Материалы:NC 006840

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_006840            2906179 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Vibrio fischeri ES114 chromosome I, complete sequence.
   ACCESSION   NC_006840
   VERSION     NC_006840.1  GI:59710607
   KEYWORDS    .
   SOURCE      Vibrio fischeri ES114
     ORGANISM  Vibrio fischeri ES114
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Vibrio.
   REFERENCE   1  (bases 1 to 2906179)
     AUTHORS   Ruby,E.G., Urbanowski,M., Campbell,J., Dunn,A., Faini,M.,
               Gunsalus,R., Lostroh,P., Lupp,C., McCann,J., Millikan,D.,
               Schaefer,A., Stabb,E., Stevens,A., Visick,K., Whistler,C. and
               Greenberg,E.P.
     TITLE     Complete genome sequence of Vibrio fischeri: a symbiotic bacterium
               with pathogenic congeners
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (8), 3004-3009 (2005)
      PUBMED   15703294
   REFERENCE   2  (bases 1 to 2906179)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (14-FEB-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2906179)
     AUTHORS   Ruby,E.G., Urbanowski,M., Campbell,J.W., Dunn,A., Faini,M.A.,
               Gunsalus,R.P., Lostroh,P., Lupp,C., McCann,J.R., Millikan,D.S.,
               Schaefer,A.L., Stabb,E.V., Stevens,A.M., Visick,K.L., Whistler,C.A.
               and Greenberg,E.P.
     TITLE     Direct Submission
     JOURNAL   Submitted (16-SEP-2004) Kewalo Marine Laboratory, and W.M. Keck
               Microbial Communities and Cell Signaling Program, University of
               Hawaii, Honolulu, HI 96081, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000020.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
31800	31876	+	77	59710607	VFT0001	-	^{20 Trp tRNA}
347254	348800	+	1547	59710607	VFR0001	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
348868	348943	+	76	59710607	VFT0002	-	^{04 Glu tRNA}
349219	352109	+	2891	59710607	VFR0002	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
352203	352323	+	121	59710607	VFR0003	-	5S RNA
352727	354272	+	1546	59710607	VFR0004	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
354342	354418	+	77	59710607	VFT0003	-	^{14 Ile tRNA}
354456	354531	+	76	59710607	VFT0004	-	^{02 Ala tRNA}
354805	357695	+	2891	59710607	VFR0005	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
357784	357904	+	121	59710607	VFR0006	-	5S RNA
357934	358010	+	77	59710607	VFT0005	-	^{06 Asp tRNA}
447875	447959	+	85	59710607	VFT0006	-	^{15 Leu tRNA}
448881	448956	-	76	59710607	VFT0007	-	^{07 Asn tRNA}
448963	449038	-	76	59710607	VFT0008	-	^{17 Phe tRNA}
449046	449121	-	76	59710607	VFT0009	-	^{12 Thr tRNA}
449195	449270	-	76	59710607	VFT0010	-	^{07 Asn tRNA}
449304	449379	-	76	59710607	VFT0011	-	^{12 Thr tRNA}
449421	449496	-	76	59710607	VFT0012	-	^{07 Asn tRNA}
449503	449578	-	76	59710607	VFT0013	-	^{17 Phe tRNA}
449586	449661	-	76	59710607	VFT0014	-	^{12 Thr tRNA}
449737	449812	-	76	59710607	VFT0015	-	^{17 Phe tRNA}
519278	519362	+	85	59710607	VFT0016	-	^{15 Leu tRNA}
583353	583444	+	92	59710607	VFT0017	-	^{08 Ser tRNA}
583498	583574	+	77	59710607	VFT0018	-	^{11 Arg tRNA}
583614	583705	+	92	59710607	VFT0019	-	^{08 Ser tRNA}
583756	583832	+	77	59710607	VFT0020	-	^{11 Arg tRNA}
583900	583976	+	77	59710607	VFT0021	-	^{11 Arg tRNA}
584044	584120	+	77	59710607	VFT0022	-	^{11 Arg tRNA}
584188	584264	+	77	59710607	VFT0023	-	^{11 Arg tRNA}
584811	584887	+	77	59710607	VFT0024	-	^{11 Arg tRNA}
584952	585028	+	77	59710607	VFT0025	-	^{11 Arg tRNA}
617478	619023	+	1546	59710607	VFR0007	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
619384	622274	+	2891	59710607	VFR0008	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
622367	622487	+	121	59710607	VFR0009	-	5S RNA
622567	622643	+	77	59710607	VFT0026	-	^{06 Asp tRNA}
622680	622756	+	77	59710607	VFT0027	-	^{20 Trp tRNA}
830929	831003	-	75	59710607	VFT0028	-	^{05 Gln tRNA}
831029	831113	-	85	59710607	VFT0029	-	^{15 Leu tRNA}
831199	831275	-	77	59710607	VFT0030	-	^{16 Met tRNA}
831286	831370	-	85	59710607	VFT0031	-	^{15 Leu tRNA}
831451	831525	-	75	59710607	VFT0032	-	^{05 Gln tRNA}
831555	831631	-	77	59710607	VFT0033	-	^{16 Met tRNA}
831642	831726	-	85	59710607	VFT0034	-	^{15 Leu tRNA}
831807	831881	-	75	59710607	VFT0035	-	^{05 Gln tRNA}
831907	831991	-	85	59710607	VFT0036	-	^{15 Leu tRNA}
832072	832146	-	75	59710607	VFT0037	-	^{05 Gln tRNA}
832172	832256	-	85	59710607	VFT0038	-	^{15 Leu tRNA}
832337	832411	-	75	59710607	VFT0039	-	^{05 Gln tRNA}
832437	832521	-	85	59710607	VFT0040	-	^{15 Leu tRNA}
832600	832676	-	77	59710607	VFT0041	-	^{16 Met tRNA}
852745	852821	+	77	59710607	VFT0042	-	^{03 Pro tRNA}
1030930	1031005	-	76	59710607	VFT0043	-	^{07 Asn tRNA}
1031065	1031140	-	76	59710607	VFT0044	-	^{07 Asn tRNA}
1061957	1062044	+	88	59710607	VFT0045	-	^{08 Ser tRNA}
1389613	1389689	+	77	59710607	VFT0046	-	^{13 Val tRNA}
1389767	1389843	+	77	59710607	VFT0047	-	^{13 Val tRNA}
1758426	1758512	-	87	59710607	VFT0048	-	^{15 Leu tRNA}
1758590	1758665	-	76	59710607	VFT0049	-	^{01 Gly tRNA}
1758680	1758753	-	74	59710607	VFT0050	-	^{19 Cys tRNA}
1758794	1758880	-	87	59710607	VFT0051	-	^{15 Leu tRNA}
1758993	1759068	-	76	59710607	VFT0052	-	^{01 Gly tRNA}
1759082	1759155	-	74	59710607	VFT0053	-	^{19 Cys tRNA}
1775883	1775966	+	84	59710607	VFT0054	-	^{18 Tyr tRNA}
1776049	1776132	+	84	59710607	VFT0055	-	^{18 Tyr tRNA}
1776215	1776298	+	84	59710607	VFT0056	-	^{18 Tyr tRNA}
1776381	1776464	+	84	59710607	VFT0057	-	^{18 Tyr tRNA}
1776547	1776630	+	84	59710607	VFT0058	-	^{18 Tyr tRNA}
1827827	1827902	-	76	59710607	VFT0059	-	^{01 Gly tRNA}
1827936	1828022	-	87	59710607	VFT0060	-	^{15 Leu tRNA}
1828100	1828175	-	76	59710607	VFT0061	-	^{01 Gly tRNA}
1828195	1828269	-	75	59710607	VFT0062	-	^{19 Cys tRNA}
1862531	1862621	+	91	59710607	VFT0063	-	^{08 Ser tRNA}
1862660	1862736	+	77	59710607	VFT0064	-	^{06 Asp tRNA}
1863827	1863917	+	91	59710607	VFT0065	-	^{08 Ser tRNA}
1864254	1864344	+	91	59710607	VFT0066	-	^{08 Ser tRNA}
1999181	1999257	-	77	59710607	VFT0067	-	^{11 Arg tRNA}
2374361	2374437	-	77	59710607	VFT0068	-	^{06 Asp tRNA}
2374467	2374587	-	121	59710607	VFR0010	-	5S RNA
2374676	2377566	-	2891	59710607	VFR0011	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2377915	2377990	-	76	59710607	VFT0069	-	^{04 Glu tRNA}
2378059	2379602	-	1544	59710607	VFR0012	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2426708	2426784	-	77	59710607	VFT0070	-	^{06 Asp tRNA}
2426814	2426934	-	121	59710607	VFR0013	-	5S RNA
2427023	2429913	-	2891	59710607	VFR0014	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2430291	2430366	-	76	59710607	VFT0071	-	^{02 Ala tRNA}
2430404	2430480	-	77	59710607	VFT0072	-	^{14 Ile tRNA}
2430551	2432094	-	1544	59710607	VFR0015	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2434498	2434573	-	76	59710607	VFT0073	-	^{07 Asn tRNA}
2434603	2434678	-	76	59710607	VFT0074	-	^{12 Thr tRNA}
2434731	2434806	-	76	59710607	VFT0075	-	^{17 Phe tRNA}
2537274	2537349	+	76	59710607	VFT0076	-	^{16 Met tRNA}
2624710	2624785	-	76	59710607	VFT0077	-	^{01 Gly tRNA}
2624818	2624894	-	77	59710607	VFT0078	-	^{16 Met tRNA}
2624955	2625031	-	77	59710607	VFT0079	-	^{01 Gly tRNA}
2625064	2625140	-	77	59710607	VFT0080	-	^{16 Met tRNA}
2625201	2625276	-	76	59710607	VFT0081	-	^{01 Gly tRNA}
2625309	2625385	-	77	59710607	VFT0082	-	^{16 Met tRNA}
2625457	2625532	-	76	59710607	VFT0083	-	^{01 Gly tRNA}
2716690	2716765	-	76	59710607	VFT0084	-	^{12 Thr tRNA}
2716778	2716852	-	75	59710607	VFT0085	-	^{01 Gly tRNA}
2716888	2716971	-	84	59710607	VFT0086	-	^{18 Tyr tRNA}
2717005	2717080	-	76	59710607	VFT0087	-	^{12 Thr tRNA}
2722606	2722682	-	77	59710607	VFT0088	-	^{06 Asp tRNA}
2722712	2722832	-	121	59710607	VFR0016	-	5S RNA
2722926	2725816	-	2891	59710607	VFR0017	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2726098	2726173	-	76	59710607	VFT0089	-	^{13 Val tRNA}
2726205	2726280	-	76	59710607	VFT0090	-	^{02 Ala tRNA}
2726305	2726380	-	76	59710607	VFT0091	-	^{10 Lys tRNA}
2726383	2726458	-	76	59710607	VFT0092	-	^{04 Glu tRNA}
2726555	2728097	-	1543	59710607	VFR0018	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2728501	2728621	-	121	59710607	VFR0019	-	5S RNA
2728711	2731601	-	2891	59710607	VFR0020	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2731869	2731944	-	76	59710607	VFT0093	-	^{02 Ala tRNA}
2731982	2732058	-	77	59710607	VFT0094	-	^{14 Ile tRNA}
2732129	2733672	-	1544	59710607	VFR0021	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2734077	2734197	-	121	59710607	VFR0022	-	5S RNA
2734291	2737181	-	2891	59710607	VFR0023	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2737466	2737541	-	76	59710607	VFT0095	-	^{02 Ala tRNA}
2737610	2739153	-	1544	59710607	VFR0024	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2834860	2834936	-	77	59710607	VFT0096	-	^{03 Pro tRNA}
2835009	2835084	-	76	59710607	VFT0097	-	^{09 His tRNA}
2835126	2835202	-	77	59710607	VFT0098	-	^{03 Pro tRNA}
2835275	2835350	-	76	59710607	VFT0099	-	^{09 His tRNA}
2835386	2835462	-	77	59710607	VFT0100	-	^{11 Arg tRNA}
2847344	2847462	-	119	59710607	VFR0025	-	5S RNA
2847478	2847554	-	77	59710607	VFT0101	-	^{12 Thr tRNA}
2847616	2847736	-	121	59710607	VFR0026	-	5S RNA
2847825	2850715	-	2891	59710607	VFR0027	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2850983	2851058	-	76	59710607	VFT0102	-	^{13 Val tRNA}
2851090	2851165	-	76	59710607	VFT0103	-	^{10 Lys tRNA}
2851168	2851243	-	76	59710607	VFT0104	-	^{04 Glu tRNA}
2851340	2852883	-	1544	59710607	VFR0028	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2853287	2853407	-	121	59710607	VFR0029	-	5S RNA
2853497	2856388	-	2892	59710607	VFR0030	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2856656	2856731	-	76	59710607	VFT0105	-	^{13 Val tRNA}
2856763	2856838	-	76	59710607	VFT0106	-	^{10 Lys tRNA}
2856841	2856916	-	76	59710607	VFT0107	-	^{04 Glu tRNA}
2857013	2858556	-	1544	59710607	VFR0031	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA
2858960	2859080	-	121	59710607	VFR0032	-	5S RNA
2859169	2862059	-	2891	59710607	VFR0033	-	large subunit ribosomal RNA; lsuRNA; 23S ribosomal RNA
2862385	2863928	-	1544	59710607	VFR0034	-	small subunit ribosomal RNA; ssuRNA; 16S ribosomal RNA