Геном прокариот/Материалы:NC 007964

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   LOCUS       NC_007964            4406967 bp    DNA     circular BCT 17-APR-2006
   DEFINITION  Nitrobacter hamburgensis X14, complete genome.
   ACCESSION   NC_007964
   VERSION     NC_007964.1  GI:92115633
   KEYWORDS    .
   SOURCE      Nitrobacter hamburgensis X14
     ORGANISM  Nitrobacter hamburgensis X14
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Nitrobacter.
   REFERENCE   1  (bases 1 to 4406967)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D.,
               Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
               Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Nitrobacter hamburgensis X14
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4406967)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4406967)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M.,
               Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L.,
               Poret-Peterson,A.T., Gentry,M.E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000319.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634489
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Contacts: Dan Arp (arpd@bcc.orst.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
95235 95309 - 75 92115633 Nham_R0001 - 01 Gly tRNA
188039 188114 + 76 92115633 Nham_R0002 - 02 Ala tRNA
202647 202733 - 87 92115633 Nham_R0003 - 15 Leu tRNA
236858 236931 - 74 92115633 Nham_R0004 - 01 Gly tRNA
315665 315739 - 75 92115633 Nham_R0005 - 12 Thr tRNA
324825 324900 + 76 92115633 Nham_R0006 - 17 Phe tRNA
511488 511592 + 105 92115633 Nham_R0007 - SRP RNA; RNA component of signal recognition particle
566183 566259 + 77 92115633 Nham_R0008 - 11 Arg tRNA
567886 567975 - 90 92115633 Nham_R0009 - 08 Ser tRNA
627348 627423 + 76 92115633 Nham_R0010 - 12 Thr tRNA
660095 660171 - 77 92115633 Nham_R0011 - 03 Pro tRNA
668215 668290 - 76 92115633 Nham_R0012 - 02 Ala tRNA
723627 725115 + 1489 92115633 Nham_R0013 - 16S ribosomal RNA
725322 725398 + 77 92115633 Nham_R0014 - 14 Ile tRNA
725431 725506 + 76 92115633 Nham_R0015 - 02 Ala tRNA
725920 728782 + 2863 92115633 Nham_R0016 - 23S ribosomal RNA
728859 728973 + 115 92115633 Nham_R0017 - 5S ribosomal RNA
771213 771289 + 77 92115633 Nham_R0018 - 16 Met tRNA
865255 865329 + 75 92115633 Nham_R0019 - 05 Gln tRNA
1295042 1295116 + 75 92115633 Nham_R0020 - 13 Val tRNA
1412851 1412927 + 77 92115633 Nham_R0021 - 09 His tRNA
1713473 1713546 - 74 92115633 Nham_R0022 - 05 Gln tRNA
1731511 1731586 + 76 92115633 Nham_R0023 - 20 Trp tRNA
1792083 1792160 + 78 92115633 Nham_R0024 - 03 Pro tRNA
1796622 1796694 - 73 92115633 Nham_R0025 - Xaa tRNA
1820749 1820837 - 89 92115633 Nham_R0026 -
1820838 1820941 - 104 92115633 Nham_R0027 -
1978594 1978669 - 76 92115633 Nham_R0028 - 10 Lys tRNA
1988699 1988773 - 75 92115633 Nham_R0029 - 07 Asn tRNA
2240909 2240998 + 90 92115633 Nham_R0030 - 08 Ser tRNA
2285661 2285734 - 74 92115633 Nham_R0031 - 19 Cys tRNA
2317498 2317574 + 77 92115633 Nham_R0032 - 11 Arg tRNA
2382701 2382777 - 77 92115633 Nham_R0033 - 03 Pro tRNA
2386826 2386900 + 75 92115633 Nham_R0034 - 04 Glu tRNA
2402366 2402450 - 85 92115633 Nham_R0035 - 15 Leu tRNA
2414309 2414385 + 77 92115633 Nham_R0036 - 11 Arg tRNA
2471611 2471687 - 77 92115633 Nham_R0037 - 06 Asp tRNA
2475605 2475681 - 77 92115633 Nham_R0038 - 13 Val tRNA
2482828 2482912 - 85 92115633 Nham_R0039 - 15 Leu tRNA
2521326 2521419 + 94 92115633 Nham_R0040 - 08 Ser tRNA
2750455 2750528 - 74 92115633 Nham_R0041 - 01 Gly tRNA
2762140 2762225 - 86 92115633 Nham_R0042 - 18 Tyr tRNA
2765240 2765314 + 75 92115633 Nham_R0043 - 12 Thr tRNA
2845541 2845629 - 89 92115633 Nham_R0044 - 15 Leu tRNA
2878648 2878845 + 198 92115633 Nham_R0045 -
2989953 2990028 - 76 92115633 Nham_R0046 - 10 Lys tRNA
3009412 3009747 + 336 92115633 Nham_R0047 - tmRNA
3149021 3149095 - 75 92115633 Nham_R0048 - 04 Glu tRNA
3167952 3168026 + 75 92115633 Nham_R0049 - Xaa tRNA
3168336 3168408 - 73 92115633 Nham_R0050 - Xaa tRNA
3168513 3168587 + 75 92115633 Nham_R0051 - Xaa tRNA
3179513 3179867 + 355 92115633 Nham_R0052 - RNA component of RNaseP
3185661 3185796 + 136 92115633 Nham_R0053 -
3696554 3696631 + 78 92115633 Nham_R0054 - Xaa tRNA
3702623 3702698 - 76 92115633 Nham_R0055 - 16 Met tRNA
3722103 3722177 + 75 92115633 Nham_R0056 - 13 Val tRNA
3786754 3786830 - 77 92115633 Nham_R0057 - 16 Met tRNA
3844879 3844963 + 85 92115633 Nham_R0058 - 15 Leu tRNA
3982481 3982570 + 90 92115633 Nham_R0059 - 08 Ser tRNA
4032764 4032968 - 205 92115633 Nham_R0060 -
4033871 4034093 + 223 92115633 Nham_R0061 -
4078903 4078979 + 77 92115633 Nham_R0062 - 11 Arg tRNA
4110750 4110955 - 206 92115633 Nham_R0063 -
4137138 4137208 - 71 92115633 Nham_R0064 - 03 Pro tRNA
4373936 4374005 - 70 92115633 Nham_R0065 - 13 Val tRNA
4377528 4377604 - 77 92115633 Nham_R0066 - 03 Pro tRNA
4391773 4391849 + 77 92115633 Nham_R0067 - 03 Pro tRNA
4401397 4401473 - 77 92115633 Nham_R0068 - 11 Arg tRNA