Материалы:NC 007484

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   LOCUS       NC_007484            3481691 bp    DNA     circular BCT 16-AUG-2007
   DEFINITION  Nitrosococcus oceani ATCC 19707, complete genome.
   ACCESSION   NC_007484
   VERSION     NC_007484.1  GI:77163561
   KEYWORDS    .
   SOURCE      Nitrosococcus oceani ATCC 19707
     ORGANISM  Nitrosococcus oceani ATCC 19707
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Chromatiaceae; Nitrosococcus.
   REFERENCE   1  (bases 1 to 3481691)
     AUTHORS   Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J.,
               Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M.,
               Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B.
     TITLE     Complete genome sequence of the marine, chemolithoautotrophic,
               ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707
     JOURNAL   Appl. Environ. Microbiol. 72 (9), 6299-6315 (2006)
      PUBMED   16957257
   REFERENCE   2  (bases 1 to 3481691)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3481691)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000127.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Dan Arp (arpd@bcc.orst.edu)
               Bacteria available from ATCC: ATCC 19707
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
45036 45111 + 76 77163561 Noc_R0001 - 16 Met tRNA
159954 160029 + 76 77163561 Noc_R0002 - 10 Lys tRNA
208097 208171 + 75 77163561 Noc_R0003 - 12 Thr tRNA
216418 216494 + 77 77163561 Noc_R0004 - 11 Arg tRNA
555188 555262 + 75 77163561 Noc_R0005 - 05 Gln tRNA
558871 558947 + 77 77163561 Noc_R0006 - 16 Met tRNA
595004 595095 - 92 77163561 Noc_R0007 - 08 Ser tRNA
958482 958558 - 77 77163561 Noc_R0008 - 11 Arg tRNA
964957 965031 - 75 77163561 Noc_R0009 - 04 Glu tRNA
999383 1000873 + 1491 77163561 Noc_R0010 - 16S ribosomal RNA
1001173 1001249 + 77 77163561 Noc_R0011 - 14 Ile tRNA
1001312 1001387 + 76 77163561 Noc_R0012 - 02 Ala tRNA
1001588 1004500 + 2913 77163561 Noc_R0013 - 23S ribosomal RNA
1004558 1004672 + 115 77163561 Noc_R0014 - 5S ribosomal RNA
1025673 1025765 + 93 77163561 Noc_R0015 - 08 Ser tRNA
1244577 1244652 - 76 77163561 Noc_R0016 - 07 Asn tRNA
1248128 1248204 + 77 77163561 Noc_R0017 - 13 Val tRNA
1255607 1255683 + 77 77163561 Noc_R0018 - 03 Pro tRNA
1261574 1261647 + 74 77163561 Noc_R0019 - 01 Gly tRNA
1307217 1307577 + 361 77163561 Noc_R0020 - tmRNA
1837239 1837312 - 74 77163561 Noc_R0021 - 19 Cys tRNA
1837367 1837442 - 76 77163561 Noc_R0022 - 01 Gly tRNA
1840493 1840579 - 87 77163561 Noc_R0023 - 15 Leu tRNA
1849376 1849465 + 90 77163561 Noc_R0024 - 08 Ser tRNA
1871585 1871670 - 86 77163561 Noc_R0025 - 15 Leu tRNA
1879904 1880018 - 115 77163561 Noc_R0026 - 5S ribosomal RNA
1880076 1882988 - 2913 77163561 Noc_R0027 - 23S ribosomal RNA
1883213 1884703 - 1491 77163561 Noc_R0028 - 16S ribosomal RNA
1931655 1931730 + 76 77163561 Noc_R0029 - 02 Ala tRNA
1931781 1931857 + 77 77163561 Noc_R0030 - 04 Glu tRNA
1997133 1997209 - 77 77163561 Noc_R0031 - 06 Asp tRNA
1997233 1997308 - 76 77163561 Noc_R0032 - 13 Val tRNA
2170474 2170549 - 76 77163561 Noc_R0033 - 12 Thr tRNA
2305013 2305089 - 77 77163561 Noc_R0034 - 11 Arg tRNA
2445514 2445590 - 77 77163561 Noc_R0035 - 16 Met tRNA
2586512 2586583 - 72 77163561 Noc_R0036 - 08 Ser tRNA
2593020 2593095 - 76 77163561 Noc_R0037 - 10 Lys tRNA
2593177 2593252 - 76 77163561 Noc_R0038 - 09 His tRNA
2595836 2595912 - 77 77163561 Noc_R0039 - 11 Arg tRNA
2595971 2596047 - 77 77163561 Noc_R0040 - 03 Pro tRNA
2681660 2681735 - 76 77163561 Noc_R0041 - 20 Trp tRNA
2683129 2683204 - 76 77163561 Noc_R0042 - 12 Thr tRNA
2683252 2683325 - 74 77163561 Noc_R0043 - 01 Gly tRNA
2683394 2683478 - 85 77163561 Noc_R0044 - 18 Tyr tRNA
2779995 2780069 + 75 77163561 Noc_R0045 - 13 Val tRNA
2916824 2916908 - 85 77163561 Noc_R0046 - 15 Leu tRNA
2947145 2947235 + 91 77163561 Noc_R0047 - 08 Ser tRNA
2947867 2947984 + 118 77163561 Noc_R0048 - SRP RNA; RNA component of signal recognition
3041560 3041635 + 76 77163561 Noc_R0049 - 02 Ala tRNA
3213890 3213963 + 74 77163561 Noc_R0050 - 05 Gln tRNA
3251301 3251597 - 297 77163561 Noc_R0051 - RNA component of RNaseP
3277718 3277804 + 87 77163561 Noc_R0052 - 15 Leu tRNA
3306888 3306963 + 76 77163561 Noc_R0053 - 17 Phe tRNA
3429057 3429133 - 77 77163561 Noc_R0054 - 03 Pro tRNA