Материалы:NC 004631

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   LOCUS       NC_004631            4791961 bp    DNA     circular BCT 14-DEC-2006
   DEFINITION  Salmonella enterica subsp. enterica serovar Typhi Ty2, complete
               genome.
   ACCESSION   NC_004631
   VERSION     NC_004631.1  GI:29140543
   KEYWORDS    .
   SOURCE      Salmonella enterica subsp. enterica serovar Typhi Ty2
     ORGANISM  Salmonella enterica subsp. enterica serovar Typhi Ty2
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
               serovar Typhi.
   REFERENCE   1  (bases 1 to 4791961)
     AUTHORS   Deng,W., Liou,S.R., Plunkett III,G., Mayhew,G.F., Rose,D.J.,
               Burland,V., Kodoyianni,V., Schwartz,D.C. and Blattner,F.R.
     TITLE     Comparative Genomics of Salmonella enterica Serovar Typhi Strains
               Ty2 and CT18
     JOURNAL   J. Bacteriol. 185 (7), 2330-2337 (2003)
      PUBMED   12644504
   REFERENCE   2  (bases 1 to 4791961)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4791961)
     AUTHORS   Deng,W., Liou,S.-R., Plunkett,G. III, Mayhew,G.F., Rose,D.J.,
               Burland,V., Kodoyianni,V., Schwartz,D.C. and Blattner,F.R.
     TITLE     Direct Submission
     JOURNAL   Submitted (25-SEP-2002) Laboratory of Genetics, University of
               Wisconsin - Madison, 445 Henry Mall, Madison, WI 53706, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE014613.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
287477 289010 + 1534 29140543 t0252 - 16S ribosomal RNA
289097 289172 + 76 29140543 t0253 - 04 Glu tRNA
289366 292371 + 3006 29140543 t0254 - 23S ribosomal RNA
292472 292591 + 120 29140543 t4650 - 5S ribosomal RNA
511872 511947 - 76 29140543 t0438 - 10 Lys tRNA
511952 512027 - 76 29140543 t0439 - 13 Val tRNA
512069 512144 - 76 29140543 t0440 - 13 Val tRNA
512190 512265 - 76 29140543 t0441 - 13 Val tRNA
514971 515046 + 76 29140543 t0445 - 02 Ala tRNA
515089 515164 + 76 29140543 t0446 - 02 Ala tRNA
543845 543919 - 75 29140543 t0470 - 11 Arg tRNA
680758 681114 - 357 29140543 t4642 - MicF RNA; post-transcriptional regulator of ompF gene
707497 707573 - 77 29140543 t0625 - 03 Pro tRNA
951127 951202 - 76 29140543 t0861 - 07 Asn tRNA
952960 953035 + 76 29140543 t0863 - 07 Asn tRNA
978952 979027 - 76 29140543 t0873 - 07 Asn tRNA
979575 979650 - 76 29140543 t0876 - 07 Asn tRNA
980637 980726 + 90 29140543 t0878 - 08 Ser tRNA
994136 994216 + 81 29140543 t4641 - DsrA RNA
1026594 1026669 + 76 29140543 t0932 - 01 Gly tRNA
1026722 1026795 + 74 29140543 t0933 - 19 Cys tRNA
1026807 1026893 + 87 29140543 t0934 - 15 Leu tRNA
1200360 1200436 + 77 29140543 t1121 - 11 Arg tRNA
1212819 1212895 + 77 29140543 t1140 - 11 Arg tRNA
1356053 1356129 - 77 29140543 t1291 - 13 Val tRNA
1356140 1356216 - 77 29140543 t1292 - 13 Val tRNA
1846078 1846165 + 88 29140543 t1786 - 08 Ser tRNA
1895658 1895745 - 88 29140543 t1833 - 08 Ser tRNA
2043010 2043097 + 88 29140543 t1984 - 08 Ser tRNA
2187114 2187189 - 76 29140543 t2123 - 10 Lys tRNA
2187324 2187399 - 76 29140543 t2124 - 10 Lys tRNA
2187542 2187617 - 76 29140543 t2125 - 10 Lys tRNA
2266374 2266450 + 77 29140543 t2196 - 16 Met tRNA
2266459 2266543 + 85 29140543 t2197 - 15 Leu tRNA
2266567 2266641 + 75 29140543 t2198 - 05 Gln tRNA
2266677 2266751 + 75 29140543 t2199 - 05 Gln tRNA
2266767 2266843 + 77 29140543 t2200 - 16 Met tRNA
2266890 2266964 + 75 29140543 t2201 - 05 Gln tRNA
2375510 2375586 - 77 29140543 t2310 - 11 Arg tRNA
2463704 2463841 - 138 29140543 t4640 - 4.5S RNA; component of signal recognition particle
2602939 2603014 - 76 29140543 t2527 - 12 Thr tRNA
2677913 2677989 - 77 29140543 t2600 - 06 Asp tRNA
2687352 2687428 - 77 29140543 t2611 - 06 Asp tRNA
2687481 2687600 - 120 29140543 t4649 - 5S ribosomal RNA
2687701 2690706 - 3006 29140543 t2612 - 23S ribosomal RNA
2690889 2690964 - 76 29140543 t2613 - 02 Ala tRNA
2691076 2691152 - 77 29140543 t2614 - 14 Ile tRNA
2691223 2692757 - 1535 29140543 t2615 - 16S ribosomal RNA
2734381 2734847 + 467 29140543 t4643 - 10Sa tmRNA
2808679 2808755 - 77 29140543 t2719 - 11 Arg tRNA
2808952 2809028 - 77 29140543 t2721 - 11 Arg tRNA
2809091 2809167 - 77 29140543 t2723 - 11 Arg tRNA
2809230 2809307 - 78 29140543 t2725 - 11 Arg tRNA
2809311 2809403 - 93 29140543 t2726 - 08 Ser tRNA
2958127 2958482 - 356 29140543 t4644 - CsrB RNA
2982496 2982572 + 77 29140543 t2897 - 16 Met tRNA
2982602 2982678 + 77 29140543 t2898 - 16 Met tRNA
3045439 3045512 - 74 29140543 t2955 - 01 Gly tRNA
3070118 3070300 + 183 29140543 t4645 - 6S RNA
3118025 3118100 + 76 29140543 t3029 - 17 Phe tRNA
3221999 3222074 + 76 29140543 t3133 - 14 Ile tRNA
3257454 3257829 - 376 29140543 t4646 - M1 RNA
3299809 3299885 - 77 29140543 t3207 - 16 Met tRNA
3301770 3301856 - 87 29140543 t3209 - 15 Leu tRNA
3403433 3403552 - 120 29140543 t4656 - 5S ribosomal RNA
3403590 3403665 - 76 29140543 t3306 - 12 Thr tRNA
3403814 3403933 - 120 29140543 t4651 - 5S ribosomal RNA
3404034 3407039 - 3006 29140543 t3307 - 23S ribosomal RNA
3407225 3407300 - 76 29140543 t3308 - 02 Ala tRNA
3407412 3407488 - 77 29140543 t3309 - 14 Ile tRNA
3407559 3409092 - 1534 29140543 t3310 - 16S ribosomal RNA
3465290 3465366 - 77 29140543 t3363 - 03 Pro tRNA
3465409 3465495 - 87 29140543 t3364 - 15 Leu tRNA
3465516 3465591 - 76 29140543 t3365 - 09 His tRNA
3465646 3465722 - 77 29140543 t3366 - 11 Arg tRNA
3538178 3538253 - 76 29140543 t3450 - 20 Trp tRNA
3538262 3538338 - 77 29140543 t3451 - 06 Asp tRNA
3538391 3538510 - 120 29140543 t4652 - 5S ribosomal RNA
3538611 3541616 - 3006 29140543 t3452 - 23S ribosomal RNA
3541810 3541885 - 76 29140543 t3453 - 04 Glu tRNA
3541972 3543505 - 1534 29140543 t3454 - 16S ribosomal RNA
3576381 3576456 - 76 29140543 t3482 - 12 Thr tRNA
3576463 3576537 - 75 29140543 t3483 - 01 Gly tRNA
3576654 3576738 - 85 29140543 t3484 - 18 Tyr tRNA
3576747 3576822 - 76 29140543 t3485 - 12 Thr tRNA
3580445 3580564 - 120 29140543 t4653 - 5S ribosomal RNA
3580665 3583671 - 3007 29140543 t3490 - 23S ribosomal RNA
3583854 3583929 - 76 29140543 t3491 - 02 Ala tRNA
3584041 3584117 - 77 29140543 t3492 - 14 Ile tRNA
3584188 3585721 - 1534 29140543 t3493 - 16S ribosomal RNA
3593822 3594004 + 183 29140543 t4647 - OxyS RNA
3721814 3721923 - 110 29140543 t4648 - Spot 42 RNA
3729439 3729558 - 120 29140543 t4654 - 5S ribosomal RNA
3729659 3732664 - 3006 29140543 t3628 - 23S ribosomal RNA
3732858 3732933 - 76 29140543 t3629 - 04 Glu tRNA
3733020 3734553 - 1534 29140543 t3630 - 16S ribosomal RNA
3885953 3886043 - 91 29140543 t3768 - Sec tRNA
4007384 4007460 + 77 29140543 t3880 - 03 Pro tRNA
4242149 4243682 + 1534 29140543 t4106 - 16S ribosomal RNA
4243769 4243844 + 76 29140543 t4107 - 04 Glu tRNA
4244038 4247043 + 3006 29140543 t4108 - 23S ribosomal RNA
4247144 4247263 + 120 29140543 t4655 - 5S ribosomal RNA
4525975 4526050 - 76 29140543 t4372 - 17 Phe tRNA
4555903 4555978 + 76 29140543 t4404 - 01 Gly tRNA
4556135 4556210 + 76 29140543 t4405 - 01 Gly tRNA
4666494 4666578 + 85 29140543 t4517 - 15 Leu tRNA
4750118 4750204 - 87 29140543 t4596 - 15 Leu tRNA
4750236 4750322 - 87 29140543 t4597 - 15 Leu tRNA
4750350 4750436 - 87 29140543 t4598 - 15 Leu tRNA