly tRNA}
1198589	1198665	+	77	24371600	SO_t013	-	^{20 Trp tRNA}
1229540	1229616	+	77	24371600	SO_t014	-	^{16 Met tRNA}
1229671	1229755	+	85	24371600	SO_t015	-	^{15 Leu tRNA}
1229802	1229876	+	75	24371600	SO_t016	-	^{05 Gln tRNA}
1229898	1229972	+	75	24371600	SO_t017	-	^{05 Gln tRNA}
1229974	1230050	+	77	24371600	SO_t018	-	^{16 Met tRNA}
1230132	1230216	+	85	24371600	SO_t019	-	^{15 Leu tRNA}
1230253	1230327	+	75	24371600	SO_t020	-	^{05 Gln tRNA}
1245541	1245627	+	87	24371600	SO_t021	-	^{15 Leu tRNA}
1245711	1245787	+	77	24371600	SO_t022	-	^{16 Met tRNA}
1335235	1335311	-	77	24371600	SO_t023	-	^{16 Met tRNA}
1880017	1880093	+	77	24371600	SO_t024	-	^{03 Pro tRNA}
1880184	1880260	+	77	24371600	SO_t025	-	^{11 Arg tRNA}
1880270	1880345	+	76	24371600	SO_t026	-	^{09 His tRNA}
1939976	1940052	-	77	24371600	SO_t027	-	^{16 Met tRNA}
1940200	1940276	-	77	24371600	SO_t028	-	^{16 Met tRNA}
1940424	1940500	-	77	24371600	SO_t029	-	^{16 Met tRNA}
1940538	1940614	-	77	24371600	SO_t030	-	^{16 Met tRNA}
1950041	1950131	+	91	24371600	SO_t031	-	^{08 Ser tRNA}
1951113	1951203	+	91	24371600	SO_t032	-	^{08 Ser tRNA}
1955125	1955200	+	76	24371600	SO_t033	-	^{01 Gly tRNA}
1955222	1955295	+	74	24371600	SO_t034	-	^{19 Cys tRNA}
1955344	1955430	+	87	24371600	SO_t035	-	^{15 Leu tRNA}
1955563	1955649	+	87	24371600	SO_t036	-	^{15 Leu tRNA}
2124193	2124269	+	77	24371600	SO_t037	-	^{03 Pro tRNA}
2235124	2235211	+	88	24371600	SO_t038	-	^{08 Ser tRNA}
2406959	2407035	-	77	24371600	SO_t039	-	^{13 Val tRNA}
2407073	2407149	-	77	24371600	SO_t040	-	^{13 Val tRNA}
2456843	2456918	+	76	24371600	SO_t041	-	^{01 Gly tRNA}
2456939	2457012	+	74	24371600	SO_t042	-	^{19 Cys tRNA}
2457062	2457148	+	87	24371600	SO_t043	-	^{15 Leu tRNA}
2477570	2477660	-	91	24371600	SO_t044	-	^{08 Ser tRNA}
2626488	2626572	+	85	24371600	SO_t045	-	^{18 Tyr tRNA}
2626612	2626696	+	85	24371600	SO_t046	-	^{18 Tyr tRNA}
2626814	2626898	+	85	24371600	SO_t047	-	^{18 Tyr tRNA}
2632847	2632922	+	76	24371600	SO_t048	-	^{07 Asn tRNA}
2632971	2633046	+	76	24371600	SO_t049	-	^{07 Asn tRNA}
2633078	2633153	+	76	24371600	SO_t050	-	^{07 Asn tRNA}
2633199	2633274	+	76	24371600	SO_t051	-	^{07 Asn tRNA}
2633320	2633395	+	76	24371600	SO_t052	-	^{07 Asn tRNA}
2687482	2687558	-	77	24371600	SO_t053	-	^{06 Asp tRNA}
2687616	2687692	-	77	24371600	SO_t054	-	^{06 Asp tRNA}
2866689	2866764	-	76	24371600	SO_t055	-	^{10 Lys tRNA}
2866798	2866873	-	76	24371600	SO_t056	-	^{10 Lys tRNA}
2867035	2867110	-	76	24371600	SO_t057	-	^{10 Lys tRNA}
2867144	2867219	-	76	24371600	SO_t058	-	^{10 Lys tRNA}
2867253	2867328	-	76	24371600	SO_t059	-	^{10 Lys tRNA}
2867362	2867452	-	91	24371600	SO_t060	-	^{10 Lys tRNA}
2867486	2867561	-	76	24371600	SO_t061	-	^{10 Lys tRNA}
2867616	2867691	-	76	24371600	SO_t062	-	^{10 Lys tRNA}
2969193	2969312	-	120	24371600	SO_r010	-	5S ribosomal RNA
2969516	2972408	-	2893	24371600	SO_r011	-	23S ribosomal RNA
2972683	2972758	-	76	24371600	SO_t063	-	^{02 Ala tRNA}
2972897	2972973	-	77	24371600	SO_t064	-	^{14 Ile tRNA}
2973049	2974577	-	1529	24371600	SO_r012	-	16S ribosomal RNA
3258460	3258535	-	76	24371600	SO_t065	-	^{04 Glu tRNA}
3258634	3258709	-	76	24371600	SO_t066	-	^{04 Glu tRNA}
3258809	3258884	-	76	24371600	SO_t067	-	^{04 Glu tRNA}
3258983	3259058	-	76	24371600	SO_t068	-	^{04 Glu tRNA}
3259137	3259212	-	76	24371600	SO_t069	-	^{04 Glu tRNA}
3259276	3259351	-	76	24371600	SO_t070	-	^{02 Ala tRNA}
3259459	3259534	-	76	24371600	SO_t071	-	^{04 Glu tRNA}
3259601	3259676	-	76	24371600	SO_t072	-	^{02 Ala tRNA}
3261718	3261793	+	76	24371600	SO_t073	-	^{13 Val tRNA}
3261842	3261917	+	76	24371600	SO_t074	-	^{13 Val tRNA}
3261945	3262020	+	76	24371600	SO_t075	-	^{13 Val tRNA}
3262066	3262141	+	76	24371600	SO_t076	-	^{13 Val tRNA}
3262168	3262243	+	76	24371600	SO_t077	-	^{13 Val tRNA}
3395143	3395218	+	76	24371600	SO_t078	-	^{11 Arg tRNA}
3513641	3513716	+	76	24371600	SO_t079	-	^{17 Phe tRNA}
3513738	3513813	+	76	24371600	SO_t080	-	^{12 Thr tRNA}
3514336	3514411	+	76	24371600	SO_t081	-	^{17 Phe tRNA}
3514433	3514508	+	76	24371600	SO_t082	-	^{12 Thr tRNA}
3566969	3567045	-	77	24371600	SO_t083	-	^{11 Arg tRNA}
3567141	3567232	-	92	24371600	SO_t084	-	^{08 Ser tRNA}
3567269	3567345	-	77	24371600	SO_t085	-	^{11 Arg tRNA}
3567389	3567465	-	77	24371600	SO_t086	-	^{11 Arg tRNA}
3567509	3567585	-	77	24371600	SO_t087	-	^{11 Arg tRNA}
3567669	3567745	-	77	24371600	SO_t088	-	^{11 Arg tRNA}
3567777	3567853	-	77	24371600	SO_t089	-	^{11 Arg tRNA}
3567874	3567965	-	92	24371600	SO_t090	-	^{08 Ser tRNA}
3734846	3734965	-	120	24371600	SO_r013	-	5S ribosomal RNA
3735169	3738061	-	2893	24371600	SO_r014	-	23S ribosomal RNA
3738378	3739906	-	1529	24371600	SO_r015	-	16S ribosomal RNA
3748013	3748088	+	76	24371600	SO_t091	-	^{17 Phe tRNA}
3748144	3748230	+	87	24371600	SO_t092	-	^{15 Leu tRNA}
3748272	3748358	+	87	24371600	SO_t093	-	^{15 Leu tRNA}
4035175	4035261	-	87	24371600	SO_t094	-	^{15 Leu tRNA}
4376975	4377094	-	120	24371600	SO_r016	-	5S ribosomal RNA
4377298	4380190	-	2893	24371600	SO_r017	-	23S ribosomal RNA
4380465	4380540	-	76	24371600	SO_t095	-	^{02 Ala tRNA}
4380679	4380755	-	77	24371600	SO_t096	-	^{14 Ile tRNA}
4380831	4382359	-	1529	24371600	SO_r018	-	16S ribosomal RNA
4512002	4512078	-	77	24371600	SO_t097	-	^{03 Pro tRNA}
4512132	4512208	-	77	24371600	SO_t098	-	^{03 Pro tRNA}
4512224	4512299	-	76	24371600	SO_t099	-	^{09 His tRNA}
4512352	4512428	-	77	24371600	SO_t100	-	^{11 Arg tRNA}
4679082	4679201	-	120	24371600	SO_r019	-	5S ribosomal RNA
4679233	4679308	-	76	24371600	SO_t101	-	^{12 Thr tRNA}
4679337	4679456	+	120	24371600	SO_r028	-	5S ribosomal RNA
4679660	4682552	-	2893	24371600	SO_r020	-	23S ribosomal RNA
4682869	4684397	-	1529	24371600	SO_r021	-	16S ribosomal RNA
4688336	4688412	-	77	24371600	SO_t102	-	^{06 Asp tRNA}
4688447	4688566	-	120	24371600	SO_r022	-	5S ribosomal RNA
4688770	4691662	-	2893	24371600	SO_r023	-	23S ribosomal RNA
4691979	4693507	-	1529	24371600	SO_r024	-	16S ribosomal RNA
4942369	4942488	-	120	24371600	SO_r025	-	5S ribosomal RNA
4942692	4945584	-	2893	24371600	SO_r026	-	23S ribosomal RNA
4945901	4947429	-	1529	24371600	SO_r027	-	16S ribosomal RNA