Материалы:NC 007954

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007954            4545906 bp    DNA     circular BCT 13-APR-2006
   DEFINITION  Shewanella denitrificans OS217, complete genome.
   ACCESSION   NC_007954
   VERSION     NC_007954.1  GI:91791369
   KEYWORDS    .
   SOURCE      Shewanella denitrificans OS217
     ORGANISM  Shewanella denitrificans OS217
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4545906)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella denitrificans OS217
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4545906)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4545906)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000302.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634607
               Source DNA available from Jim Fredrickson (jim.fredrickson@pnl.gov)
               Bacteria available from DSMZ: DSM 15013
               Contacts: Jim Fredrickson (jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42596	44130	+	1535	91791369	Sden_R0001	-	16S ribosomal RNA
44667	47571	+	2905	91791369	Sden_R0002	-	23S ribosomal RNA
47825	47940	+	116	91791369	Sden_R0003	-	5S ribosomal RNA
178816	178891	+	76	91791369	Sden_R0004	-	^{12 Thr tRNA}
178901	178985	+	85	91791369	Sden_R0005	-	^{18 Tyr tRNA}
179022	179095	+	74	91791369	Sden_R0006	-	^{01 Gly tRNA}
260843	262377	+	1535	91791369	Sden_R0007	-	16S ribosomal RNA
262528	262604	+	77	91791369	Sden_R0008	-	^{14 Ile tRNA}
262736	262811	+	76	91791369	Sden_R0009	-	^{02 Ala tRNA}
263308	266212	+	2905	91791369	Sden_R0010	-	23S ribosomal RNA
266395	266510	+	116	91791369	Sden_R0011	-	5S ribosomal RNA
266570	266645	+	76	91791369	Sden_R0012	-	^{12 Thr tRNA}
266682	266797	+	116	91791369	Sden_R0013	-	5S ribosomal RNA
312089	312419	+	331	91791369	Sden_R0014	-	RNA component of RNaseP
408546	410080	+	1535	91791369	Sden_R0015	-	16S ribosomal RNA
410634	413538	+	2905	91791369	Sden_R0016	-	23S ribosomal RNA
413748	413863	+	116	91791369	Sden_R0017	-	5S ribosomal RNA
413953	414029	+	77	91791369	Sden_R0018	-	^{06 Asp tRNA}
476436	476512	+	77	91791369	Sden_R0019	-	^{11 Arg tRNA}
476585	476660	+	76	91791369	Sden_R0020	-	^{09 His tRNA}
476790	476866	+	77	91791369	Sden_R0021	-	^{03 Pro tRNA}
477020	477096	+	77	91791369	Sden_R0022	-	^{03 Pro tRNA}
619708	619792	+	85	91791369	Sden_R0023	-	^{15 Leu tRNA}
784720	784884	-	165	91791369	Sden_R0024	-
842778	842933	+	156	91791369	Sden_R0025	-
939527	939603	+	77	91791369	Sden_R0026	-	^{16 Met tRNA}
939758	939842	+	85	91791369	Sden_R0027	-	^{15 Leu tRNA}
939891	939965	+	75	91791369	Sden_R0028	-	^{05 Gln tRNA}
939996	940070	+	75	91791369	Sden_R0029	-	^{05 Gln tRNA}
940089	940165	+	77	91791369	Sden_R0030	-	^{16 Met tRNA}
940259	940343	+	85	91791369	Sden_R0031	-	^{15 Leu tRNA}
940458	940532	+	75	91791369	Sden_R0032	-	^{05 Gln tRNA}
1144177	1144263	+	87	91791369	Sden_R0033	-	^{15 Leu tRNA}
1144345	1144421	+	77	91791369	Sden_R0034	-	^{16 Met tRNA}
1150815	1150928	+	114	91791369	Sden_R0035	-
1415392	1415483	+	92	91791369	Sden_R0036	-	^{08 Ser tRNA}
1415506	1415582	+	77	91791369	Sden_R0037	-	^{11 Arg tRNA}
1415608	1415684	+	77	91791369	Sden_R0038	-	^{11 Arg tRNA}
1415750	1415826	+	77	91791369	Sden_R0039	-	^{11 Arg tRNA}
1415835	1415926	+	92	91791369	Sden_R0040	-	^{08 Ser tRNA}
1416008	1416084	+	77	91791369	Sden_R0041	-	^{11 Arg tRNA}
1447676	1448027	-	352	91791369	Sden_R0042	-	tmRNA
1516326	1516402	-	77	91791369	Sden_R0043	-	^{11 Arg tRNA}
1607157	1608689	+	1533	91791369	Sden_R0044	-	16S ribosomal RNA
1608907	1608983	+	77	91791369	Sden_R0045	-	^{14 Ile tRNA}
1609121	1609196	+	76	91791369	Sden_R0046	-	^{02 Ala tRNA}
1609695	1612599	+	2905	91791369	Sden_R0047	-	23S ribosomal RNA
1612853	1612968	+	116	91791369	Sden_R0048	-	5S ribosomal RNA
1627570	1627645	+	76	91791369	Sden_R0049	-	^{10 Lys tRNA}
1627811	1627886	+	76	91791369	Sden_R0050	-	^{10 Lys tRNA}
1628000	1628075	+	76	91791369	Sden_R0051	-	^{10 Lys tRNA}
1628397	1628472	+	76	91791369	Sden_R0052	-	^{10 Lys tRNA}
1628595	1628670	+	76	91791369	Sden_R0053	-	^{10 Lys tRNA}
1628839	1628914	+	76	91791369	Sden_R0054	-	^{10 Lys tRNA}
1677652	1677727	+	76	91791369	Sden_R0055	-	^{01 Gly tRNA}
1677746	1677819	+	74	91791369	Sden_R0056	-	^{19 Cys tRNA}
1677867	1677952	+	86	91791369	Sden_R0057	-	^{15 Leu tRNA}
1807834	1807983	+	150	91791369	Sden_R0058	-
1828239	1828329	+	91	91791369	Sden_R0059	-	^{08 Ser tRNA}
1920320	1920405	+	86	91791369	Sden_R0060	-	^{15 Leu tRNA}
2003405	2003481	-	77	91791369	Sden_R0061	-	^{13 Val tRNA}
2003853	2003929	-	77	91791369	Sden_R0062	-	^{13 Val tRNA}
2091848	2091948	+	101	91791369	Sden_R0063	-
2119907	2119982	+	76	91791369	Sden_R0064	-	^{01 Gly tRNA}
2120011	2120084	+	74	91791369	Sden_R0065	-	^{19 Cys tRNA}
2120132	2120217	+	86	91791369	Sden_R0066	-	^{15 Leu tRNA}
2136929	2137019	+	91	91791369	Sden_R0067	-	^{08 Ser tRNA}
2188666	2188741	+	76	91791369	Sden_R0068	-	^{07 Asn tRNA}
2188795	2188870	+	76	91791369	Sden_R0069	-	^{07 Asn tRNA}
2188927	2189002	+	76	91791369	Sden_R0070	-	^{07 Asn tRNA}
2189029	2189104	+	76	91791369	Sden_R0071	-	^{07 Asn tRNA}
2189160	2189235	+	76	91791369	Sden_R0072	-	^{07 Asn tRNA}
2243584	2243671	-	88	91791369	Sden_R0073	-	^{08 Ser tRNA}
2388865	2388949	+	85	91791369	Sden_R0074	-	^{18 Tyr tRNA}
2389041	2389125	+	85	91791369	Sden_R0075	-	^{18 Tyr tRNA}
2389202	2389286	+	85	91791369	Sden_R0076	-	^{18 Tyr tRNA}
2747485	2747594	-	110	91791369	Sden_R0077	-
2768128	2768204	+	77	91791369	Sden_R0078	-	^{03 Pro tRNA}
2821170	2821246	+	77	91791369	Sden_R0079	-	^{16 Met tRNA}
2821332	2821408	+	77	91791369	Sden_R0080	-	^{16 Met tRNA}
2821455	2821531	+	77	91791369	Sden_R0081	-	^{16 Met tRNA}
2821591	2821667	+	77	91791369	Sden_R0082	-	^{16 Met tRNA}
2898111	2898226	-	116	91791369	Sden_R0083	-	SRP RNA; RNA component of signal recognition particle
2938035	2938125	-	91	91791369	Sden_R0084	-	^{08 Ser tRNA}
2977435	2977510	-	76	91791369	Sden_R0085	-	^{09 His tRNA}
2977520	2977596	-	77	91791369	Sden_R0086	-	^{11 Arg tRNA}
2977725	2977801	-	77	91791369	Sden_R0087	-	^{03 Pro tRNA}
3026243	3026318	-	76	91791369	Sden_R0088	-	^{13 Val tRNA}
3026359	3026434	-	76	91791369	Sden_R0089	-	^{13 Val tRNA}
3026471	3026546	-	76	91791369	Sden_R0090	-	^{13 Val tRNA}
3026588	3026663	-	76	91791369	Sden_R0091	-	^{13 Val tRNA}
3026695	3026770	-	76	91791369	Sden_R0092	-	^{13 Val tRNA}
3026812	3026887	-	76	91791369	Sden_R0093	-	^{13 Val tRNA}
3028742	3028817	+	76	91791369	Sden_R0094	-	^{02 Ala tRNA}
3029286	3029361	+	76	91791369	Sden_R0095	-	^{04 Glu tRNA}
3029400	3029475	+	76	91791369	Sden_R0096	-	^{02 Ala tRNA}
3029754	3029829	+	76	91791369	Sden_R0097	-	^{04 Glu tRNA}
3030150	3030225	+	76	91791369	Sden_R0098	-	^{04 Glu tRNA}
3030551	3030626	+	76	91791369	Sden_R0099	-	^{04 Glu tRNA}
3030947	3031022	+	76	91791369	Sden_R0100	-	^{04 Glu tRNA}
3031156	3031231	+	76	91791369	Sden_R0101	-	^{04 Glu tRNA}
3232507	3232582	+	76	91791369	Sden_R0102	-	^{17 Phe tRNA}
3232590	3232665	+	76	91791369	Sden_R0103	-	^{12 Thr tRNA}
3384708	3384784	+	77	91791369	Sden_R0104	-	^{16 Met tRNA}
3408371	3408486	-	116	91791369	Sden_R0105	-	5S ribosomal RNA
3408740	3411644	-	2905	91791369	Sden_R0106	-	23S ribosomal RNA
3412182	3413716	-	1535	91791369	Sden_R0107	-	16S ribosomal RNA
3421796	3421871	+	76	91791369	Sden_R0108	-	^{17 Phe tRNA}
3421925	3422011	+	87	91791369	Sden_R0109	-	^{15 Leu tRNA}
3649114	3649190	-	77	91791369	Sden_R0110	-	^{20 Trp tRNA}
3846313	3846388	-	76	91791369	Sden_R0111	-	^{01 Gly tRNA}
3846639	3846714	-	76	91791369	Sden_R0112	-	^{01 Gly tRNA}
3846958	3847033	-	76	91791369	Sden_R0113	-	^{01 Gly tRNA}
4119466	4119542	-	77	91791369	Sden_R0114	-	^{06 Asp tRNA}
4119632	4119747	-	116	91791369	Sden_R0115	-	5S ribosomal RNA
4119931	4122835	-	2905	91791369	Sden_R0116	-	23S ribosomal RNA
4123334	4123409	-	76	91791369	Sden_R0117	-	^{02 Ala tRNA}
4123547	4123623	-	77	91791369	Sden_R0118	-	^{14 Ile tRNA}
4123841	4125373	-	1533	91791369	Sden_R0119	-	16S ribosomal RNA
4273827	4273942	-	116	91791369	Sden_R0120	-	5S ribosomal RNA
4274152	4277056	-	2905	91791369	Sden_R0121	-	23S ribosomal RNA
4277593	4279127	-	1535	91791369	Sden_R0122	-	16S ribosomal RNA
4439245	4439335	-	91	91791369	Sden_R0123	-	^{06 Asp tRNA}
4439396	4439472	-	77	91791369	Sden_R0124	-	^{06 Asp tRNA}
4439562	4439677	-	116	91791369	Sden_R0125	-	5S ribosomal RNA
4439861	4442765	-	2905	91791369	Sden_R0126	-	23S ribosomal RNA
4443302	4444836	-	1535	91791369	Sden_R0127	-	16S ribosomal RNA