Материалы:NC 006370

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   LOCUS       NC_006370            4085304 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Photobacterium profundum SS9 chromosome 1, complete sequence.
   ACCESSION   NC_006370
   VERSION     NC_006370.1  GI:54307237
   KEYWORDS    complete genome.
   SOURCE      Photobacterium profundum SS9
     ORGANISM  Photobacterium profundum SS9
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Photobacterium.
   REFERENCE   1  (bases 1 to 4085304)
     AUTHORS   Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N.,
               Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N.,
               Romualdi,C., Bartlett,D.H. and Valle,G.
     TITLE     Life at depth: Photobacterium profundum genome sequence and
               expression analysis
     JOURNAL   Science 307 (5714), 1459-1461 (2005)
      PUBMED   15746425
   REFERENCE   2  (bases 1 to 4085304)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-OCT-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3
     AUTHORS   Cestaro,A.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-MAR-2004) Cestaro A., CRIBI, Biotechnology Centre,
               University of Padova via U. Bassi 58/B, 35131 Padova, Italy
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CR354531.
               coding regions predicted by orpheus and glimmer; tRNA features
               predicted by tRNAscan SE program.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
69574	71120	+	1547	54307237	PBPRA0068	-	16S ribosomal RNA
71493	74418	+	2926	54307237	PBPRA0069	-	23S ribosomal RNA
74716	74833	+	118	54307237	PBPRA0070	-	5S ribosomal RNA
75252	76814	+	1563	54307237	PBPRA0071	-	16S ribosomal RNA
76907	76982	+	76	54307237	PBPRA0072	-	^{04 Glu tRNA}
77016	77091	+	76	54307237	PBPRA0073	-	^{10 Lys tRNA}
77159	77234	+	76	54307237	PBPRA0074	-	^{13 Val tRNA}
77601	80495	+	2895	54307237	PBPRA0075	-	23S ribosomal RNA
80793	80910	+	118	54307237	PBPRA0076	-	5S ribosomal RNA
81008	81084	+	77	54307237	PBPRA0077	-	^{06 Asp tRNA}
96967	97043	+	77	54307237	PBPRA0093	-	^{11 Arg tRNA}
97078	97153	+	76	54307237	PBPRA0094	-	^{09 His tRNA}
97220	97296	+	77	54307237	PBPRA0095	-	^{03 Pro tRNA}
97306	97381	+	76	54307237	PBPRA0096	-	^{09 His tRNA}
97433	97509	+	77	54307237	PBPRA0097	-	^{03 Pro tRNA}
103843	103919	+	77	54307237	PBPRA0102	-	^{20 Trp tRNA}
361216	362748	+	1533	54307237	PBPRA0359	-	16S ribosomal RNA
362841	362916	+	76	54307237	PBPRA0360	-	^{04 Glu tRNA}
362950	363025	+	76	54307237	PBPRA0361	-	^{10 Lys tRNA}
363092	363167	+	76	54307237	PBPRA0362	-	^{13 Val tRNA}
363497	366391	+	2895	54307237	PBPRA0363	-	23S ribosomal RNA
366542	366659	+	118	54307237	PBPRA0364	-	5S ribosomal RNA
366702	366777	+	76	54307237	PBPRA0365	-	^{12 Thr tRNA}
366782	366902	+	121	54307237	PBPR_Ar01	-	5S ribosomal RNA
443616	443691	-	76	54307237	PBPRA0429	-	^{16 Met tRNA}
520018	520102	+	85	54307237	PBPRA0491	-	^{15 Leu tRNA}
529482	531044	+	1563	54307237	PBPRA0502	-	16S ribosomal RNA
531137	531212	+	76	54307237	PBPRA0503	-	^{04 Glu tRNA}
531246	531321	+	76	54307237	PBPRA0504	-	^{10 Lys tRNA}
531388	531463	+	76	54307237	PBPRA0505	-	^{13 Val tRNA}
531807	534700	+	2894	54307237	PBPRA0506	-	23S ribosomal RNA
534902	535019	+	118	54307237	PBPRA0507	-	5S ribosomal RNA
535051	535127	+	77	54307237	PBPRA0508	-	^{06 Asp tRNA}
665339	665423	+	85	54307237	PBPRA0608	-	^{15 Leu tRNA}
665482	665558	+	77	54307237	PBPRA0609	-	^{16 Met tRNA}
779541	781117	+	1577	54307237	PBPRA0704	-	16S ribosomal RNA
781215	781290	+	76	54307237	PBPRA0705	-	^{04 Glu tRNA}
781319	781394	+	76	54307237	PBPRA0706	-	^{10 Lys tRNA}
781461	781536	+	76	54307237	PBPRA0707	-	^{13 Val tRNA}
781628	781703	+	76	54307237	PBPRA0708	-	^{02 Ala tRNA}
782045	784970	+	2926	54307237	PBPRA0709	-	23S ribosomal RNA
785220	785337	+	118	54307237	PBPRA0710	-	5S ribosomal RNA
785386	785505	+	120	54307237	PBPR_Ar02	-	5S ribosomal RNA
785537	785613	+	77	54307237	PBPRA0711	-	^{06 Asp tRNA}
966735	966810	+	76	54307237	PBPRA0875	-	^{02 Ala tRNA}
991092	991168	-	77	54307237	PBPRA0892	-	^{11 Arg tRNA}
1922427	1922502	-	76	54307237	PBPRA1673	-	^{07 Asn tRNA}
1922509	1922583	-	75	54307237	PBPRA1674	-	^{01 Gly tRNA}
1922592	1922667	-	76	54307237	PBPRA1675	-	^{12 Thr tRNA}
1922713	1922803	-	91	54307237	PBPRA1676	-	^{08 Ser tRNA}
2064941	2065020	+	80	54307237	PBPRA1795	-	^{10 Lys tRNA}
2413898	2413974	+	77	54307237	PBPRA2092	-	^{13 Val tRNA}
2414020	2414096	+	77	54307237	PBPRA2093	-	^{13 Val tRNA}
2414142	2414218	+	77	54307237	PBPRA2094	-	^{13 Val tRNA}
2414263	2414339	+	77	54307237	PBPRA2095	-	^{13 Val tRNA}
2513558	2513648	-	91	54307237	PBPRA2183	-	^{08 Ser tRNA}
2555097	2555170	-	74	54307237	PBPRA2218	-	^{19 Cys tRNA}
2555229	2555315	-	87	54307237	PBPRA2219	-	^{15 Leu tRNA}
2557486	2557573	-	88	54307237	PBPRA2221	-	^{15 Leu tRNA}
2563807	2563882	-	76	54307237	PBPRA2225	-	^{01 Gly tRNA}
2563926	2564012	-	87	54307237	PBPRA2226	-	^{15 Leu tRNA}
2564120	2564193	-	74	54307237	PBPRA2227	-	^{19 Cys tRNA}
2572575	2572650	-	76	54307237	PBPRA2232	-	^{01 Gly tRNA}
2572683	2572769	-	87	54307237	PBPRA2233	-	^{15 Leu tRNA}
2572877	2572952	-	76	54307237	PBPRA2234	-	^{01 Gly tRNA}
2572974	2573047	-	74	54307237	PBPRA2235	-	^{19 Cys tRNA}
2654740	2654830	-	91	54307237	PBPRA2305	-	^{08 Ser tRNA}
2931838	2931928	-	91	54307237	PBPRA2529	-	^{08 Ser tRNA}
2931953	2932040	-	88	54307237	PBPRA2530	-	^{08 Ser tRNA}
2953105	2953192	-	88	54307237	PBPRA2544	-	^{08 Ser tRNA}
3057691	3057767	-	77	54307237	PBPRA2640	-	^{11 Arg tRNA}
3161180	3161264	+	85	54307237	PBPRA2723	-	^{18 Tyr tRNA}
3161363	3161447	+	85	54307237	PBPRA2724	-	^{18 Tyr tRNA}
3161548	3161633	+	86	54307237	PBPRA2725	-	^{18 Tyr tRNA}
3161734	3161818	+	85	54307237	PBPRA2726	-	^{18 Tyr tRNA}
3161948	3162032	+	85	54307237	PBPRA2727	-	^{18 Tyr tRNA}
3162133	3162217	+	85	54307237	PBPRA2728	-	^{18 Tyr tRNA}
3276351	3276427	-	77	54307237	PBPRA2826	-	^{03 Pro tRNA}
3277141	3277217	-	77	54307237	PBPRA2827	-	^{03 Pro tRNA}
3277606	3277682	-	77	54307237	PBPRA2828	-	^{03 Pro tRNA}
3278062	3278138	-	77	54307237	PBPRA2829	-	^{03 Pro tRNA}
3278363	3278449	-	87	54307237	PBPRA2830	-	Xaa tRNA
3302046	3302122	+	77	54307237	PBPRA2852	-	^{16 Met tRNA}
3302171	3302255	+	85	54307237	PBPRA2853	-	^{15 Leu tRNA}
3302308	3302382	+	75	54307237	PBPRA2854	-	^{05 Gln tRNA}
3302449	3302525	+	77	54307237	PBPRA2855	-	^{16 Met tRNA}
3302574	3302658	+	85	54307237	PBPRA2856	-	^{15 Leu tRNA}
3302688	3302762	+	75	54307237	PBPRA2857	-	^{05 Gln tRNA}
3302829	3302905	+	77	54307237	PBPRA2858	-	^{16 Met tRNA}
3302954	3303038	+	85	54307237	PBPRA2859	-	^{15 Leu tRNA}
3303068	3303142	+	75	54307237	PBPRA2860	-	^{05 Gln tRNA}
3303207	3303283	+	77	54307237	PBPRA2861	-	^{16 Met tRNA}
3303329	3303413	+	85	54307237	PBPRA2862	-	^{15 Leu tRNA}
3303531	3303615	+	85	54307237	PBPRA2863	-	^{15 Leu tRNA}
3303674	3303748	+	75	54307237	PBPRA2864	-	^{05 Gln tRNA}
3303832	3303916	+	85	54307237	PBPRA2865	-	^{15 Leu tRNA}
3304046	3304130	+	85	54307237	PBPRA2866	-	^{15 Leu tRNA}
3304189	3304263	+	75	54307237	PBPRA2867	-	^{05 Gln tRNA}
3304347	3304431	+	85	54307237	PBPRA2868	-	^{15 Leu tRNA}
3304562	3304646	+	85	54307237	PBPRA2869	-	^{15 Leu tRNA}
3304705	3304779	+	75	54307237	PBPRA2870	-	^{05 Gln tRNA}
3304844	3304920	+	77	54307237	PBPRA2871	-	^{16 Met tRNA}
3304966	3305050	+	85	54307237	PBPRA2872	-	^{15 Leu tRNA}
3305168	3305252	+	85	54307237	PBPRA2873	-	^{15 Leu tRNA}
3305311	3305385	+	75	54307237	PBPRA2874	-	^{05 Gln tRNA}
3305469	3305553	+	85	54307237	PBPRA2875	-	^{15 Leu tRNA}
3356938	3357014	-	77	54307237	PBPRA2925	-	^{20 Trp tRNA}
3357051	3357127	-	77	54307237	PBPRA2926	-	^{06 Asp tRNA}
3357225	3357342	-	118	54307237	PBPRA2927	-	5S ribosomal RNA
3357537	3360445	-	2909	54307237	PBPRA2928	-	23S ribosomal RNA
3360757	3360832	-	76	54307237	PBPRA2929	-	^{02 Ala tRNA}
3360882	3360957	-	76	54307237	PBPRA2930	-	^{13 Val tRNA}
3361024	3361099	-	76	54307237	PBPRA2931	-	^{10 Lys tRNA}
3361132	3361207	-	76	54307237	PBPRA2932	-	^{04 Glu tRNA}
3361302	3362848	-	1547	54307237	PBPRA2933	-	16S ribosomal RNA
3453084	3453160	-	77	54307237	PBPRA3012	-	^{06 Asp tRNA}
3453193	3453313	-	121	54307237	PBPR_Ar03	-	5S ribosomal RNA
3453362	3453479	-	118	54307237	PBPRA3013	-	5S ribosomal RNA
3453780	3456673	-	2894	54307237	PBPRA3014	-	23S ribosomal RNA
3457017	3457092	-	76	54307237	PBPRA3015	-	^{02 Ala tRNA}
3457137	3457213	-	77	54307237	PBPRA3016	-	^{14 Ile tRNA}
3457370	3458934	-	1565	54307237	PBPRA3017	-	16S ribosomal RNA
3498958	3499034	-	77	54307237	PBPRA3053	-	^{11 Arg tRNA}
3499092	3499168	-	77	54307237	PBPRA3054	-	^{11 Arg tRNA}
3499226	3499302	-	77	54307237	PBPRA3055	-	^{11 Arg tRNA}
3499360	3499436	-	77	54307237	PBPRA3056	-	^{11 Arg tRNA}
3499494	3499570	-	77	54307237	PBPRA3057	-	^{11 Arg tRNA}
3499628	3499704	-	77	54307237	PBPRA3058	-	^{11 Arg tRNA}
3499762	3499838	-	77	54307237	PBPRA3059	-	^{11 Arg tRNA}
3500033	3500109	-	77	54307237	PBPRA3060	-	^{11 Arg tRNA}
3500200	3500291	-	92	54307237	PBPRA3061	-	^{08 Ser tRNA}
3500304	3500380	-	77	54307237	PBPRA3062	-	^{11 Arg tRNA}
3500438	3500514	-	77	54307237	PBPRA3063	-	^{11 Arg tRNA}
3500553	3500644	-	92	54307237	PBPRA3064	-	^{08 Ser tRNA}
3590422	3590497	+	76	54307237	PBPRA3157	-	^{17 Phe tRNA}
3590557	3590632	+	76	54307237	PBPRA3158	-	^{07 Asn tRNA}
3590714	3590789	+	76	54307237	PBPRA3159	-	^{12 Thr tRNA}
3590874	3590949	+	76	54307237	PBPRA3160	-	^{17 Phe tRNA}
3590957	3591032	+	76	54307237	PBPRA3161	-	^{07 Asn tRNA}
3591113	3591188	+	76	54307237	PBPRA3162	-	^{12 Thr tRNA}
3591273	3591348	+	76	54307237	PBPRA3163	-	^{17 Phe tRNA}
3591356	3591431	+	76	54307237	PBPRA3164	-	^{07 Asn tRNA}
3591478	3591553	+	76	54307237	PBPRA3165	-	^{12 Thr tRNA}
3743227	3743303	-	77	54307237	PBPRA3300	-	^{06 Asp tRNA}
3743337	3743454	-	118	54307237	PBPRA3301	-	5S ribosomal RNA
3743656	3746563	-	2908	54307237	PBPRA3302	-	23S ribosomal RNA
3746936	3748468	-	1533	54307237	PBPRA3303	-	16S ribosomal RNA
3748887	3749004	-	118	54307237	PBPRA3304	-	5S ribosomal RNA
3749206	3752100	-	2895	54307237	PBPRA3305	-	23S ribosomal RNA
3752473	3754005	-	1533	54307237	PBPRA3306	-	16S ribosomal RNA
3808584	3808660	-	77	54307237	PBPRA3357	-	^{16 Met tRNA}
3808733	3808822	-	90	54307237	PBPRA3358	-	^{01 Gly tRNA}
3808854	3808930	-	77	54307237	PBPRA3359	-	^{16 Met tRNA}
3809002	3809077	-	76	54307237	PBPRA3360	-	^{01 Gly tRNA}
3809109	3809185	-	77	54307237	PBPRA3361	-	^{16 Met tRNA}
3809257	3809332	-	76	54307237	PBPRA3362	-	^{01 Gly tRNA}
3809364	3809440	-	77	54307237	PBPRA3363	-	^{16 Met tRNA}
3809512	3809587	-	76	54307237	PBPRA3364	-	^{01 Gly tRNA}
3809619	3809695	-	77	54307237	PBPRA3365	-	^{16 Met tRNA}
3809766	3809841	-	76	54307237	PBPRA3366	-	^{01 Gly tRNA}
3809873	3809949	-	77	54307237	PBPRA3367	-	^{16 Met tRNA}
3810020	3810095	-	76	54307237	PBPRA3368	-	^{01 Gly tRNA}
3810127	3810203	-	77	54307237	PBPRA3369	-	^{16 Met tRNA}
3893932	3894008	-	77	54307237	PBPRA3440	-	^{12 Thr tRNA}
3894021	3894095	-	75	54307237	PBPRA3441	-	^{01 Gly tRNA}
3894135	3894219	-	85	54307237	PBPRA3442	-	^{18 Tyr tRNA}
3894239	3894303	-	65	54307237	PBPRA3443	-	^{12 Thr tRNA}
3903560	3903636	-	77	54307237	PBPRA3452	-	^{06 Asp tRNA}
3903739	3903856	-	118	54307237	PBPRA3453	-	5S ribosomal RNA
3904154	3907048	-	2895	54307237	PBPRA3454	-	23S ribosomal RNA
3907355	3907430	-	76	54307237	PBPRA3455	-	^{02 Ala tRNA}
3907475	3907551	-	77	54307237	PBPRA3456	-	^{14 Ile tRNA}
3907627	3909173	-	1547	54307237	PBPRA3457	-	16S ribosomal RNA
3909582	3909699	-	118	54307237	PBPRA3458	-	5S ribosomal RNA
3909999	3912891	-	2893	54307237	PBPRA3459	-	23S ribosomal RNA
3913263	3914810	-	1548	54307237	PBPRA3460	-	16S ribosomal RNA
4020697	4020814	-	118	54307237	PBPRA3555	-	5S ribosomal RNA
4020997	4023908	-	2912	54307237	PBPRA3556	-	23S ribosomal RNA
4024247	4025793	-	1547	54307237	PBPRA3557	-	16S ribosomal RNA
4026211	4026328	-	118	54307237	PBPRA3558	-	5S ribosomal RNA
4026628	4029539	-	2912	54307237	PBPRA3559	-	23S ribosomal RNA
4029867	4029942	-	76	54307237	PBPRA3560	-	^{13 Val tRNA}
4030009	4030084	-	76	54307237	PBPRA3561	-	^{10 Lys tRNA}
4030118	4030193	-	76	54307237	PBPRA3562	-	^{04 Glu tRNA}
4030288	4031836	-	1549	54307237	PBPRA3563	-	16S ribosomal RNA
4032255	4032372	-	118	54307237	PBPRA3564	-	5S ribosomal RNA
4032553	4035464	-	2912	54307237	PBPRA3565	-	23S ribosomal RNA
4035769	4035844	-	76	54307237	PBPRA3566	-	^{02 Ala tRNA}
4035889	4035965	-	77	54307237	PBPRA3567	-	^{14 Ile tRNA}
4036041	4037588	-	1548	54307237	PBPRA3568	-	16S ribosomal RNA