Материалы:NC 007481

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   LOCUS       NC_007481            3214944 bp    DNA     circular BCT 20-JAN-2006
   DEFINITION  Pseudoalteromonas haloplanktis TAC125 chromosome I, complete
               sequence.
   ACCESSION   NC_007481
   VERSION     NC_007481.1  GI:77358982
   KEYWORDS    .
   SOURCE      Pseudoalteromonas haloplanktis TAC125
     ORGANISM  Pseudoalteromonas haloplanktis TAC125
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Pseudoalteromonadaceae; Pseudoalteromonas.
   REFERENCE   1  (bases 1 to 3214944)
     AUTHORS   Medigue,C., Krin,E., Pascal,G., Barbe,V., Bernsel,A., Bertin,P.N.,
               Cheung,F., Cruveiller,S., D'Amico,S., Duilio,A., Fang,G.,
               Feller,G., Ho,C., Mangenot,S., Marino,G., Nilsson,J., Parrilli,E.,
               Rocha,E.P., Rouy,Z., Sekowska,A., Tutino,M.L., Vallenet,D., von
               Heijne,G. and Danchin,A.
     TITLE     Coping with cold: The genome of the versatile marine Antarctica
               bacterium Pseudoalteromonas haloplanktis TAC125
     JOURNAL   (er) Genome Res. 15 (10), 1325-1335 (2005) In press
      PUBMED   16169927
     REMARK    1. Genoscope, CNRS-UMR 8030, Atelier de Genomique Comparative, 2,
               rue Gaston Cremieux, 91006 Evry Cedex, France 2. Genetics of
               Bacterial Genomes, Institut Pasteur, 28 rue du Docteur Roux, 75724
               Paris Cedex 15, France 3. Dept of Biochemistry & Biophysics,
               Stockholm University, S-106 91 Stockholm, Sweden 4. Dynamique,
               Evolution et Expression de Genomes de Micro-organismes, Universite
               Louis Pasteur, 28, rue Goethe, 67000 Strasbourg, France 5.
               Laboratoire de Biochimie, Institut de Chimie B6, Universite de
               Liege, B-4000 Liege-Sart Tilman, Belgium 6. Dipartimento di Chimica
               Organica e Biochimica, edificio MB, via Cinthia, Complesso
               Universitario Monte S. Angelo, 80126 Napoli, Italy 7. CEA Saclay,
               Laboratoire Stress Oxydants et Cancer, DSV/DBJC/SBMS, Bat 142,
               91191 Gif sur Yvette Cedex, France
   REFERENCE   2  (bases 1 to 3214944)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3214944)
     AUTHORS   Genoscope.
     CONSRTM   Institut Pasteur and Genoscope
     TITLE     Direct Submission
     JOURNAL   Submitted (26-APR-2005) Genoscope, Centre National de Sequencage,
               BP 191, Evry cedex 91006, France
     REMARK    This sequence was made in collaboration between the laboratory
               Institut Pasteur (France) and Genoscope (France).
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CR954246.
               Annotation data relative to COG assignations, enzymatic function
               prediction (PRIAM software), TMHMM and SignalP predictions, and
               synteny results (Syntonizer software) are available in Psychroscope
               database via MaGe annotation system
               http://www.genoscope.cns.fr/agc/mage/psychroscope. Each annotation
               includes a confidence level as follow: 1 : Function experimentally
               demonstrated in the studied organism 2a : Function of homologous
               gene experimentally demonstrated in an other organism
               2b : Function of strongly homologous gene
               3 : Function proposed based on presence of conserved amino acid
               motif, structural feature or limited homology
               4 : Homologs of previously reported genes of unknown function 5 :
               No homology to any previously reported sequences 6 : Doubtful CDS
               7 : Gene remnant.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
35140	36667	+	1528	77358982	PSHAa_rRNA16s6	-	16S ribosomal RNA
36745	36821	+	77	77358982	PSHAatRNA1	-	^{14 Ile tRNA}
36933	37008	+	76	77358982	PSHAatRNA2	-	^{02 Ala tRNA}
37315	40203	+	2889	77358982	PSHAa_rRNA23s6	-	23s
40347	40463	+	117	77358982	PSHAa_rRNA5s7	-	5S ribosomal RNA
59328	59420	-	93	77358982	PSHAatRNA106	-	^{08 Ser tRNA}
59478	59568	-	91	77358982	PSHAatRNA105	-	^{08 Ser tRNA}
124066	125593	+	1528	77358982	PSHAa_rRNA16s7	-	16s ribsomal RNA
125895	128784	+	2890	77358982	PSHAa_rRNA23s7	-	23s
128928	129044	+	117	77358982	PSHAa_rRNA5s8	-	5S ribosomal RNA
137523	137599	+	77	77358982	PSHAatRNA3	-	^{16 Met tRNA}
137795	137871	+	77	77358982	PSHAatRNA4	-	^{16 Met tRNA}
138045	138121	+	77	77358982	PSHAatRNA5	-	^{16 Met tRNA}
224316	224392	+	77	77358982	PSHAatRNA6	-	^{20 Trp tRNA}
265958	267485	+	1528	77358982	PSHAa_rRNA16s8	-	16s ribsomal RNA
267563	267639	+	77	77358982	PSHAatRNA7	-	^{14 Ile tRNA}
267751	267826	+	76	77358982	PSHAatRNA8	-	^{02 Ala tRNA}
268133	271021	+	2889	77358982	PSHAa_rRNA23s8	-	23s
271165	271281	+	117	77358982	PSHAa_rRNA5s9	-	5S ribosomal RNA
296689	296764	-	76	77358982	PSHAatRNA104	-	^{02 Ala tRNA}
342483	342559	+	77	77358982	PSHAatRNA9	-	^{16 Met tRNA}
414242	414317	-	76	77358982	PSHAatRNA103	-	^{09 His tRNA}
506639	506714	+	76	77358982	PSHAatRNA10	-	^{01 Gly tRNA}
506920	506995	+	76	77358982	PSHAatRNA11	-	^{01 Gly tRNA}
507112	507187	+	76	77358982	PSHAatRNA12	-	^{01 Gly tRNA}
509920	511447	+	1528	77358982	PSHAa_rRNA16s9	-	16S ribosomal RNA
511749	514637	+	2889	77358982	PSHAa_rRNA23s9	-	23S ribosomal RNA
514781	514897	+	117	77358982	PSHAa_rRNA5s10	-	5S ribosomal RNA
534723	534815	+	93	77358982	PSHAatRNA13	-	^{08 Ser tRNA}
534851	534927	+	77	77358982	PSHAatRNA14	-	^{11 Arg tRNA}
535030	535106	+	77	77358982	PSHAatRNA15	-	^{11 Arg tRNA}
535254	535330	+	77	77358982	PSHAatRNA16	-	^{11 Arg tRNA}
535445	535521	+	77	77358982	PSHAatRNA17	-	^{11 Arg tRNA}
574291	574366	+	76	77358982	PSHAatRNA18	-	^{17 Phe tRNA}
574439	574514	+	76	77358982	PSHAatRNA19	-	^{12 Thr tRNA}
574659	574734	+	76	77358982	PSHAatRNA20	-	^{17 Phe tRNA}
574794	574869	+	76	77358982	PSHAatRNA21	-	^{12 Thr tRNA}
575168	575243	+	76	77358982	PSHAatRNA22	-	^{17 Phe tRNA}
676584	676660	+	77	77358982	PSHAatRNA23	-	^{20 Trp tRNA}
790914	790988	+	75	77358982	PSHAatRNA24	-	^{11 Arg tRNA}
901280	901364	+	85	77358982	PSHAatRNA25	-	^{15 Leu tRNA}
1030586	1030662	+	77	77358982	PSHAatRNA26	-	^{16 Met tRNA}
1087155	1087229	-	75	77358982	PSHAatRNA102	-	^{05 Gln tRNA}
1087269	1087353	-	85	77358982	PSHAatRNA101	-	^{15 Leu tRNA}
1087424	1087498	-	75	77358982	PSHAatRNA100	-	^{05 Gln tRNA}
1087537	1087621	-	85	77358982	PSHAatRNA99	-	^{15 Leu tRNA}
1087706	1087780	-	75	77358982	PSHAatRNA98	-	^{05 Gln tRNA}
1087819	1087903	-	85	77358982	PSHAatRNA97	-	^{15 Leu tRNA}
1087996	1088072	-	77	77358982	PSHAatRNA96	-	^{16 Met tRNA}
1088078	1088152	-	75	77358982	PSHAatRNA95	-	^{05 Gln tRNA}
1088189	1088273	-	85	77358982	PSHAatRNA94	-	^{15 Leu tRNA}
1088339	1088415	-	77	77358982	PSHAatRNA93	-	^{16 Met tRNA}
1127656	1127731	-	76	77358982	PSHAatRNA92	-	^{13 Val tRNA}
1127788	1127863	-	76	77358982	PSHAatRNA91	-	^{13 Val tRNA}
1128013	1128088	-	76	77358982	PSHAatRNA90	-	^{13 Val tRNA}
1128247	1128322	-	76	77358982	PSHAatRNA89	-	^{13 Val tRNA}
1128474	1128549	-	76	77358982	PSHAatRNA88	-	^{13 Val tRNA}
1128706	1128781	-	76	77358982	PSHAatRNA87	-	^{13 Val tRNA}
1128932	1129007	-	76	77358982	PSHAatRNA86	-	^{13 Val tRNA}
1129743	1129818	+	76	77358982	PSHAatRNA27	-	^{02 Ala tRNA}
1129856	1129931	+	76	77358982	PSHAatRNA28	-	^{04 Glu tRNA}
1130076	1130151	+	76	77358982	PSHAatRNA29	-	^{04 Glu tRNA}
1130326	1130401	+	76	77358982	PSHAatRNA30	-	^{04 Glu tRNA}
1130491	1130566	+	76	77358982	PSHAatRNA31	-	^{04 Glu tRNA}
1130656	1130731	+	76	77358982	PSHAatRNA32	-	^{04 Glu tRNA}
1130821	1130896	+	76	77358982	PSHAatRNA33	-	^{04 Glu tRNA}
1131075	1131150	+	76	77358982	PSHAatRNA34	-	^{04 Glu tRNA}
1153663	1153739	-	77	77358982	PSHAatRNA85	-	^{07 Asn tRNA}
1153765	1153841	-	77	77358982	PSHAatRNA84	-	^{07 Asn tRNA}
1153864	1153940	-	77	77358982	PSHAatRNA83	-	^{07 Asn tRNA}
1153962	1154038	-	77	77358982	PSHAatRNA82	-	^{07 Asn tRNA}
1199960	1200044	-	85	77358982	PSHAatRNA81	-	^{18 Tyr tRNA}
1200094	1200178	-	85	77358982	PSHAatRNA80	-	^{18 Tyr tRNA}
1484222	1484312	+	91	77358982	PSHAatRNA35	-	^{08 Ser tRNA}
1761799	1761889	-	91	77358982	PSHAatRNA79	-	^{08 Ser tRNA}
1761991	1762081	-	91	77358982	PSHAatRNA78	-	^{08 Ser tRNA}
1817986	1818062	+	77	77358982	PSHAatRNA36	-	^{13 Val tRNA}
1818114	1818190	+	77	77358982	PSHAatRNA37	-	^{13 Val tRNA}
1968865	1968954	-	90	77358982	PSHAatRNA77	-	^{08 Ser tRNA}
1970344	1970419	-	76	77358982	PSHAatRNA76	-	^{10 Lys tRNA}
1970504	1970579	-	76	77358982	PSHAatRNA75	-	^{10 Lys tRNA}
1970651	1970726	-	76	77358982	PSHAatRNA74	-	^{10 Lys tRNA}
1970812	1970887	-	76	77358982	PSHAatRNA73	-	^{10 Lys tRNA}
1970957	1971032	-	76	77358982	PSHAatRNA72	-	^{10 Lys tRNA}
1971118	1971193	-	76	77358982	PSHAatRNA71	-	^{10 Lys tRNA}
1971263	1971338	-	76	77358982	PSHAatRNA70	-	^{10 Lys tRNA}
1971417	1971492	-	76	77358982	PSHAatRNA69	-	^{10 Lys tRNA}
1983712	1983788	+	77	77358982	PSHAatRNA38	-	^{03 Pro tRNA}
2014134	2014250	-	117	77358982	PSHAa_rRNA5s6	-	5S ribosomal RNA
2014394	2017282	-	2889	77358982	PSHAa_rRNA23s5	-	23S ribosomal RNA
2017583	2019110	-	1528	77358982	PSHAa_rRNA16s5	-	16S ribosomal RNA
2021825	2021911	-	87	77358982	PSHAatRNA68	-	^{15 Leu tRNA}
2021950	2022023	-	74	77358982	PSHAatRNA67	-	^{19 Cys tRNA}
2022043	2022118	-	76	77358982	PSHAatRNA66	-	^{01 Gly tRNA}
2022194	2022280	-	87	77358982	PSHAatRNA65	-	^{15 Leu tRNA}
2022320	2022395	-	76	77358982	PSHAatRNA64	-	^{01 Gly tRNA}
2022460	2022546	-	87	77358982	PSHAatRNA63	-	^{15 Leu tRNA}
2022584	2022657	-	74	77358982	PSHAatRNA62	-	^{19 Cys tRNA}
2022675	2022750	-	76	77358982	PSHAatRNA61	-	^{01 Gly tRNA}
2064272	2064348	-	77	77358982	PSHAatRNA60	-	^{06 Asp tRNA}
2064403	2064479	-	77	77358982	PSHAatRNA59	-	^{06 Asp tRNA}
2064527	2064603	-	77	77358982	PSHAatRNA58	-	^{06 Asp tRNA}
2064642	2064718	-	77	77358982	PSHAatRNA57	-	^{06 Asp tRNA}
2064752	2064828	-	77	77358982	PSHAatRNA56	-	^{06 Asp tRNA}
2064870	2064946	-	77	77358982	PSHAatRNA55	-	^{06 Asp tRNA}
2064973	2065049	-	77	77358982	PSHAatRNA54	-	^{06 Asp tRNA}
2065845	2065921	-	77	77358982	PSHAatRNA53	-	^{06 Asp tRNA}
2065955	2066031	-	77	77358982	PSHAatRNA52	-	^{06 Asp tRNA}
2066073	2066149	-	77	77358982	PSHAatRNA51	-	^{06 Asp tRNA}
2066176	2066252	-	77	77358982	PSHAatRNA50	-	^{06 Asp tRNA}
2183379	2183455	-	77	77358982	PSHAatRNA49	-	^{03 Pro tRNA}
2183520	2183596	-	77	77358982	PSHAatRNA48	-	^{03 Pro tRNA}
2183612	2183687	-	76	77358982	PSHAatRNA47	-	^{09 His tRNA}
2183711	2183787	-	77	77358982	PSHAatRNA46	-	^{11 Arg tRNA}
2183904	2183980	-	77	77358982	PSHAatRNA45	-	^{03 Pro tRNA}
2480362	2480477	-	116	77358982	PSHAa_rRNA5s5	-	5S ribosomal RNA
2480542	2480658	-	117	77358982	PSHAa_rRNA5s4	-	5S ribosomal RNA
2480802	2483690	-	2889	77358982	PSHAa_rRNA23s4	-	23s
2483991	2485518	-	1528	77358982	PSHAa_rRNA16s4	-	16S ribosomal RNA
2569720	2569804	-	85	77358982	PSHAatRNA44	-	^{15 Leu tRNA}
2581718	2581792	-	75	77358982	PSHAatRNA43	-	^{11 Arg tRNA}
2959882	2959998	-	117	77358982	PSHAa_rRNA5s3	-	5S ribosomal RNA
2960142	2963030	-	2889	77358982	PSHAa_rRNA23s3	-	23s
2963333	2964860	-	1528	77358982	PSHAa_rRNA16s3	-	16S ribosomal RNA
2978832	2978948	-	117	77358982	PSHAa_rRNA5s2	-	5S ribosomal RNA
2979092	2981980	-	2889	77358982	PSHAa_rRNA23s2	-	23S ribosomal RNA
2982280	2983807	-	1528	77358982	PSHAa_rRNA16s2	-	16S ribosomal RNA
3080703	3080778	-	76	77358982	PSHAatRNA42	-	^{12 Thr tRNA}
3080791	3080865	-	75	77358982	PSHAatRNA41	-	^{01 Gly tRNA}
3080911	3080995	-	85	77358982	PSHAatRNA40	-	^{18 Tyr tRNA}
3081037	3081112	-	76	77358982	PSHAatRNA39	-	^{12 Thr tRNA}
3189804	3189920	-	117	77358982	PSHAa_rRNA5s1	-	5S ribosomal RNA
3190064	3192952	-	2889	77358982	PSHAa_rRNA23s1	-	23S ribosomal RNA
3193253	3194780	-	1528	77358982	PSHAa_rRNA16s1	-	16S ribosomal RNA